Wall clock time and date at job start Tue Mar 31 2020 17:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34654 * 125.80536 * 2 1 4 4 H 0.96996 * 124.84892 * 359.96034 * 3 2 1 5 5 C 1.36452 * 110.30114 * 179.97438 * 3 2 1 6 6 C 1.34489 * 108.85062 * 359.75110 * 5 3 2 7 7 C 1.36779 * 125.79948 * 179.97438 * 2 1 3 8 8 C 1.47262 * 126.93839 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00688 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99714 * 180.02562 * 8 7 2 11 11 C 1.48038 * 126.94649 * 0.02562 * 10 8 7 12 12 C 1.56025 * 105.15235 * 181.87770 * 11 10 8 13 13 H 1.09003 * 116.90674 * 159.28760 * 12 11 10 14 14 C 1.57075 * 99.59851 * 32.86593 * 12 11 10 15 15 C 1.49281 * 126.92902 * 180.02562 * 10 8 7 16 16 H 1.09002 * 116.75257 * 16.43214 * 15 10 8 17 17 C 1.56011 * 104.12592 * 246.86232 * 15 10 8 18 18 N 1.48282 * 105.16061 * 288.84485 * 17 15 10 19 19 C 1.46897 * 110.99993 * 122.49079 * 18 17 15 20 20 C 1.50709 * 109.46618 * 76.51853 * 19 18 17 21 21 O 1.21283 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99494 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99191 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00634 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99490 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99997 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99941 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46980 * 90.00625 * 27 25 23 29 29 H 1.48504 * 109.47331 * 210.00216 * 27 25 23 30 30 H 1.48497 * 109.47397 * 330.00614 * 27 25 23 31 31 H 1.09004 * 109.47072 * 270.02248 * 1 2 3 32 32 H 1.09005 * 109.46959 * 30.01934 * 1 2 3 33 33 H 1.08996 * 109.47393 * 150.02248 * 1 2 3 34 34 H 1.07991 * 125.57572 * 179.97438 * 5 3 2 35 35 H 1.08004 * 126.82725 * 180.24735 * 6 5 3 36 36 H 1.08998 * 110.24485 * 62.97815 * 11 10 8 37 37 H 1.08998 * 110.34797 * 300.82611 * 11 10 8 38 38 H 1.09000 * 112.36374 * 64.33395 * 14 12 11 39 39 H 1.09003 * 112.35934 * 191.75214 * 14 12 11 40 40 H 1.09000 * 110.32180 * 169.89513 * 17 15 10 41 41 H 1.08998 * 110.32274 * 47.79616 * 17 15 10 42 42 H 1.09001 * 109.46793 * 196.51557 * 19 18 17 43 43 H 1.08997 * 109.47605 * 316.51708 * 19 18 17 44 44 H 0.96990 * 119.99989 * 0.02562 * 22 20 19 45 45 H 0.97003 * 120.00034 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0006 5 6 3.6096 0.7273 0.0006 6 6 3.6881 -0.6153 0.0065 7 6 2.3071 -1.1094 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.6838 -2.7840 0.0027 10 7 2.7848 -3.5055 0.0025 11 6 4.2576 -3.3561 0.0030 12 6 4.8154 -4.8124 -0.0453 13 1 5.8398 -4.9369 -0.3962 14 6 3.6916 -5.4948 -0.9048 15 6 2.5171 -4.9741 0.0032 16 1 1.5108 -5.2896 -0.2723 17 6 3.0332 -5.4546 1.3949 18 7 4.5110 -5.3645 1.3128 19 6 5.0446 -4.4922 2.3674 20 6 5.0329 -5.2289 3.6822 21 8 4.6210 -6.3684 3.7351 22 7 5.4811 -4.6216 4.7988 23 6 5.4699 -5.2916 5.9949 24 1 5.1024 -6.3060 6.0423 25 6 5.9325 -4.6657 7.1460 26 7 6.3802 -3.4316 7.0883 27 14 5.9167 -5.5782 8.7759 28 1 7.2021 -6.3009 8.9511 29 1 5.7397 -4.6071 9.8853 30 1 4.7958 -6.5522 8.7870 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 4.4498 1.4057 0.0003 35 1 4.5890 -1.2111 0.0121 36 1 4.5856 -2.8553 0.9139 37 1 4.5822 -2.7973 -0.8747 38 1 3.6421 -5.0931 -1.9169 39 1 3.7686 -6.5821 -0.9000 40 1 2.7263 -6.4844 1.5776 41 1 2.6574 -4.8028 2.1836 42 1 6.0671 -4.2068 2.1200 43 1 4.4267 -3.5978 2.4466 44 1 5.8109 -3.7104 4.7563 45 1 6.7028 -2.9946 7.8919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692360111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:24 Heat of formation + Delta-G solvation = 1.460110 kcal Electronic energy + Delta-G solvation = -29092.830947 eV Core-core repulsion = 25111.470668 eV Total energy + Delta-G solvation = -3981.360278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48571 -41.80376 -39.93030 -39.10757 -36.00666 -34.95493 -33.32216 -32.78777 -32.44987 -31.25088 -30.79517 -28.16507 -27.47036 -26.21347 -25.76419 -23.84193 -22.03583 -21.56191 -21.35639 -20.77943 -19.92786 -19.22895 -18.55226 -18.02634 -17.49361 -17.14612 -16.75007 -16.33236 -16.18427 -15.89939 -15.64431 -15.40258 -15.06243 -14.73470 -14.59523 -14.12614 -14.01726 -13.86928 -13.66615 -13.58436 -13.48690 -13.43219 -13.26343 -13.05094 -12.92128 -12.55227 -12.49591 -12.41766 -12.23815 -12.14476 -12.08680 -12.03685 -11.49015 -10.94982 -10.34943 -9.99483 -9.88251 -9.70513 -9.20068 -9.02985 -8.45898 -5.94274 0.71527 1.37507 1.40578 1.53386 1.54614 1.87539 2.07370 2.28122 2.40454 2.50826 2.69356 3.20176 3.30112 3.36226 3.59417 3.69951 3.89840 3.93832 3.99019 4.19853 4.25697 4.27463 4.29905 4.38625 4.51784 4.52521 4.56607 4.65647 4.67749 4.73178 4.86434 4.93930 4.95992 4.98982 5.03312 5.07455 5.21733 5.33258 5.41076 5.78541 5.78725 5.86366 5.99000 6.07576 6.57073 6.62069 6.67258 7.14306 7.23388 7.57832 8.14613 8.71667 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003362 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.294569 B = 8325.459929 C = 9570.122785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.537 5.537 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.195 4.195 7 C -0.270 4.270 8 C 0.597 3.403 9 O -0.594 6.594 10 N -0.616 5.616 11 C 0.066 3.934 12 C 0.055 3.945 13 H 0.170 0.830 14 C -0.114 4.114 15 C 0.107 3.893 16 H 0.122 0.878 17 C 0.046 3.954 18 N -0.505 5.505 19 C 0.053 3.947 20 C 0.440 3.560 21 O -0.616 6.616 22 N -0.576 5.576 23 C -0.333 4.333 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.991 3.009 28 H -0.268 1.268 29 H -0.270 1.270 30 H -0.276 1.276 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.207 0.793 35 H 0.162 0.838 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.022 0.978 42 H 0.120 0.880 43 H 0.058 0.942 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 12.700 -20.294 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.218 4.218 7 C -0.280 4.280 8 C 0.390 3.610 9 O -0.477 6.477 10 N -0.349 5.349 11 C -0.057 4.057 12 C -0.052 4.052 13 H 0.187 0.813 14 C -0.152 4.152 15 C 0.003 3.997 16 H 0.139 0.861 17 C -0.083 4.083 18 N -0.229 5.229 19 C -0.078 4.078 20 C 0.227 3.773 21 O -0.502 6.502 22 N -0.214 5.214 23 C -0.462 4.462 24 H 0.094 0.906 25 C -0.211 4.211 26 N -0.562 5.562 27 Si 0.815 3.185 28 H -0.194 1.194 29 H -0.195 1.195 30 H -0.201 1.201 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.224 0.776 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.138 0.862 43 H 0.076 0.924 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.553 11.645 -20.008 23.421 hybrid contribution -0.503 1.080 1.352 1.802 sum -4.055 12.725 -18.656 22.944 Atomic orbital electron populations 1.20518 0.86565 1.04395 1.03387 1.20485 0.94324 0.86173 1.01381 1.41616 1.06076 1.08642 1.57101 0.72717 1.22364 0.86384 0.96391 1.07928 1.22688 0.95471 0.94921 1.08760 1.20180 0.95327 0.91050 1.21414 1.17493 0.84040 0.84670 0.74766 1.90681 1.17709 1.84892 1.54448 1.49061 1.07308 1.05698 1.72822 1.23658 0.79115 0.99571 1.03404 1.25132 1.01660 0.90420 0.87948 0.81329 1.23930 0.91313 1.01986 0.97986 1.24138 1.00861 0.79469 0.95215 0.86056 1.23442 0.88246 1.00609 0.96004 1.64558 1.09813 1.46611 1.01920 1.21932 1.02663 0.93584 0.89651 1.20877 0.82337 0.87777 0.86271 1.90481 1.52300 1.20598 1.86810 1.41914 1.56869 1.15804 1.06789 1.19638 1.41435 0.99164 0.86009 0.90586 1.25997 0.96002 0.96706 1.02438 1.69669 1.42576 1.12573 1.31342 0.84962 0.78795 0.77837 0.76947 1.19370 1.19507 1.20061 0.90804 0.88687 0.90548 0.77591 0.82036 0.90704 0.87771 0.87524 0.88005 0.90870 0.95955 0.86161 0.92373 0.77123 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.88 71.24 0.70 -1.06 16 2 C 0.10 2.09 7.18 41.78 0.30 2.39 16 3 N -0.54 -7.54 5.90 -182.72 -1.08 -8.62 16 4 H 0.43 2.80 8.96 -92.71 -0.83 1.97 16 5 C 0.00 -0.04 11.89 83.12 0.99 0.94 16 6 C -0.20 -3.89 9.54 23.62 0.23 -3.67 16 7 C -0.27 -7.13 6.24 -19.04 -0.12 -7.25 16 8 C 0.60 19.07 7.89 86.61 0.68 19.75 16 9 O -0.59 -22.51 15.18 -4.11 -0.06 -22.57 16 10 N -0.62 -16.96 2.95 -771.43 -2.28 -19.24 16 11 C 0.07 1.36 4.01 87.13 0.35 1.71 16 12 C 0.06 1.14 5.21 46.84 0.24 1.38 16 13 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.11 -2.20 6.81 33.55 0.23 -1.97 16 15 C 0.11 2.90 5.24 47.02 0.25 3.15 16 16 H 0.12 3.35 8.08 -2.39 -0.02 3.33 16 17 C 0.05 1.60 5.43 87.08 0.47 2.07 16 18 N -0.51 -16.16 4.84 -844.13 -4.09 -20.25 16 19 C 0.05 1.88 4.13 85.56 0.35 2.23 16 20 C 0.44 21.77 7.63 87.66 0.67 22.44 16 21 O -0.62 -35.50 15.47 -3.04 -0.05 -35.55 16 22 N -0.58 -30.49 5.29 -306.97 -1.62 -32.11 16 23 C -0.33 -19.46 9.68 84.04 0.81 -18.64 16 24 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 26 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 27 Si 0.99 43.92 29.55 68.60 2.03 45.95 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 30 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.89 6.47 -2.39 -0.02 1.88 16 34 H 0.21 1.28 8.06 -2.92 -0.02 1.26 16 35 H 0.16 2.71 4.88 -2.91 -0.01 2.69 16 36 H 0.07 1.70 4.59 -2.39 -0.01 1.69 16 37 H 0.10 1.60 6.93 -2.39 -0.02 1.58 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.02 0.92 7.42 -2.39 -0.02 0.90 16 42 H 0.12 3.47 8.03 -2.39 -0.02 3.45 16 43 H 0.06 2.03 6.11 -2.39 -0.01 2.02 16 44 H 0.40 19.80 7.90 -92.72 -0.73 19.07 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -82.40 361.56 -0.74 -83.14 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.50 Total: 36.09 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.63 Total: 23.28 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -8.78 Total: -130.34 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.11 Total: -58.12 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -82.40 -0.74 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692360111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.599 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds