Wall clock time and date at job start Tue Mar 31 2020 16:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.50140 * 110.27590 * 174.31282 * 14 13 12 16 16 C 1.29823 * 123.28749 * 342.93553 * 15 14 13 17 17 C 1.50703 * 118.55903 * 180.39016 * 16 15 14 18 18 N 1.46505 * 109.46784 * 94.99514 * 17 16 15 19 19 C 1.34777 * 119.99305 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00664 * 0.02562 * 19 18 17 21 21 C 1.47266 * 119.99621 * 180.02562 * 19 18 17 22 22 C 1.46682 * 126.94229 * 179.97438 * 21 19 18 23 23 C 1.34489 * 106.33263 * 180.02562 * 22 21 19 24 24 N 1.36443 * 108.85731 * 0.02562 * 23 22 21 25 25 H 0.97003 * 124.85429 * 180.02562 * 24 23 22 26 26 C 1.34662 * 110.29857 * 359.72721 * 24 23 22 27 27 C 1.50311 * 122.89158 * 0.36273 * 16 15 14 28 28 C 1.47239 * 111.00267 * 188.97579 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.08998 * 109.33533 * 294.56443 * 14 13 12 34 34 H 1.09003 * 109.33216 * 54.07246 * 14 13 12 35 35 H 1.08001 * 118.36083 * 162.94635 * 15 14 13 36 36 H 1.08995 * 109.47496 * 214.99571 * 17 16 15 37 37 H 1.09003 * 109.46520 * 335.00060 * 17 16 15 38 38 H 0.96995 * 120.00196 * 0.02562 * 18 17 16 39 39 H 1.08000 * 126.83888 * 359.97370 * 22 21 19 40 40 H 1.08000 * 125.57328 * 180.02562 * 23 22 21 41 41 H 1.07995 * 125.80134 * 180.29818 * 26 24 23 42 42 H 1.09006 * 109.42858 * 103.60407 * 27 16 15 43 43 H 1.08998 * 109.43146 * 223.44940 * 27 16 15 44 44 H 1.08999 * 109.63934 * 287.50027 * 28 13 12 45 45 H 1.08999 * 109.63492 * 48.10736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 3.8326 -7.2350 1.3188 16 6 3.6550 -8.2656 0.5495 17 6 4.5866 -9.4414 0.6938 18 7 3.9860 -10.4333 1.5892 19 6 4.6445 -11.5758 1.8677 20 8 5.7374 -11.7831 1.3762 21 6 4.0405 -12.5731 2.7672 22 6 4.6177 -13.8596 3.1716 23 6 3.7221 -14.4340 3.9943 24 7 2.6468 -13.6042 4.1240 25 1 1.8642 -13.7915 4.6657 26 6 2.8300 -12.4850 3.3979 27 6 2.5607 -8.3380 -0.4783 28 6 1.5091 -7.2639 -0.1900 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.5891 -5.1215 1.3351 34 1 2.2735 -6.0263 2.1151 35 1 4.6463 -7.2589 2.0285 36 1 4.7581 -9.8912 -0.2841 37 1 5.5358 -9.1038 1.1100 38 1 3.1145 -10.2678 1.9815 39 1 5.5716 -14.2652 2.8685 40 1 3.8355 -15.3950 4.4738 41 1 2.1379 -11.6593 3.3243 42 1 2.9831 -8.1746 -1.4698 43 1 2.0935 -9.3222 -0.4419 44 1 0.9512 -7.5301 0.7078 45 1 0.8281 -7.1810 -1.0369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677567439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:13 Heat of formation + Delta-G solvation = -0.537842 kcal Electronic energy + Delta-G solvation = -26999.413074 eV Core-core repulsion = 23017.966158 eV Total energy + Delta-G solvation = -3981.446916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45102 -39.62323 -38.94597 -37.69523 -35.37273 -33.92379 -33.00426 -31.35372 -31.20458 -30.74545 -29.76895 -28.20576 -25.96701 -24.29900 -23.59910 -22.90192 -21.79421 -20.95884 -19.90189 -19.23147 -19.16473 -17.88945 -17.51737 -16.58490 -16.13475 -16.00245 -15.47514 -15.28982 -14.85109 -14.61554 -14.39864 -14.31779 -14.09647 -13.86385 -13.81671 -13.67133 -13.37736 -13.14337 -12.87123 -12.60906 -12.46103 -12.24203 -12.13612 -11.85020 -11.49653 -11.33840 -11.07324 -10.85201 -10.45836 -10.42519 -10.21166 -10.12164 -9.48327 -9.28943 -9.08210 -8.85988 -8.75590 -8.47189 -7.98331 -7.84043 -6.41902 -3.82638 1.44254 2.04379 2.10798 2.80790 3.20133 3.25883 3.30345 3.36659 3.41545 3.89465 3.98470 4.24518 4.49383 4.59327 4.68622 4.75672 4.80174 5.03274 5.12624 5.22582 5.27450 5.33124 5.43628 5.54604 5.55338 5.57544 5.66860 5.69324 5.75881 5.79403 5.92851 5.95453 6.12750 6.24392 6.28039 6.34488 6.37624 6.47803 6.51159 6.94629 6.99619 7.31732 7.34866 7.46322 7.55027 8.06181 8.21437 8.61726 9.18046 9.54212 10.06161 10.75731 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029147 B = 0.001780 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.407070 B =15728.053450 C =15942.426369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.045 3.955 13 N -0.509 5.509 14 C 0.073 3.927 15 C -0.108 4.108 16 C -0.155 4.155 17 C 0.160 3.840 18 N -0.724 5.724 19 C 0.586 3.414 20 O -0.547 6.547 21 C -0.228 4.228 22 C -0.142 4.142 23 C -0.023 4.023 24 N -0.551 5.551 25 H 0.417 0.583 26 C 0.045 3.955 27 C -0.071 4.071 28 C 0.050 3.950 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.039 0.961 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -26.338 8.131 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.086 4.086 13 N -0.233 5.233 14 C -0.054 4.054 15 C -0.128 4.128 16 C -0.156 4.156 17 C 0.037 3.963 18 N -0.376 5.376 19 C 0.375 3.625 20 O -0.425 6.425 21 C -0.238 4.238 22 C -0.166 4.166 23 C -0.151 4.151 24 N -0.146 5.146 25 H 0.254 0.746 26 C -0.091 4.091 27 C -0.108 4.108 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.166 0.834 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.088 -26.287 7.437 27.319 hybrid contribution -1.630 0.807 1.101 2.126 sum -1.717 -25.480 8.538 26.927 Atomic orbital electron populations 1.69604 1.05926 1.28236 1.50611 1.25255 0.95631 0.99706 0.97332 0.85919 0.78756 0.80471 0.79081 1.19884 1.21008 1.19939 1.19654 0.93345 0.82216 1.47640 0.87947 1.41861 1.09167 1.04581 1.64455 1.19741 0.88418 0.84535 0.84475 1.90484 1.13682 1.86848 1.55104 1.21905 0.93899 0.91269 1.01569 1.62030 1.24683 1.01292 1.35307 1.21249 0.96334 0.98425 0.89367 1.22344 0.98770 0.93839 0.97823 1.20858 0.99393 0.95513 0.99786 1.20301 0.95014 0.86739 0.94198 1.45946 1.22658 1.19131 1.49845 1.17443 0.84476 0.80573 0.80055 1.90772 1.20662 1.77925 1.53111 1.20520 0.97266 0.98633 1.07426 1.21988 1.00267 0.94016 1.00359 1.21832 0.89049 0.98276 1.05941 1.41612 1.18293 1.15820 1.38869 0.74622 1.21958 0.98552 0.91644 0.96963 1.20398 0.94226 0.97741 0.98467 1.22216 0.95428 0.89843 1.00307 0.91850 0.77511 0.93486 0.89210 0.86488 0.94281 0.87133 0.90961 0.91069 0.76951 0.83440 0.81261 0.81135 0.90041 0.91202 0.94974 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.25 7.54 -10.99 -0.08 10.17 16 11 O -0.58 -15.29 13.88 5.55 0.08 -15.21 16 12 C 0.04 0.78 5.44 -4.98 -0.03 0.75 16 13 N -0.51 -8.25 4.46 -237.58 -1.06 -9.31 16 14 C 0.07 1.15 5.22 -5.28 -0.03 1.12 16 15 C -0.11 -1.41 9.50 -35.97 -0.34 -1.75 16 16 C -0.15 -1.80 5.26 -100.92 -0.53 -2.33 16 17 C 0.16 1.81 5.72 -5.19 -0.03 1.78 16 18 N -0.72 -7.20 5.54 -62.61 -0.35 -7.54 16 19 C 0.59 7.22 7.81 -12.59 -0.10 7.12 16 20 O -0.55 -8.98 16.97 5.26 0.09 -8.89 16 21 C -0.23 -2.24 6.29 -103.35 -0.65 -2.89 16 22 C -0.14 -1.29 10.97 -37.50 -0.41 -1.70 16 23 C -0.02 -0.14 11.89 -16.83 -0.20 -0.34 16 24 N -0.55 -2.47 5.90 -12.85 -0.08 -2.55 16 25 H 0.42 0.45 8.96 -40.82 -0.37 0.08 16 26 C 0.05 0.28 11.40 -16.84 -0.19 0.09 16 27 C -0.07 -0.78 6.04 -28.04 -0.17 -0.95 16 28 C 0.05 0.61 5.59 -3.61 -0.02 0.59 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 31 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 33 H 0.12 2.27 5.98 -51.93 -0.31 1.96 16 34 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.11 1.33 7.81 -52.49 -0.41 0.92 16 36 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 37 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 38 H 0.40 2.93 7.41 -40.82 -0.30 2.62 16 39 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.17 0.54 7.45 -52.49 -0.39 0.15 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 45 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -35.55 379.20 -9.19 -44.74 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.21 Total: 11.07 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.02 Total: 3.76 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.82 Total: -57.12 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.55 -9.19 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677567439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.201 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds