Wall clock time and date at job start Tue Mar 31 2020 16:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.50140 * 110.27590 * 174.31282 * 14 13 12 16 16 C 1.29823 * 123.28749 * 342.93553 * 15 14 13 17 17 C 1.50703 * 118.55903 * 180.39016 * 16 15 14 18 18 N 1.46505 * 109.46784 * 94.99514 * 17 16 15 19 19 C 1.34777 * 119.99305 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00664 * 0.02562 * 19 18 17 21 21 C 1.47266 * 119.99621 * 180.02562 * 19 18 17 22 22 C 1.46682 * 126.94229 * 179.97438 * 21 19 18 23 23 C 1.34489 * 106.33263 * 180.02562 * 22 21 19 24 24 N 1.36443 * 108.85731 * 0.02562 * 23 22 21 25 25 H 0.97003 * 124.85429 * 180.02562 * 24 23 22 26 26 C 1.34662 * 110.29857 * 359.72721 * 24 23 22 27 27 C 1.50311 * 122.89158 * 0.36273 * 16 15 14 28 28 C 1.47239 * 111.00267 * 188.97579 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.08998 * 109.33533 * 294.56443 * 14 13 12 34 34 H 1.09003 * 109.33216 * 54.07246 * 14 13 12 35 35 H 1.08001 * 118.36083 * 162.94635 * 15 14 13 36 36 H 1.08995 * 109.47496 * 214.99571 * 17 16 15 37 37 H 1.09003 * 109.46520 * 335.00060 * 17 16 15 38 38 H 0.96995 * 120.00196 * 0.02562 * 18 17 16 39 39 H 1.08000 * 126.83888 * 359.97370 * 22 21 19 40 40 H 1.08000 * 125.57328 * 180.02562 * 23 22 21 41 41 H 1.07995 * 125.80134 * 180.29818 * 26 24 23 42 42 H 1.09006 * 109.42858 * 103.60407 * 27 16 15 43 43 H 1.08998 * 109.43146 * 223.44940 * 27 16 15 44 44 H 1.08999 * 109.63934 * 287.50027 * 28 13 12 45 45 H 1.08999 * 109.63492 * 48.10736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 3.8326 -7.2350 1.3188 16 6 3.6550 -8.2656 0.5495 17 6 4.5866 -9.4414 0.6938 18 7 3.9860 -10.4333 1.5892 19 6 4.6445 -11.5758 1.8677 20 8 5.7374 -11.7831 1.3762 21 6 4.0405 -12.5731 2.7672 22 6 4.6177 -13.8596 3.1716 23 6 3.7221 -14.4340 3.9943 24 7 2.6468 -13.6042 4.1240 25 1 1.8642 -13.7915 4.6657 26 6 2.8300 -12.4850 3.3979 27 6 2.5607 -8.3380 -0.4783 28 6 1.5091 -7.2639 -0.1900 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.5891 -5.1215 1.3351 34 1 2.2735 -6.0263 2.1151 35 1 4.6463 -7.2589 2.0285 36 1 4.7581 -9.8912 -0.2841 37 1 5.5358 -9.1038 1.1100 38 1 3.1145 -10.2678 1.9815 39 1 5.5716 -14.2652 2.8685 40 1 3.8355 -15.3950 4.4738 41 1 2.1379 -11.6593 3.3243 42 1 2.9831 -8.1746 -1.4698 43 1 2.0935 -9.3222 -0.4419 44 1 0.9512 -7.5301 0.7078 45 1 0.8281 -7.1810 -1.0369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677567439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:12 Heat of formation + Delta-G solvation = -28.383293 kcal Electronic energy + Delta-G solvation = -27000.620543 eV Core-core repulsion = 23017.966158 eV Total energy + Delta-G solvation = -3982.654385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98608 -40.78428 -40.12795 -39.19730 -36.53231 -35.83016 -34.11050 -33.22814 -31.92266 -31.75873 -30.44968 -29.36483 -27.38406 -25.85056 -24.68893 -23.76635 -22.82856 -21.48580 -21.02976 -20.69954 -19.86628 -19.65105 -18.51667 -17.76822 -17.40112 -17.00053 -16.63421 -16.58537 -16.23770 -15.94789 -15.58928 -15.38803 -15.31345 -14.98177 -14.85195 -14.51071 -14.46477 -14.10930 -13.82599 -13.69750 -13.68229 -13.48850 -13.25847 -13.01184 -12.94044 -12.88423 -12.46672 -12.41875 -12.11980 -12.05723 -11.45331 -11.43306 -11.11690 -10.25525 -10.17020 -9.98905 -9.86397 -9.70889 -9.27779 -9.14860 -8.44676 -5.92836 0.79990 1.05025 1.40386 1.42330 1.52824 1.56284 2.08568 2.29769 2.37250 2.58867 2.60549 2.80605 3.22304 3.41625 3.60289 3.83753 4.07703 4.12409 4.20231 4.30617 4.39341 4.41453 4.43900 4.46302 4.54198 4.57037 4.61960 4.66934 4.74205 4.82231 4.98057 5.04153 5.10910 5.13178 5.22340 5.39860 5.42903 5.45718 5.75151 5.89161 5.97079 5.98151 6.16117 6.24665 6.63696 6.64662 6.73918 7.15697 7.35702 7.59700 8.16202 8.72386 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029147 B = 0.001780 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.407070 B =15728.053450 C =15942.426369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.080 3.920 15 C -0.125 4.125 16 C -0.132 4.132 17 C 0.166 3.834 18 N -0.709 5.709 19 C 0.582 3.418 20 O -0.602 6.602 21 C -0.273 4.273 22 C -0.187 4.187 23 C -0.003 4.003 24 N -0.535 5.535 25 H 0.438 0.562 26 C 0.071 3.929 27 C -0.071 4.071 28 C 0.051 3.949 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.130 0.870 40 H 0.203 0.797 41 H 0.206 0.794 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -27.895 9.091 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.073 4.073 13 N -0.258 5.258 14 C -0.048 4.048 15 C -0.145 4.145 16 C -0.132 4.132 17 C 0.042 3.958 18 N -0.360 5.360 19 C 0.373 3.627 20 O -0.484 6.484 21 C -0.284 4.284 22 C -0.211 4.211 23 C -0.132 4.132 24 N -0.131 5.131 25 H 0.279 0.721 26 C -0.068 4.068 27 C -0.108 4.108 28 C -0.076 4.076 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.249 0.751 39 H 0.148 0.852 40 H 0.220 0.780 41 H 0.223 0.777 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.844 -27.865 8.428 29.250 hybrid contribution -0.806 1.177 0.826 1.648 sum -3.650 -26.688 9.254 28.482 Atomic orbital electron populations 1.69661 1.06720 1.29254 1.50452 1.25989 0.96535 1.02260 0.96416 0.85023 0.77776 0.76889 0.78848 1.19914 1.19471 1.19799 1.19604 0.92643 0.84082 1.49849 0.90457 1.41925 1.09288 1.04650 1.65349 1.20858 0.88324 0.86018 0.82081 1.90470 1.15814 1.87767 1.56109 1.21773 0.93517 0.88353 1.03667 1.61964 1.25405 1.02786 1.35656 1.21012 0.96286 0.97592 0.89874 1.22208 0.99273 0.93514 0.99462 1.20899 0.98949 0.94716 0.98685 1.20138 0.94569 0.86850 0.94202 1.45727 1.23012 1.18104 1.49176 1.17906 0.83862 0.81168 0.79773 1.90732 1.23123 1.79134 1.55455 1.20470 0.99490 0.98906 1.09494 1.22099 1.01093 0.95020 1.02861 1.22213 0.88094 0.98895 1.03955 1.41681 1.18536 1.14862 1.38016 0.72128 1.22350 0.97233 0.92377 0.94793 1.20475 0.93763 0.99075 0.97455 1.22348 0.95760 0.87633 1.01866 0.91358 0.76996 0.91178 0.86939 0.91091 0.93245 0.86794 0.91401 0.92540 0.75089 0.85165 0.78035 0.77731 0.90808 0.88048 0.92899 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 10 C 0.44 20.66 7.54 87.66 0.66 21.33 16 11 O -0.62 -33.87 13.88 -3.07 -0.04 -33.92 16 12 C 0.06 1.92 5.44 85.56 0.47 2.39 16 13 N -0.53 -16.55 4.46 -905.56 -4.04 -20.59 16 14 C 0.08 2.50 5.22 85.39 0.45 2.94 16 15 C -0.13 -3.21 9.50 26.68 0.25 -2.96 16 16 C -0.13 -2.87 5.26 -15.40 -0.08 -2.95 16 17 C 0.17 3.67 5.72 85.63 0.49 4.16 16 18 N -0.71 -13.26 5.54 -470.25 -2.60 -15.86 16 19 C 0.58 14.49 7.81 86.62 0.68 15.17 16 20 O -0.60 -20.92 16.97 -4.09 -0.07 -20.98 16 21 C -0.27 -5.17 6.29 -19.04 -0.12 -5.29 16 22 C -0.19 -3.38 10.97 23.62 0.26 -3.13 16 23 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 24 N -0.54 -2.80 5.90 -194.56 -1.15 -3.95 16 25 H 0.44 -1.09 8.96 -92.71 -0.83 -1.92 16 26 C 0.07 0.65 11.40 83.92 0.96 1.61 16 27 C -0.07 -1.34 6.04 29.75 0.18 -1.16 16 28 C 0.05 1.06 5.59 86.26 0.48 1.55 16 29 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 31 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 32 H 0.11 3.24 7.94 -2.39 -0.02 3.22 16 33 H 0.07 2.90 5.98 -2.39 -0.01 2.88 16 34 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.11 2.79 7.81 -2.91 -0.02 2.76 16 36 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 37 H 0.06 1.43 7.85 -2.39 -0.02 1.42 16 38 H 0.41 4.95 7.41 -92.71 -0.69 4.26 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.20 0.40 8.06 -2.91 -0.02 0.38 16 41 H 0.21 0.32 7.45 -2.91 -0.02 0.30 16 42 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.09 1.68 7.92 -2.39 -0.02 1.66 16 Total: -1.00 -82.19 379.20 -1.48 -83.66 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -1.20 Total: 29.99 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.94 Total: 16.42 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -9.13 Total: -120.21 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.11 Total: -54.90 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -82.19 -1.48 -83.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677567439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.281 kcal (2) G-P(sol) polarization free energy of solvation -82.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds