Wall clock time and date at job start Tue Mar 31 2020 16:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48490 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46875 * 299.99978 * 3 2 1 6 6 H 1.48503 * 109.46954 * 59.99700 * 3 2 1 7 7 C 1.38803 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99453 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00031 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47019 * 180.02562 * 10 9 7 12 12 O 1.21272 * 120.00425 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00048 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47060 * 179.97438 * 14 13 11 16 16 H 1.08992 * 109.47056 * 294.99805 * 15 14 13 17 17 C 1.52997 * 109.46978 * 174.99741 * 15 14 13 18 18 O 1.42905 * 109.47347 * 305.00524 * 17 15 14 19 19 N 1.46906 * 109.47053 * 55.00135 * 15 14 13 20 20 C 1.46898 * 110.99715 * 204.99863 * 19 15 14 21 21 C 1.53003 * 109.46800 * 180.02562 * 20 19 15 22 22 C 1.53183 * 109.54094 * 294.55386 * 21 20 19 23 23 C 1.53096 * 109.16157 * 183.15314 * 22 21 20 24 24 O 1.42904 * 109.41526 * 57.61002 * 23 22 21 25 25 C 1.42908 * 114.09623 * 298.84185 * 24 23 22 26 26 C 1.53093 * 109.41688 * 61.15689 * 25 24 23 27 27 H 0.96998 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 59.99914 * 10 9 7 29 29 H 1.08998 * 109.47028 * 300.00133 * 10 9 7 30 30 H 0.96999 * 120.00240 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.47025 * 59.99517 * 14 13 11 32 32 H 1.08998 * 109.47007 * 299.99619 * 14 13 11 33 33 H 1.09001 * 109.47272 * 65.00206 * 17 15 14 34 34 H 1.08994 * 109.47445 * 185.00212 * 17 15 14 35 35 H 0.96704 * 114.00283 * 180.02562 * 18 17 15 36 36 H 1.00896 * 110.99538 * 328.95036 * 19 15 14 37 37 H 1.08994 * 109.47005 * 299.99284 * 20 19 15 38 38 H 1.09001 * 109.47253 * 60.00251 * 20 19 15 39 39 H 1.09004 * 109.54455 * 54.81805 * 21 20 19 40 40 H 1.08999 * 109.52038 * 303.05760 * 22 21 20 41 41 H 1.09000 * 109.51992 * 63.25315 * 22 21 20 42 42 H 1.09006 * 109.47791 * 297.62805 * 23 22 21 43 43 H 1.08997 * 109.48228 * 177.59480 * 23 22 21 44 44 H 1.09000 * 109.48219 * 301.17485 * 25 24 23 45 45 H 1.09003 * 109.47733 * 181.14188 * 25 24 23 46 46 H 1.08998 * 109.52467 * 182.48222 * 26 25 24 47 47 H 1.09002 * 109.52155 * 62.29619 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8439 -6.3432 0.0003 14 6 2.3301 -7.7151 -0.0009 15 6 3.5022 -8.6986 -0.0007 16 1 4.0602 -8.5989 -0.9317 17 6 2.9691 -10.1273 0.1238 18 8 2.1411 -10.2273 1.2842 19 7 4.3872 -8.4055 1.1346 20 6 5.7549 -8.8717 0.8699 21 6 6.6449 -8.5502 2.0722 22 6 6.7685 -7.0311 2.2264 23 6 7.7229 -6.7194 3.3822 24 8 8.9910 -7.3273 3.1281 25 6 8.9444 -8.7516 3.0214 26 6 8.0391 -9.1450 1.8513 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8894 30 1 3.8007 -6.1836 0.0006 31 1 1.7224 -7.8747 -0.8915 32 1 1.7206 -7.8756 0.8884 33 1 2.3845 -10.3755 -0.7621 34 1 3.8053 -10.8207 0.2133 35 1 1.7679 -11.1081 1.4265 36 1 4.3772 -7.4213 1.3561 37 1 5.7457 -9.9488 0.7030 38 1 6.1448 -8.3700 -0.0158 39 1 6.2059 -8.9752 2.9749 40 1 7.1606 -6.6021 1.3044 41 1 5.7877 -6.6057 2.4392 42 1 7.3102 -7.1138 4.3108 43 1 7.8480 -5.6402 3.4693 44 1 8.5478 -9.1726 3.9453 45 1 9.9496 -9.1362 2.8487 46 1 7.9670 -10.2312 1.7956 47 1 8.4568 -8.7586 0.9216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676504813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:19 Heat of formation + Delta-G solvation = -172.124531 kcal Electronic energy + Delta-G solvation = -26481.495262 eV Core-core repulsion = 22595.758989 eV Total energy + Delta-G solvation = -3885.736273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90488 -40.36756 -38.92265 -36.86465 -35.87836 -34.58909 -34.03660 -32.04294 -31.53272 -30.10335 -27.71046 -27.23454 -26.33332 -24.50755 -23.28224 -21.86612 -21.54939 -20.89394 -19.87294 -18.44504 -18.08536 -17.60012 -17.04154 -16.93447 -16.88459 -16.74965 -16.55455 -16.10684 -15.77813 -15.64874 -15.16081 -14.93462 -14.72437 -14.61668 -14.51783 -14.32038 -14.09132 -13.76208 -13.34936 -13.16434 -13.08785 -12.91414 -12.79814 -12.63791 -12.56050 -12.25696 -12.05454 -11.85324 -11.70687 -11.40193 -11.16449 -11.16148 -11.01671 -10.77631 -10.45307 -10.27886 -10.19126 -9.39231 -8.67389 -8.35095 -6.13183 1.25858 1.41406 1.46366 1.57212 1.57913 2.20136 2.27137 2.94298 2.99274 3.04243 3.30887 3.41815 3.74731 3.77173 3.83420 3.92597 3.94228 4.10080 4.15951 4.26130 4.29537 4.36304 4.45575 4.47988 4.50596 4.57577 4.60807 4.67195 4.70506 4.75060 4.81426 4.88004 4.92814 5.01267 5.02622 5.15831 5.17812 5.33367 5.41990 5.43192 6.03042 6.19828 6.28058 6.30586 6.37896 7.04718 7.06399 7.17649 8.74437 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002758 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.558686 B =10151.311961 C =12623.940996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.562 6.562 13 N -0.715 5.715 14 C 0.125 3.875 15 C 0.084 3.916 16 H 0.081 0.919 17 C 0.091 3.909 18 O -0.581 6.581 19 N -0.686 5.686 20 C 0.067 3.933 21 C -0.084 4.084 22 C -0.153 4.153 23 C 0.058 3.942 24 O -0.407 6.407 25 C 0.054 3.946 26 C -0.143 4.143 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.409 0.591 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.391 0.609 36 H 0.339 0.661 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.206 -24.629 1.999 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.440 6.440 13 N -0.370 5.370 14 C 0.001 3.999 15 C -0.026 4.026 16 H 0.099 0.901 17 C 0.012 3.988 18 O -0.389 6.389 19 N -0.321 5.321 20 C -0.061 4.061 21 C -0.103 4.103 22 C -0.191 4.191 23 C -0.019 4.019 24 O -0.326 6.326 25 C -0.022 4.022 26 C -0.182 4.182 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.246 0.754 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.239 0.761 36 H 0.160 0.840 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.219 -24.728 2.373 30.226 hybrid contribution 1.559 1.318 -0.619 2.134 sum 18.779 -23.410 1.754 30.062 Atomic orbital electron populations 1.70190 1.07991 1.28553 1.48081 1.26137 0.95969 1.03347 0.93761 0.84897 0.78628 0.76309 0.78059 1.17974 1.19944 1.19966 1.23229 0.95341 0.91919 1.58740 0.89866 1.85615 1.10471 0.99250 1.97042 1.23373 1.03644 0.94225 1.06843 1.20070 0.86193 0.86635 0.75000 1.90700 1.17427 1.86069 1.49825 1.45755 1.09858 1.05408 1.75973 1.21422 0.96921 0.79279 1.02280 1.21879 0.92528 0.94541 0.93643 0.90108 1.22139 0.93918 0.94670 0.88036 1.86567 1.68027 1.37500 1.46756 1.60474 1.08890 1.23635 1.39053 1.22087 0.86712 1.01161 0.96181 1.21159 0.95056 0.94994 0.99058 1.22260 1.00185 0.96812 0.99866 1.22627 0.83739 0.98700 0.96835 1.87912 1.30700 1.21158 1.92825 1.22742 1.01360 0.80523 0.97621 1.22160 0.94507 1.02069 0.99418 0.91995 0.87119 0.87145 0.75425 0.91584 0.92016 0.92115 0.91786 0.76068 0.83979 0.89955 0.94393 0.90853 0.91236 0.90791 0.92872 0.88709 0.92801 0.87793 0.89189 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.08 9.50 67.96 0.65 -30.44 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.54 19.94 7.85 87.66 0.69 20.63 16 12 O -0.56 -26.64 15.86 -3.00 -0.05 -26.69 16 13 N -0.71 -18.15 4.99 -463.07 -2.31 -20.46 16 14 C 0.12 2.95 5.20 86.38 0.45 3.40 16 15 C 0.08 1.30 2.60 44.91 0.12 1.42 16 16 H 0.08 0.97 7.80 -2.39 -0.02 0.95 16 17 C 0.09 1.18 6.80 71.98 0.49 1.67 16 18 O -0.58 -10.04 12.64 -148.98 -1.88 -11.93 16 19 N -0.69 -10.65 6.25 -491.57 -3.07 -13.72 16 20 C 0.07 0.77 4.95 86.30 0.43 1.19 16 21 C -0.08 -1.02 2.48 -10.67 -0.03 -1.04 16 22 C -0.15 -2.15 5.12 30.69 0.16 -2.00 16 23 C 0.06 0.90 6.84 72.01 0.49 1.39 16 24 O -0.41 -7.37 10.77 -148.98 -1.60 -8.97 16 25 C 0.05 0.66 6.84 72.01 0.49 1.15 16 26 C -0.14 -1.44 5.42 30.68 0.17 -1.27 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.41 7.60 7.37 -92.71 -0.68 6.92 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.84 7.39 -2.39 -0.02 1.83 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.62 7.35 -2.39 -0.02 0.60 16 35 H 0.39 3.33 9.12 -74.05 -0.68 2.65 16 36 H 0.34 5.75 5.07 -89.70 -0.45 5.30 16 37 H 0.08 0.81 7.36 -2.39 -0.02 0.79 16 38 H 0.04 0.40 8.06 -2.39 -0.02 0.38 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.08 6.85 -2.39 -0.02 1.07 16 42 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -80.35 390.62 -3.59 -83.93 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.83 Total: 25.06 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.00 Total: -7.40 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -5.10 Total: -90.13 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -3.53 Total: -47.58 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -80.35 -3.59 -83.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.190 kcal (2) G-P(sol) polarization free energy of solvation -80.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds