Wall clock time and date at job start Tue Mar 31 2020 16:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09002 * 109.47682 * 64.99618 * 15 14 13 17 17 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 18 18 O 1.42902 * 109.46730 * 54.99530 * 17 15 14 19 19 N 1.46906 * 109.47076 * 304.99500 * 15 14 13 20 20 C 1.46903 * 110.99854 * 154.99879 * 19 15 14 21 21 C 1.52997 * 109.46845 * 180.02562 * 20 19 15 22 22 C 1.53178 * 109.54680 * 294.55752 * 21 20 19 23 23 C 1.53091 * 109.16195 * 183.15352 * 22 21 20 24 24 O 1.42894 * 109.41829 * 57.61065 * 23 22 21 25 25 C 1.42904 * 114.09709 * 298.83939 * 24 23 22 26 26 C 1.53093 * 109.41247 * 61.15762 * 25 24 23 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.08992 * 109.47566 * 174.99860 * 17 15 14 34 34 H 1.08998 * 109.46886 * 295.00118 * 17 15 14 35 35 H 0.96705 * 113.99732 * 180.02562 * 18 17 15 36 36 H 1.00901 * 110.99482 * 31.04865 * 19 15 14 37 37 H 1.09001 * 109.47321 * 299.99877 * 20 19 15 38 38 H 1.08999 * 109.46905 * 60.00434 * 20 19 15 39 39 H 1.09006 * 109.54482 * 54.82570 * 21 20 19 40 40 H 1.08994 * 109.51972 * 303.05851 * 22 21 20 41 41 H 1.09000 * 109.51901 * 63.24921 * 22 21 20 42 42 H 1.08998 * 109.48424 * 297.62129 * 23 22 21 43 43 H 1.09003 * 109.47860 * 177.59098 * 23 22 21 44 44 H 1.08997 * 109.48192 * 301.17330 * 25 24 23 45 45 H 1.09001 * 109.49239 * 181.14812 * 25 24 23 46 46 H 1.09002 * 109.51831 * 182.48479 * 26 25 24 47 47 H 1.08999 * 109.52445 * 62.30525 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 1 4.0609 -8.6033 0.9227 17 6 2.9697 -10.1266 -0.1401 18 8 2.1417 -10.2210 -1.3010 19 7 4.3876 -8.3999 -1.1426 20 6 5.7554 -8.8672 -0.8803 21 6 6.6455 -8.5387 -2.0805 22 6 6.1805 -9.3424 -3.2987 23 6 7.1242 -9.0673 -4.4723 24 8 8.4605 -9.4068 -4.0971 25 6 8.9659 -8.6533 -2.9930 26 6 8.0962 -8.9118 -1.7599 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 3.8059 -10.8194 -0.2330 34 1 2.3851 -10.3791 0.7445 35 1 1.7680 -11.1009 -1.4471 36 1 4.3775 -7.4145 -1.3594 37 1 6.1453 -8.3698 0.0078 38 1 5.7462 -9.9451 -0.7185 39 1 6.5832 -7.4728 -2.2998 40 1 6.1957 -10.4060 -3.0607 41 1 5.1676 -9.0428 -3.5677 42 1 7.0780 -8.0107 -4.7360 43 1 6.8233 -9.6695 -5.3296 44 1 8.9438 -7.5912 -3.2372 45 1 9.9917 -8.9570 -2.7845 46 1 8.4534 -8.3042 -0.9284 47 1 8.1501 -9.9667 -1.4908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676504814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:22 Heat of formation + Delta-G solvation = -172.155927 kcal Electronic energy + Delta-G solvation = -26316.376198 eV Core-core repulsion = 22430.638563 eV Total energy + Delta-G solvation = -3885.737634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87235 -40.33411 -38.91311 -36.82852 -35.86915 -34.58786 -34.03518 -31.98077 -31.54901 -30.11962 -27.70908 -27.15633 -26.32888 -24.42946 -23.24888 -21.85976 -21.57636 -20.93830 -19.85691 -18.44211 -18.03613 -17.58354 -16.99479 -16.92552 -16.88019 -16.75484 -16.30061 -15.97134 -15.92791 -15.62178 -15.49289 -14.87739 -14.70617 -14.64246 -14.43439 -14.32261 -13.80451 -13.67981 -13.35636 -13.18678 -13.16890 -12.90614 -12.85485 -12.62189 -12.49325 -12.20872 -12.06528 -11.79679 -11.71922 -11.43951 -11.15313 -11.14526 -11.00664 -10.77289 -10.41594 -10.28053 -10.17707 -9.35216 -8.67401 -8.34861 -6.13168 1.25967 1.42538 1.46563 1.56840 1.58482 2.21179 2.27547 2.96457 2.99345 3.04515 3.31208 3.42821 3.73888 3.81353 3.88921 3.93638 3.96820 4.13988 4.16848 4.26932 4.33970 4.36947 4.48397 4.48669 4.50983 4.59161 4.62735 4.69522 4.71173 4.78299 4.84023 4.88962 4.96625 5.00335 5.04191 5.20550 5.32013 5.34737 5.41545 5.45634 6.03835 6.19548 6.29762 6.32920 6.40180 7.04371 7.06365 7.19238 8.74408 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.002449 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.030031 B =11429.078587 C =13324.517587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.714 5.714 14 C 0.126 3.874 15 C 0.086 3.914 16 H 0.082 0.918 17 C 0.091 3.909 18 O -0.580 6.580 19 N -0.683 5.683 20 C 0.068 3.932 21 C -0.086 4.086 22 C -0.132 4.132 23 C 0.054 3.946 24 O -0.407 6.407 25 C 0.054 3.946 26 C -0.144 4.144 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.390 0.610 36 H 0.340 0.660 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.357 -23.714 -1.643 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.441 6.441 13 N -0.369 5.369 14 C 0.002 3.998 15 C -0.024 4.024 16 H 0.099 0.901 17 C 0.012 3.988 18 O -0.387 6.387 19 N -0.317 5.317 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.169 4.169 23 C -0.022 4.022 24 O -0.326 6.326 25 C -0.022 4.022 26 C -0.182 4.182 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.247 0.753 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.239 0.761 36 H 0.160 0.840 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.105 0.895 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.308 -24.056 -2.122 29.712 hybrid contribution 1.636 1.571 0.748 2.389 sum 18.945 -22.485 -1.374 29.434 Atomic orbital electron populations 1.70186 1.08008 1.28619 1.48013 1.26147 0.95970 1.03375 0.93751 0.84941 0.78206 0.75961 0.78786 1.19335 1.20360 1.18092 1.23199 0.95347 0.91926 1.58847 0.89834 1.85627 1.10546 0.99279 1.97050 1.23368 1.03594 0.94214 1.06843 1.20074 0.86197 0.86657 0.75008 1.90704 1.17480 1.86087 1.49876 1.45737 1.09905 1.05337 1.75905 1.21397 0.96891 0.79292 1.02185 1.21852 0.92514 0.94351 0.93657 0.90081 1.22131 0.93821 0.94803 0.88006 1.86566 1.67974 1.37444 1.46731 1.60407 1.08823 1.23223 1.39237 1.22076 0.86814 1.01021 0.96162 1.21181 0.94322 0.99927 0.95104 1.22008 0.99577 1.00379 0.94984 1.22711 0.81705 1.00274 0.97525 1.87893 1.30150 1.63600 1.50993 1.22719 0.98257 0.95558 0.85687 1.22167 0.94467 1.02898 0.98708 0.91999 0.87106 0.87129 0.75283 0.91722 0.92073 0.92063 0.92231 0.76143 0.84005 0.93856 0.90608 0.91342 0.91927 0.90640 0.93234 0.88610 0.93014 0.87848 0.89490 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.40 29.55 68.60 2.03 45.42 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -31.01 9.50 67.96 0.65 -30.36 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.73 7.85 87.66 0.69 20.42 16 12 O -0.56 -26.59 15.86 -3.04 -0.05 -26.64 16 13 N -0.71 -17.67 4.99 -463.07 -2.31 -19.98 16 14 C 0.13 2.92 5.20 86.38 0.45 3.37 16 15 C 0.09 1.29 2.60 44.91 0.12 1.41 16 16 H 0.08 0.92 7.80 -2.39 -0.02 0.90 16 17 C 0.09 1.19 6.80 71.98 0.49 1.68 16 18 O -0.58 -10.00 12.64 -148.98 -1.88 -11.88 16 19 N -0.68 -10.09 5.79 -491.55 -2.85 -12.94 16 20 C 0.07 0.75 4.88 86.30 0.42 1.17 16 21 C -0.09 -1.03 2.42 -10.68 -0.03 -1.06 16 22 C -0.13 -1.89 5.27 30.68 0.16 -1.73 16 23 C 0.05 0.82 6.84 72.01 0.49 1.32 16 24 O -0.41 -7.21 10.77 -148.98 -1.60 -8.81 16 25 C 0.05 0.67 6.84 72.01 0.49 1.16 16 26 C -0.14 -1.46 5.42 30.68 0.17 -1.30 16 27 H 0.27 15.48 8.31 -92.72 -0.77 14.71 16 28 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.41 7.21 7.37 -92.71 -0.68 6.53 16 31 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.80 7.39 -2.39 -0.02 1.79 16 33 H 0.06 0.63 7.35 -2.39 -0.02 0.61 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.39 3.42 9.12 -74.05 -0.68 2.75 16 36 H 0.34 5.44 6.71 -89.69 -0.60 4.84 16 37 H 0.04 0.39 8.06 -2.39 -0.02 0.37 16 38 H 0.08 0.82 7.36 -2.39 -0.02 0.80 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -79.92 392.84 -3.51 -83.43 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.98 Total: 24.24 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.00 Total: -7.37 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -4.87 Total: -88.77 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -3.53 Total: -47.33 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -79.92 -3.51 -83.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.726 kcal (2) G-P(sol) polarization free energy of solvation -79.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds