Wall clock time and date at job start Tue Mar 31 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38574 * 119.96242 * 2 1 4 4 C 1.38827 * 118.06984 * 179.72986 * 3 2 1 5 5 C 1.39722 * 117.89104 * 0.51878 * 4 3 2 6 6 C 1.48163 * 120.18009 * 179.76698 * 5 4 3 7 7 O 1.21520 * 119.99574 * 359.72124 * 6 5 4 8 8 N 1.34771 * 120.00247 * 179.72367 * 6 5 4 9 9 C 1.46503 * 120.00286 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47045 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.37339 * 57.82096 * 10 9 8 12 12 C 1.54561 * 110.32111 * 179.97438 * 10 9 8 13 13 C 1.54764 * 104.07370 * 142.48943 * 12 10 9 14 14 C 1.53343 * 103.67787 * 359.13671 * 13 12 10 15 15 C 1.52321 * 116.12578 * 108.90886 * 14 13 12 16 16 N 1.47289 * 87.68603 * 91.18386 * 15 14 13 17 17 C 1.36929 * 135.92999 * 206.12489 * 16 15 14 18 18 H 1.08008 * 120.00050 * 7.80082 * 17 16 15 19 19 C 1.38812 * 120.00343 * 187.79804 * 17 16 15 20 20 N 1.31614 * 120.00431 * 195.40095 * 19 17 16 21 21 Si 1.86801 * 119.99684 * 15.40320 * 19 17 16 22 22 H 1.48496 * 109.47032 * 270.00019 * 21 19 17 23 23 H 1.48500 * 109.47116 * 149.99605 * 21 19 17 24 24 H 1.48509 * 109.47065 * 29.99943 * 21 19 17 25 25 C 1.47292 * 88.14051 * 26.38041 * 16 15 14 26 26 O 1.43095 * 106.44858 * 337.45461 * 14 13 12 27 27 N 1.32774 * 119.64187 * 359.48951 * 5 4 3 28 28 N 1.28356 * 122.02557 * 0.25275 * 27 5 4 29 29 H 1.08997 * 109.47297 * 269.97902 * 1 2 3 30 30 H 1.08999 * 109.47574 * 29.98598 * 1 2 3 31 31 H 1.08997 * 109.46719 * 149.98237 * 1 2 3 32 32 H 1.08003 * 120.97028 * 0.02562 * 3 2 1 33 33 H 1.07992 * 121.05399 * 180.28460 * 4 3 2 34 34 H 0.97007 * 119.99872 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46451 * 59.99885 * 9 8 6 36 36 H 1.08998 * 109.46796 * 299.99849 * 9 8 6 37 37 H 1.09004 * 110.50534 * 23.84490 * 12 10 9 38 38 H 1.08995 * 110.51129 * 261.14096 * 12 10 9 39 39 H 1.09007 * 110.58497 * 240.58933 * 13 12 10 40 40 H 1.09004 * 110.71379 * 117.75113 * 13 12 10 41 41 H 1.09002 * 113.51562 * 336.48092 * 15 14 13 42 42 H 1.08996 * 113.58099 * 205.90071 * 15 14 13 43 43 H 0.97007 * 119.99654 * 354.91483 * 20 19 17 44 44 H 1.08997 * 113.51508 * 88.32433 * 25 16 15 45 45 H 1.08994 * 113.51156 * 218.91211 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0058 5 6 4.1991 -0.1011 0.0001 6 6 5.6768 -0.2091 0.0006 7 8 6.3594 0.7963 0.0009 8 7 6.2638 -1.4222 0.0007 9 6 7.7249 -1.5290 0.0007 10 6 8.1284 -3.0048 0.0014 11 1 7.7035 -3.5148 -0.8631 12 6 9.6680 -3.1404 0.0008 13 6 9.9389 -4.3590 0.9155 14 6 8.5390 -4.7903 1.3691 15 6 8.0163 -6.0952 0.7824 16 7 8.6036 -6.7835 1.9446 17 6 9.0752 -8.0418 2.2078 18 1 9.1756 -8.7594 1.4068 19 6 9.4244 -8.3951 3.5040 20 7 10.1502 -9.4716 3.7198 21 14 8.8641 -7.3427 4.9420 22 1 9.8829 -6.2979 5.2173 23 1 8.6941 -8.1974 6.1443 24 1 7.5698 -6.6959 4.6074 25 6 8.4560 -5.5288 2.7018 26 8 7.6953 -3.6436 1.2250 27 7 3.4497 -1.1972 -0.0003 28 7 2.1672 -1.1450 -0.0003 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6743 2.1445 0.0004 33 1 4.1739 2.0609 0.0106 34 1 5.7188 -2.2248 0.0008 35 1 8.1247 -1.0429 0.8906 36 1 8.1247 -1.0432 -0.8894 37 1 10.1305 -2.2434 0.4127 38 1 10.0342 -3.3311 -1.0080 39 1 10.5465 -4.0675 1.7724 40 1 10.4246 -5.1596 0.3575 41 1 8.4839 -6.3644 -0.1647 42 1 6.9284 -6.1524 0.7470 43 1 10.3790 -10.0583 2.9819 44 1 7.4888 -5.4295 3.1945 45 1 9.2932 -5.3221 3.3683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687937681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:53 Heat of formation + Delta-G solvation = 42.060010 kcal Electronic energy + Delta-G solvation = -27840.342252 eV Core-core repulsion = 23860.742517 eV Total energy + Delta-G solvation = -3979.599735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.62529 -40.34312 -39.51550 -36.97428 -34.93366 -34.39014 -33.51657 -32.32595 -32.03392 -29.96667 -28.72878 -27.09154 -25.61013 -25.43998 -24.23582 -23.27770 -21.56209 -21.36197 -21.09137 -19.12120 -18.63153 -17.90491 -17.41122 -16.62630 -16.19154 -16.03941 -15.80508 -15.77085 -15.32634 -14.92192 -14.67732 -14.53276 -13.91888 -13.69675 -13.59752 -13.49157 -13.36351 -13.09358 -12.94231 -12.90342 -12.33471 -11.95248 -11.92013 -11.59341 -11.51271 -11.27660 -10.91739 -10.76102 -10.66606 -10.45770 -10.39157 -10.31583 -10.21250 -10.18539 -9.70887 -9.33358 -9.30965 -9.01658 -8.71655 -7.20312 -6.31922 -3.24303 0.00684 0.29658 2.28828 2.68026 3.23568 3.39751 3.43488 3.51817 3.64462 3.83236 3.89455 4.05986 4.20200 4.46590 4.50590 4.55820 4.59659 4.68253 4.85230 4.91274 4.93782 4.99752 5.00708 5.15892 5.19882 5.33573 5.35686 5.40331 5.44927 5.48902 5.57119 5.67816 5.77687 5.90583 6.10981 6.19873 6.21622 6.27188 6.31571 6.37075 6.39846 6.57611 7.07301 7.18180 7.27671 7.80005 8.14180 8.22389 8.95749 9.48693 10.34422 11.18119 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.002538 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.073182 B =11031.406403 C =12109.555617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.083 3.917 3 C -0.124 4.124 4 C -0.062 4.062 5 C 0.018 3.982 6 C 0.576 3.424 7 O -0.534 6.534 8 N -0.698 5.698 9 C 0.126 3.874 10 C 0.061 3.939 11 H 0.077 0.923 12 C -0.145 4.145 13 C -0.113 4.113 14 C 0.060 3.940 15 C 0.106 3.894 16 N -0.616 5.616 17 C -0.303 4.303 18 H 0.083 0.917 19 C -0.022 4.022 20 N -0.930 5.930 21 Si 1.058 2.942 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.117 3.883 26 O -0.353 6.353 27 N -0.201 5.201 28 N -0.239 5.239 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.261 0.739 44 H 0.054 0.946 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 24.787 -10.975 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.059 4.059 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.129 4.129 6 C 0.359 3.641 7 O -0.410 6.410 8 N -0.349 5.349 9 C 0.003 3.997 10 C 0.003 3.997 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.151 4.151 14 C 0.020 3.980 15 C -0.021 4.021 16 N -0.346 5.346 17 C -0.429 4.429 18 H 0.101 0.899 19 C -0.221 4.221 20 N -0.571 5.571 21 Si 0.889 3.111 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.206 1.206 25 C -0.009 4.009 26 O -0.271 6.271 27 N -0.048 5.048 28 N -0.084 5.084 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.192 23.823 -9.147 29.200 hybrid contribution -0.323 0.833 -1.725 1.943 sum -14.515 24.656 -10.872 30.608 Atomic orbital electron populations 1.20760 0.86923 1.04475 1.04095 1.23155 0.99510 0.90475 0.92792 1.22335 0.94229 1.00208 0.98524 1.22450 0.95086 0.99164 0.92372 1.22822 0.96410 0.92145 1.01506 1.17521 0.85227 0.84049 0.77311 1.90801 1.63573 1.36076 1.50548 1.45794 1.08259 1.08491 1.72371 1.21617 0.79300 0.95451 1.03350 1.23219 0.94796 0.92070 0.89632 0.90542 1.22951 0.94582 0.99636 1.01125 1.22324 0.96142 0.96954 0.99653 1.23591 0.89449 0.85083 0.99908 1.22712 0.96929 0.89342 0.93120 1.45977 1.70894 1.08007 1.09681 1.20086 1.39971 0.87151 0.95702 0.89909 1.25772 0.97900 1.00357 0.98077 1.70912 1.35736 1.15508 1.34992 0.83836 0.76583 0.74662 0.75987 1.22002 1.22132 1.20616 1.22602 0.99943 0.85257 0.93048 1.88961 1.57662 1.40104 1.40404 1.73258 0.99838 1.26033 1.05624 1.73145 1.00813 1.24521 1.09894 0.89304 0.89913 0.89493 0.82439 0.81907 0.74520 0.90075 0.89749 0.90399 0.90264 0.90366 0.89632 0.93490 0.93900 0.92827 0.92800 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.19 36.00 0.37 -0.06 16 2 C 0.08 0.64 6.87 -82.32 -0.57 0.08 16 3 C -0.12 -0.75 9.86 -39.24 -0.39 -1.14 16 4 C -0.06 -0.51 9.73 -38.81 -0.38 -0.88 16 5 C 0.02 0.20 6.83 -82.83 -0.57 -0.37 16 6 C 0.58 7.15 7.82 -12.19 -0.10 7.05 16 7 O -0.53 -7.60 16.39 5.35 0.09 -7.51 16 8 N -0.70 -8.26 5.51 -61.15 -0.34 -8.60 16 9 C 0.13 1.40 5.28 -4.04 -0.02 1.38 16 10 C 0.06 0.74 3.35 -25.91 -0.09 0.66 16 11 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.14 -1.65 6.65 -24.98 -0.17 -1.82 16 13 C -0.11 -1.74 6.50 -25.62 -0.17 -1.91 16 14 C 0.06 1.09 1.39 -91.01 -0.13 0.96 16 15 C 0.11 2.14 8.18 -7.83 -0.06 2.08 16 16 N -0.62 -15.32 3.61 -184.83 -0.67 -15.99 16 17 C -0.30 -8.74 11.03 -15.06 -0.17 -8.91 16 18 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 19 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 20 N -0.93 -29.35 13.70 55.49 0.76 -28.59 16 21 Si 1.06 26.97 25.51 -169.99 -4.34 22.64 16 22 H -0.29 -7.12 6.97 56.52 0.39 -6.73 16 23 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 24 H -0.28 -6.75 5.64 56.52 0.32 -6.43 16 25 C 0.12 2.58 5.19 -7.69 -0.04 2.54 16 26 O -0.35 -5.72 11.12 -35.23 -0.39 -6.11 16 27 N -0.20 -2.47 10.75 33.32 0.36 -2.11 16 28 N -0.24 -2.71 11.43 33.62 0.38 -2.32 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.14 8.09 -51.93 -0.42 -0.28 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.16 0.35 8.06 -52.48 -0.42 -0.07 16 33 H 0.16 1.08 7.72 -52.49 -0.41 0.68 16 34 H 0.42 4.96 7.83 -40.82 -0.32 4.64 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 40 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 41 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 44 H 0.05 1.21 6.97 -51.93 -0.36 0.85 16 45 H 0.06 1.29 6.28 -51.93 -0.33 0.96 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -35.50 372.81 -7.62 -43.12 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.54 Total: 0.93 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.56 Total: -1.08 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.50 Total: -57.60 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.30 Total: -13.62 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.34 Total: 22.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.50 -7.62 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687937681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.182 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds