Wall clock time and date at job start Tue Mar 31 2020 17:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34654 * 125.80536 * 2 1 4 4 H 0.96996 * 124.84892 * 359.96034 * 3 2 1 5 5 C 1.36452 * 110.30114 * 179.97438 * 3 2 1 6 6 C 1.34489 * 108.85062 * 359.75110 * 5 3 2 7 7 C 1.36779 * 125.79948 * 179.97438 * 2 1 3 8 8 C 1.47262 * 126.93839 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00688 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99714 * 180.02562 * 8 7 2 11 11 C 1.48038 * 126.94649 * 0.02562 * 10 8 7 12 12 C 1.56025 * 105.15235 * 181.87770 * 11 10 8 13 13 H 1.09003 * 116.90674 * 159.28760 * 12 11 10 14 14 C 1.57075 * 99.59851 * 32.86593 * 12 11 10 15 15 C 1.49281 * 126.92902 * 180.02562 * 10 8 7 16 16 H 1.09002 * 116.75257 * 16.43214 * 15 10 8 17 17 C 1.56011 * 104.12592 * 246.86232 * 15 10 8 18 18 N 1.48282 * 105.16061 * 288.84485 * 17 15 10 19 19 C 1.46897 * 110.99993 * 122.49079 * 18 17 15 20 20 C 1.50709 * 109.46618 * 76.51853 * 19 18 17 21 21 O 1.21283 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99494 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99191 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00634 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99490 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99997 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99941 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46980 * 90.00625 * 27 25 23 29 29 H 1.48504 * 109.47331 * 210.00216 * 27 25 23 30 30 H 1.48497 * 109.47397 * 330.00614 * 27 25 23 31 31 H 1.09004 * 109.47072 * 270.02248 * 1 2 3 32 32 H 1.09005 * 109.46959 * 30.01934 * 1 2 3 33 33 H 1.08996 * 109.47393 * 150.02248 * 1 2 3 34 34 H 1.07991 * 125.57572 * 179.97438 * 5 3 2 35 35 H 1.08004 * 126.82725 * 180.24735 * 6 5 3 36 36 H 1.08998 * 110.24485 * 62.97815 * 11 10 8 37 37 H 1.08998 * 110.34797 * 300.82611 * 11 10 8 38 38 H 1.09000 * 112.36374 * 64.33395 * 14 12 11 39 39 H 1.09003 * 112.35934 * 191.75214 * 14 12 11 40 40 H 1.09000 * 110.32180 * 169.89513 * 17 15 10 41 41 H 1.08998 * 110.32274 * 47.79616 * 17 15 10 42 42 H 1.09001 * 109.46793 * 196.51557 * 19 18 17 43 43 H 1.08997 * 109.47605 * 316.51708 * 19 18 17 44 44 H 0.96990 * 119.99989 * 0.02562 * 22 20 19 45 45 H 0.97003 * 120.00034 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0006 5 6 3.6096 0.7273 0.0006 6 6 3.6881 -0.6153 0.0065 7 6 2.3071 -1.1094 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.6838 -2.7840 0.0027 10 7 2.7848 -3.5055 0.0025 11 6 4.2576 -3.3561 0.0030 12 6 4.8154 -4.8124 -0.0453 13 1 5.8398 -4.9369 -0.3962 14 6 3.6916 -5.4948 -0.9048 15 6 2.5171 -4.9741 0.0032 16 1 1.5108 -5.2896 -0.2723 17 6 3.0332 -5.4546 1.3949 18 7 4.5110 -5.3645 1.3128 19 6 5.0446 -4.4922 2.3674 20 6 5.0329 -5.2289 3.6822 21 8 4.6210 -6.3684 3.7351 22 7 5.4811 -4.6216 4.7988 23 6 5.4699 -5.2916 5.9949 24 1 5.1024 -6.3060 6.0423 25 6 5.9325 -4.6657 7.1460 26 7 6.3802 -3.4316 7.0883 27 14 5.9167 -5.5782 8.7759 28 1 7.2021 -6.3009 8.9511 29 1 5.7397 -4.6071 9.8853 30 1 4.7958 -6.5522 8.7870 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 4.4498 1.4057 0.0003 35 1 4.5890 -1.2111 0.0121 36 1 4.5856 -2.8553 0.9139 37 1 4.5822 -2.7973 -0.8747 38 1 3.6421 -5.0931 -1.9169 39 1 3.7686 -6.5821 -0.9000 40 1 2.7263 -6.4844 1.5776 41 1 2.6574 -4.8028 2.1836 42 1 6.0671 -4.2068 2.1200 43 1 4.4267 -3.5978 2.4466 44 1 5.8109 -3.7104 4.7563 45 1 6.7028 -2.9946 7.8919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692360111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:25 Heat of formation + Delta-G solvation = 29.035134 kcal Electronic energy + Delta-G solvation = -29091.635204 eV Core-core repulsion = 25111.470668 eV Total energy + Delta-G solvation = -3980.164536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55213 -40.83264 -38.29659 -37.66004 -34.11418 -33.53692 -31.89286 -31.64626 -31.12897 -30.24917 -29.70929 -26.71730 -26.46405 -25.00344 -24.12383 -22.78304 -21.19007 -20.46069 -20.19540 -19.21370 -18.29663 -17.84681 -17.62021 -16.62151 -16.44868 -15.77644 -15.34082 -14.95271 -14.75673 -14.56721 -14.31387 -13.92738 -13.77125 -13.58218 -13.32478 -13.24561 -12.99702 -12.74701 -12.57922 -12.51470 -12.17155 -12.02879 -11.93797 -11.70925 -11.51228 -11.47189 -11.19375 -11.05714 -11.04644 -10.75481 -10.35825 -10.16826 -9.79444 -9.44704 -9.01303 -8.72706 -8.40875 -8.24549 -7.90767 -7.80986 -6.36640 -3.76922 1.65884 2.28742 2.81316 3.15260 3.21305 3.29352 3.35602 3.54533 3.89763 3.98054 4.24823 4.31117 4.49842 4.65240 4.77169 4.79779 4.98301 5.00838 5.02688 5.12907 5.29289 5.30801 5.35702 5.44911 5.47703 5.55929 5.67311 5.72143 5.76321 5.77890 5.84460 5.85981 5.88602 6.02147 6.07696 6.19647 6.34623 6.42568 6.59374 6.78669 7.04710 7.20796 7.24481 7.60012 7.64909 8.11855 8.34517 8.68124 9.24058 9.60754 10.13358 10.81374 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003362 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.294569 B = 8325.459929 C = 9570.122785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.104 3.896 3 N -0.553 5.553 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.174 4.174 7 C -0.232 4.232 8 C 0.609 3.391 9 O -0.554 6.554 10 N -0.614 5.614 11 C 0.063 3.937 12 C 0.048 3.952 13 H 0.135 0.865 14 C -0.132 4.132 15 C 0.109 3.891 16 H 0.126 0.874 17 C 0.042 3.958 18 N -0.487 5.487 19 C 0.034 3.966 20 C 0.446 3.554 21 O -0.575 6.575 22 N -0.568 5.568 23 C -0.296 4.296 24 H 0.102 0.898 25 C 0.021 3.979 26 N -0.904 5.904 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 10.640 -18.923 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 N -0.149 5.149 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.197 4.197 7 C -0.242 4.242 8 C 0.402 3.598 9 O -0.434 6.434 10 N -0.348 5.348 11 C -0.061 4.061 12 C -0.060 4.060 13 H 0.152 0.848 14 C -0.171 4.171 15 C 0.006 3.994 16 H 0.143 0.857 17 C -0.087 4.087 18 N -0.211 5.211 19 C -0.097 4.097 20 C 0.231 3.769 21 O -0.458 6.458 22 N -0.205 5.205 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.546 5.546 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.187 0.813 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.399 9.537 -18.613 21.600 hybrid contribution 0.084 1.694 0.940 1.940 sum -5.315 11.231 -17.673 21.604 Atomic orbital electron populations 1.20572 0.87030 1.04017 1.03588 1.20322 0.93692 0.85635 1.01723 1.41602 1.06326 1.08332 1.58616 0.74884 1.21779 0.85603 0.96543 1.10669 1.22496 0.96251 0.93701 1.07292 1.20055 0.93351 0.91777 1.18970 1.16980 0.84270 0.83375 0.75220 1.90720 1.16126 1.84138 1.52446 1.48978 1.06251 1.06030 1.73527 1.23560 0.80719 0.99429 1.02414 1.24820 0.99691 0.90637 0.90871 0.84782 1.23960 0.93792 1.01687 0.97612 1.24160 0.99834 0.79032 0.96394 0.85658 1.23624 0.87394 1.02528 0.95149 1.64636 1.10498 1.45938 1.00000 1.22139 1.00622 0.94465 0.92497 1.19739 0.84434 0.88027 0.84669 1.90516 1.50993 1.18460 1.85811 1.41847 1.56223 1.15678 1.06733 1.19690 1.39325 0.99480 0.84087 0.87988 1.25231 0.97089 0.95920 0.99728 1.69613 1.42940 1.11867 1.30144 0.85879 0.78796 0.78858 0.80884 1.20433 1.21007 1.19448 0.90358 0.91963 0.88071 0.81326 0.83039 0.89967 0.90781 0.90083 0.88506 0.88963 0.92136 0.89389 0.92836 0.77620 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.88 36.01 0.36 -0.57 16 2 C 0.10 1.18 7.18 -81.88 -0.59 0.60 16 3 N -0.55 -4.63 5.90 -9.11 -0.05 -4.68 16 4 H 0.41 2.03 8.96 -40.82 -0.37 1.66 16 5 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 6 C -0.17 -1.92 9.54 -37.50 -0.36 -2.28 16 7 C -0.23 -3.12 6.24 -103.35 -0.64 -3.76 16 8 C 0.61 9.50 7.89 -12.59 -0.10 9.40 16 9 O -0.55 -9.92 15.18 5.26 0.08 -9.84 16 10 N -0.61 -8.51 2.95 -157.81 -0.47 -8.97 16 11 C 0.06 0.72 4.01 -1.58 -0.01 0.72 16 12 C 0.05 0.56 5.21 -62.30 -0.32 0.24 16 13 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.13 -1.42 6.81 -22.17 -0.15 -1.57 16 15 C 0.11 1.46 5.24 -62.42 -0.33 1.14 16 16 H 0.13 1.64 8.08 -51.93 -0.42 1.22 16 17 C 0.04 0.69 5.43 -1.45 -0.01 0.68 16 18 N -0.49 -7.92 4.84 -218.16 -1.06 -8.97 16 19 C 0.03 0.61 4.13 -4.97 -0.02 0.59 16 20 C 0.45 10.73 7.63 -10.98 -0.08 10.65 16 21 O -0.57 -15.86 15.47 5.55 0.09 -15.78 16 22 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 23 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 24 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 27 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 1.19 6.47 -51.93 -0.34 0.85 16 34 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.15 1.48 4.88 -52.48 -0.26 1.23 16 36 H 0.08 1.02 4.59 -51.93 -0.24 0.78 16 37 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.16 7.42 -51.93 -0.39 0.78 16 42 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 43 H 0.05 0.93 6.11 -51.93 -0.32 0.62 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -35.82 361.56 -8.90 -44.72 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.89 Total: 13.16 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -2.70 Total: 7.39 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.91 Total: -61.49 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.17 Total: -25.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.82 -8.90 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692360111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.753 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds