Wall clock time and date at job start Tue Mar 31 2020 16:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09002 * 109.47682 * 64.99618 * 15 14 13 17 17 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 18 18 O 1.42902 * 109.46730 * 54.99530 * 17 15 14 19 19 N 1.46906 * 109.47076 * 304.99500 * 15 14 13 20 20 C 1.46903 * 110.99854 * 154.99879 * 19 15 14 21 21 C 1.52997 * 109.46845 * 180.02562 * 20 19 15 22 22 C 1.53178 * 109.54680 * 294.55752 * 21 20 19 23 23 C 1.53091 * 109.16195 * 183.15352 * 22 21 20 24 24 O 1.42894 * 109.41829 * 57.61065 * 23 22 21 25 25 C 1.42904 * 114.09709 * 298.83939 * 24 23 22 26 26 C 1.53093 * 109.41247 * 61.15762 * 25 24 23 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.08992 * 109.47566 * 174.99860 * 17 15 14 34 34 H 1.08998 * 109.46886 * 295.00118 * 17 15 14 35 35 H 0.96705 * 113.99732 * 180.02562 * 18 17 15 36 36 H 1.00901 * 110.99482 * 31.04865 * 19 15 14 37 37 H 1.09001 * 109.47321 * 299.99877 * 20 19 15 38 38 H 1.08999 * 109.46905 * 60.00434 * 20 19 15 39 39 H 1.09006 * 109.54482 * 54.82570 * 21 20 19 40 40 H 1.08994 * 109.51972 * 303.05851 * 22 21 20 41 41 H 1.09000 * 109.51901 * 63.24921 * 22 21 20 42 42 H 1.08998 * 109.48424 * 297.62129 * 23 22 21 43 43 H 1.09003 * 109.47860 * 177.59098 * 23 22 21 44 44 H 1.08997 * 109.48192 * 301.17330 * 25 24 23 45 45 H 1.09001 * 109.49239 * 181.14812 * 25 24 23 46 46 H 1.09002 * 109.51831 * 182.48479 * 26 25 24 47 47 H 1.08999 * 109.52445 * 62.30525 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 1 4.0609 -8.6033 0.9227 17 6 2.9697 -10.1266 -0.1401 18 8 2.1417 -10.2210 -1.3010 19 7 4.3876 -8.3999 -1.1426 20 6 5.7554 -8.8672 -0.8803 21 6 6.6455 -8.5387 -2.0805 22 6 6.1805 -9.3424 -3.2987 23 6 7.1242 -9.0673 -4.4723 24 8 8.4605 -9.4068 -4.0971 25 6 8.9659 -8.6533 -2.9930 26 6 8.0962 -8.9118 -1.7599 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 3.8059 -10.8194 -0.2330 34 1 2.3851 -10.3791 0.7445 35 1 1.7680 -11.1009 -1.4471 36 1 4.3775 -7.4145 -1.3594 37 1 6.1453 -8.3698 0.0078 38 1 5.7462 -9.9451 -0.7185 39 1 6.5832 -7.4728 -2.2998 40 1 6.1957 -10.4060 -3.0607 41 1 5.1676 -9.0428 -3.5677 42 1 7.0780 -8.0107 -4.7360 43 1 6.8233 -9.6695 -5.3296 44 1 8.9438 -7.5912 -3.2372 45 1 9.9917 -8.9570 -2.7845 46 1 8.4534 -8.3042 -0.9284 47 1 8.1501 -9.9667 -1.4908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:23 Heat of formation + Delta-G solvation = -142.370737 kcal Electronic energy + Delta-G solvation = -26315.084615 eV Core-core repulsion = 22430.638563 eV Total energy + Delta-G solvation = -3884.446052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92880 -39.36713 -38.03038 -36.18199 -34.88688 -33.10183 -32.43533 -31.41112 -30.42878 -28.97091 -26.56193 -25.68367 -25.20979 -23.85771 -22.64776 -20.87907 -20.47638 -20.29015 -17.95677 -17.75413 -16.91949 -16.38095 -16.29216 -16.16386 -15.72388 -15.39440 -15.08218 -14.97387 -14.84043 -14.80242 -14.16677 -14.06574 -13.78250 -13.70157 -13.18275 -13.00205 -12.81870 -12.70129 -12.57087 -12.35009 -11.84891 -11.70150 -11.64379 -11.34296 -11.19774 -11.07006 -11.03358 -10.88375 -10.76781 -10.57865 -10.18868 -9.82701 -9.80982 -9.42270 -9.07870 -8.91237 -8.74110 -8.24402 -6.50756 -6.22368 -3.93005 2.99758 3.08689 3.21625 3.26885 3.30591 3.55038 3.61793 3.73692 4.02221 4.19538 4.30063 4.44219 4.47747 4.57561 4.69585 4.80696 4.90941 5.00976 5.01574 5.10224 5.12717 5.13113 5.17153 5.20363 5.25416 5.30718 5.37088 5.42118 5.51044 5.56392 5.57375 5.66312 5.74168 5.86417 5.93069 6.02829 6.03776 6.10933 6.53017 6.66706 6.88370 7.00994 7.46909 7.58397 7.62616 8.34253 8.58901 9.22828 10.85067 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.002449 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.030031 B =11429.078587 C =13324.517587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.743 5.743 14 C 0.122 3.878 15 C 0.079 3.921 16 H 0.061 0.939 17 C 0.093 3.907 18 O -0.554 6.554 19 N -0.674 5.674 20 C 0.063 3.937 21 C -0.088 4.088 22 C -0.139 4.139 23 C 0.056 3.944 24 O -0.387 6.387 25 C 0.061 3.939 26 C -0.151 4.151 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.374 0.626 36 H 0.345 0.655 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.436 -23.312 -2.323 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.399 5.399 14 C -0.002 4.002 15 C -0.031 4.031 16 H 0.079 0.921 17 C 0.014 3.986 18 O -0.358 6.358 19 N -0.308 5.308 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.177 4.177 23 C -0.020 4.020 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.189 4.189 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.329 -23.600 -2.803 27.751 hybrid contribution 2.495 1.597 0.990 3.123 sum 16.824 -22.003 -1.813 27.757 Atomic orbital electron populations 1.70017 1.05950 1.27471 1.46813 1.24997 0.95032 0.99035 0.94540 0.86165 0.79382 0.81566 0.78360 1.20249 1.20745 1.19726 1.22862 0.94881 0.91675 1.58994 0.90968 1.85423 1.04817 0.96260 1.96702 1.23535 1.06632 0.95453 1.04816 1.20278 0.86517 0.86162 0.75148 1.90714 1.15292 1.85535 1.47095 1.46051 1.09511 1.05903 1.78398 1.21381 0.95467 0.79618 1.03720 1.21848 0.93769 0.94886 0.92641 0.92122 1.22038 0.93255 0.95381 0.87966 1.86612 1.67478 1.35703 1.45976 1.60390 1.07840 1.23538 1.39054 1.22087 0.87849 1.00776 0.95900 1.21196 0.93718 1.00357 0.95429 1.22112 1.00387 1.00593 0.94578 1.22666 0.81942 1.00194 0.97209 1.87921 1.29681 1.62909 1.50026 1.22542 0.97481 0.95604 0.85934 1.22217 0.95294 1.02665 0.98709 0.92165 0.89357 0.89244 0.77530 0.91222 0.89397 0.93596 0.93441 0.78023 0.83470 0.95120 0.90943 0.90985 0.91474 0.89391 0.93224 0.88958 0.93181 0.89016 0.90936 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.97 7.85 -10.98 -0.09 9.88 16 12 O -0.51 -11.82 15.86 5.55 0.09 -11.73 16 13 N -0.74 -9.80 4.99 -60.30 -0.30 -10.10 16 14 C 0.12 1.48 5.20 -4.04 -0.02 1.46 16 15 C 0.08 0.68 2.60 -67.71 -0.18 0.50 16 16 H 0.06 0.46 7.80 -51.93 -0.40 0.05 16 17 C 0.09 0.71 6.80 37.16 0.25 0.96 16 18 O -0.55 -5.07 12.64 -35.23 -0.45 -5.52 16 19 N -0.67 -5.72 5.79 -106.72 -0.62 -6.33 16 20 C 0.06 0.44 4.88 -3.82 -0.02 0.42 16 21 C -0.09 -0.62 2.42 -90.44 -0.22 -0.83 16 22 C -0.14 -1.07 5.27 -26.59 -0.14 -1.22 16 23 C 0.06 0.45 6.84 37.20 0.25 0.70 16 24 O -0.39 -3.62 10.77 -35.23 -0.38 -4.00 16 25 C 0.06 0.43 6.84 37.21 0.25 0.69 16 26 C -0.15 -0.94 5.42 -26.59 -0.14 -1.09 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.39 4.00 7.37 -40.82 -0.30 3.70 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.29 7.39 -51.93 -0.38 0.91 16 33 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.37 1.83 9.12 45.56 0.42 2.25 16 36 H 0.34 3.13 6.71 -39.29 -0.26 2.87 16 37 H 0.03 0.20 8.06 -51.93 -0.42 -0.22 16 38 H 0.07 0.50 7.36 -51.93 -0.38 0.12 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.77 7.87 -51.93 -0.41 0.37 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -35.80 392.84 -9.01 -44.81 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.15 Total: 4.23 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.38 Total: -4.35 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -0.19 Total: -41.90 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.74 Total: -21.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.80 -9.01 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.561 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds