Wall clock time and date at job start Tue Mar 31 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38574 * 119.96242 * 2 1 4 4 C 1.38827 * 118.06984 * 179.72986 * 3 2 1 5 5 C 1.39722 * 117.89104 * 0.51878 * 4 3 2 6 6 C 1.48163 * 120.18009 * 179.76698 * 5 4 3 7 7 O 1.21520 * 119.99574 * 359.72124 * 6 5 4 8 8 N 1.34771 * 120.00247 * 179.72367 * 6 5 4 9 9 C 1.46503 * 120.00286 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47045 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.37339 * 57.82096 * 10 9 8 12 12 C 1.54561 * 110.32111 * 179.97438 * 10 9 8 13 13 C 1.54764 * 104.07370 * 142.48943 * 12 10 9 14 14 C 1.53343 * 103.67787 * 359.13671 * 13 12 10 15 15 C 1.52321 * 116.12578 * 108.90886 * 14 13 12 16 16 N 1.47289 * 87.68603 * 91.18386 * 15 14 13 17 17 C 1.36929 * 135.92999 * 206.12489 * 16 15 14 18 18 H 1.08008 * 120.00050 * 7.80082 * 17 16 15 19 19 C 1.38812 * 120.00343 * 187.79804 * 17 16 15 20 20 N 1.31614 * 120.00431 * 195.40095 * 19 17 16 21 21 Si 1.86801 * 119.99684 * 15.40320 * 19 17 16 22 22 H 1.48496 * 109.47032 * 270.00019 * 21 19 17 23 23 H 1.48500 * 109.47116 * 149.99605 * 21 19 17 24 24 H 1.48509 * 109.47065 * 29.99943 * 21 19 17 25 25 C 1.47292 * 88.14051 * 26.38041 * 16 15 14 26 26 O 1.43095 * 106.44858 * 337.45461 * 14 13 12 27 27 N 1.32774 * 119.64187 * 359.48951 * 5 4 3 28 28 N 1.28356 * 122.02557 * 0.25275 * 27 5 4 29 29 H 1.08997 * 109.47297 * 269.97902 * 1 2 3 30 30 H 1.08999 * 109.47574 * 29.98598 * 1 2 3 31 31 H 1.08997 * 109.46719 * 149.98237 * 1 2 3 32 32 H 1.08003 * 120.97028 * 0.02562 * 3 2 1 33 33 H 1.07992 * 121.05399 * 180.28460 * 4 3 2 34 34 H 0.97007 * 119.99872 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46451 * 59.99885 * 9 8 6 36 36 H 1.08998 * 109.46796 * 299.99849 * 9 8 6 37 37 H 1.09004 * 110.50534 * 23.84490 * 12 10 9 38 38 H 1.08995 * 110.51129 * 261.14096 * 12 10 9 39 39 H 1.09007 * 110.58497 * 240.58933 * 13 12 10 40 40 H 1.09004 * 110.71379 * 117.75113 * 13 12 10 41 41 H 1.09002 * 113.51562 * 336.48092 * 15 14 13 42 42 H 1.08996 * 113.58099 * 205.90071 * 15 14 13 43 43 H 0.97007 * 119.99654 * 354.91483 * 20 19 17 44 44 H 1.08997 * 113.51508 * 88.32433 * 25 16 15 45 45 H 1.08994 * 113.51156 * 218.91211 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0058 5 6 4.1991 -0.1011 0.0001 6 6 5.6768 -0.2091 0.0006 7 8 6.3594 0.7963 0.0009 8 7 6.2638 -1.4222 0.0007 9 6 7.7249 -1.5290 0.0007 10 6 8.1284 -3.0048 0.0014 11 1 7.7035 -3.5148 -0.8631 12 6 9.6680 -3.1404 0.0008 13 6 9.9389 -4.3590 0.9155 14 6 8.5390 -4.7903 1.3691 15 6 8.0163 -6.0952 0.7824 16 7 8.6036 -6.7835 1.9446 17 6 9.0752 -8.0418 2.2078 18 1 9.1756 -8.7594 1.4068 19 6 9.4244 -8.3951 3.5040 20 7 10.1502 -9.4716 3.7198 21 14 8.8641 -7.3427 4.9420 22 1 9.8829 -6.2979 5.2173 23 1 8.6941 -8.1974 6.1443 24 1 7.5698 -6.6959 4.6074 25 6 8.4560 -5.5288 2.7018 26 8 7.6953 -3.6436 1.2250 27 7 3.4497 -1.1972 -0.0003 28 7 2.1672 -1.1450 -0.0003 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6743 2.1445 0.0004 33 1 4.1739 2.0609 0.0106 34 1 5.7188 -2.2248 0.0008 35 1 8.1247 -1.0429 0.8906 36 1 8.1247 -1.0432 -0.8894 37 1 10.1305 -2.2434 0.4127 38 1 10.0342 -3.3311 -1.0080 39 1 10.5465 -4.0675 1.7724 40 1 10.4246 -5.1596 0.3575 41 1 8.4839 -6.3644 -0.1647 42 1 6.9284 -6.1524 0.7470 43 1 10.3790 -10.0583 2.9819 44 1 7.4888 -5.4295 3.1945 45 1 9.2932 -5.3221 3.3683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687937681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:52 Heat of formation + Delta-G solvation = 14.434118 kcal Electronic energy + Delta-G solvation = -27841.540200 eV Core-core repulsion = 23860.742517 eV Total energy + Delta-G solvation = -3980.797683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.31874 -41.69063 -40.48233 -38.42995 -35.92981 -35.05552 -34.47589 -34.17308 -33.15330 -31.10635 -29.64189 -28.58803 -27.21552 -26.30140 -25.20445 -24.07700 -23.30439 -22.33746 -22.02264 -20.75623 -19.58285 -19.38897 -18.59275 -17.68816 -17.41771 -16.99729 -16.69716 -16.64565 -16.39171 -16.28513 -15.79412 -15.72568 -15.35155 -15.12452 -14.69423 -14.56852 -14.25260 -14.18165 -13.82853 -13.58519 -13.38389 -13.22557 -13.20924 -12.73261 -12.68018 -12.60869 -12.45605 -12.25914 -12.15609 -11.67605 -11.47727 -11.36706 -11.31576 -11.28660 -10.86901 -10.86046 -10.84492 -10.52892 -10.23610 -9.30572 -8.65321 -5.50696 -0.65872 -0.29942 1.37576 1.48140 1.48622 1.63285 1.84930 2.48814 2.51014 2.56039 2.73888 3.02815 3.15856 3.30222 3.38483 3.49507 3.57638 3.66254 3.70211 3.84954 3.94907 3.98090 4.09683 4.34519 4.42733 4.47076 4.55354 4.56774 4.60781 4.63457 4.68398 4.75813 4.79365 4.83892 4.93556 4.95269 5.00567 5.01021 5.09878 5.12292 5.22651 5.25174 5.29832 5.91184 5.95996 6.26117 6.65658 6.88596 7.28079 7.45809 8.21712 8.86336 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.002538 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.073182 B =11031.406403 C =12109.555617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.080 3.920 3 C -0.104 4.104 4 C -0.068 4.068 5 C -0.003 4.003 6 C 0.576 3.424 7 O -0.557 6.557 8 N -0.700 5.700 9 C 0.130 3.870 10 C 0.060 3.940 11 H 0.089 0.911 12 C -0.132 4.132 13 C -0.116 4.116 14 C 0.084 3.916 15 C 0.104 3.896 16 N -0.643 5.643 17 C -0.289 4.289 18 H 0.056 0.944 19 C -0.078 4.078 20 N -0.964 5.964 21 Si 1.095 2.905 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.106 3.894 26 O -0.364 6.364 27 N -0.231 5.231 28 N -0.278 5.278 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.205 0.795 33 H 0.177 0.823 34 H 0.417 0.583 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.051 0.949 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 28.636 -11.881 35.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.097 4.097 5 C -0.150 4.150 6 C 0.360 3.640 7 O -0.435 6.435 8 N -0.350 5.350 9 C 0.007 3.993 10 C 0.002 3.998 11 H 0.107 0.893 12 C -0.170 4.170 13 C -0.154 4.154 14 C 0.043 3.957 15 C -0.021 4.021 16 N -0.373 5.373 17 C -0.417 4.417 18 H 0.073 0.927 19 C -0.271 4.271 20 N -0.609 5.609 21 Si 0.921 3.079 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.188 1.188 25 C -0.019 4.019 26 O -0.283 6.283 27 N -0.077 5.077 28 N -0.122 5.122 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.222 0.778 33 H 0.195 0.805 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.749 27.695 -10.098 33.422 hybrid contribution 0.011 -0.296 -1.572 1.600 sum -15.738 27.399 -11.670 33.683 Atomic orbital electron populations 1.20921 0.84312 1.05737 1.05107 1.23798 1.01192 0.90155 0.91137 1.22836 0.93284 1.01455 0.95691 1.22717 0.96327 0.98476 0.92139 1.22791 0.95679 0.93351 1.03146 1.17728 0.85882 0.83744 0.76654 1.90774 1.64255 1.36620 1.51863 1.45858 1.08602 1.08430 1.72079 1.21643 0.79017 0.94609 1.04039 1.23449 0.95566 0.92487 0.88280 0.89323 1.22939 0.93817 0.98450 1.01762 1.22346 0.94176 0.98423 1.00435 1.23111 0.91165 0.85022 0.96428 1.22876 0.96991 0.90007 0.92258 1.45987 1.71629 1.07515 1.12215 1.19944 1.38502 0.88373 0.94838 0.92658 1.26941 0.98181 1.01113 1.00829 1.71007 1.38365 1.16913 1.34598 0.83368 0.77468 0.73912 0.73168 1.20052 1.22649 1.18767 1.22731 0.99501 0.84674 0.94956 1.88948 1.57600 1.39240 1.42484 1.73154 1.00591 1.27006 1.06955 1.73053 1.00608 1.26834 1.11722 0.88190 0.86707 0.90198 0.77803 0.80520 0.74669 0.90727 0.87658 0.88494 0.87682 0.90432 0.90580 0.92348 0.93586 0.94178 0.93126 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.19 71.24 0.73 0.19 16 2 C 0.08 1.06 6.87 42.59 0.29 1.35 16 3 C -0.10 -0.92 9.86 22.49 0.22 -0.70 16 4 C -0.07 -0.98 9.73 22.77 0.22 -0.76 16 5 C 0.00 -0.06 6.83 42.00 0.29 0.23 16 6 C 0.58 13.87 7.82 86.88 0.68 14.55 16 7 O -0.56 -15.28 16.39 -3.78 -0.06 -15.34 16 8 N -0.70 -15.80 5.51 -465.67 -2.56 -18.37 16 9 C 0.13 2.59 5.28 86.38 0.46 3.04 16 10 C 0.06 1.29 3.35 31.12 0.10 1.40 16 11 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.13 -2.56 6.65 31.73 0.21 -2.34 16 13 C -0.12 -3.33 6.50 31.31 0.20 -3.12 16 14 C 0.08 2.90 1.39 -11.03 -0.02 2.88 16 15 C 0.10 4.14 8.18 83.49 0.68 4.82 16 16 N -0.64 -32.02 3.61 -740.15 -2.67 -34.69 16 17 C -0.29 -17.07 11.03 84.03 0.93 -16.14 16 18 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 19 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 20 N -0.96 -62.76 13.70 21.65 0.30 -62.46 16 21 Si 1.10 54.90 25.51 68.60 1.75 56.65 16 22 H -0.27 -12.81 6.97 99.48 0.69 -12.12 16 23 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.26 -12.24 5.64 99.48 0.56 -11.68 16 25 C 0.11 4.59 5.19 83.58 0.43 5.03 16 26 O -0.36 -11.10 11.12 -148.98 -1.66 -12.75 16 27 N -0.23 -5.67 10.75 -48.48 -0.52 -6.19 16 28 N -0.28 -6.15 11.43 -47.53 -0.54 -6.70 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.11 -0.13 8.09 -2.39 -0.02 -0.15 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.20 -0.20 8.06 -2.91 -0.02 -0.22 16 33 H 0.18 1.96 7.72 -2.91 -0.02 1.94 16 34 H 0.42 9.66 7.83 -92.70 -0.73 8.94 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.25 8.12 -2.38 -0.02 2.23 16 40 H 0.08 2.34 7.92 -2.38 -0.02 2.32 16 41 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.25 16.19 8.73 -92.70 -0.81 15.38 16 44 H 0.05 2.23 6.97 -2.39 -0.02 2.21 16 45 H 0.06 2.39 6.28 -2.39 -0.02 2.38 16 Total: -1.00 -80.48 372.81 0.02 -80.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.09 Total: 13.23 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.90 Total: 6.16 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -6.00 Total: -128.41 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.72 Total: -28.09 kcal Atomic # 14 Polarization: 54.90 SS G_CDS: 1.75 Total: 56.65 kcal Total: -80.48 0.02 -80.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687937681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.898 kcal (2) G-P(sol) polarization free energy of solvation -80.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds