Wall clock time and date at job start Tue Mar 31 2020 16:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29998 * 127.40237 * 2 1 4 4 O 1.20859 * 113.52799 * 179.97438 * 3 2 1 5 5 C 1.34439 * 113.07630 * 0.02562 * 4 3 2 6 6 N 1.32338 * 134.99039 * 180.02562 * 5 4 3 7 7 C 1.31466 * 121.78124 * 179.80086 * 6 5 4 8 8 C 1.40017 * 121.51960 * 0.43484 * 7 6 5 9 9 C 1.47713 * 120.49889 * 179.79698 * 8 7 6 10 10 O 1.21577 * 119.99882 * 179.72207 * 9 8 7 11 11 N 1.34770 * 120.00275 * 359.72244 * 9 8 7 12 12 C 1.46500 * 120.00423 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47361 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.47294 * 64.99703 * 13 12 11 15 15 N 1.46505 * 109.47024 * 304.99744 * 13 12 11 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.53006 * 109.47104 * 185.00342 * 13 12 11 25 25 C 1.53000 * 109.47536 * 64.99279 * 24 13 12 26 26 C 1.52996 * 109.47080 * 185.00361 * 24 13 12 27 27 C 1.39902 * 119.00056 * 359.52443 * 8 7 6 28 28 C 1.38670 * 117.70685 * 0.24686 * 27 8 7 29 29 H 1.09000 * 109.46811 * 269.99667 * 1 2 3 30 30 H 1.08989 * 109.46835 * 29.99590 * 1 2 3 31 31 H 1.08998 * 109.46778 * 149.99663 * 1 2 3 32 32 H 1.08001 * 119.24082 * 180.23335 * 7 6 5 33 33 H 0.96998 * 119.99979 * 359.97438 * 11 9 8 34 34 H 1.09005 * 109.46957 * 59.99705 * 12 11 9 35 35 H 1.09002 * 109.46680 * 300.00186 * 12 11 9 36 36 H 0.97000 * 119.99792 * 334.99921 * 15 13 12 37 37 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.46373 * 304.99589 * 24 13 12 39 39 H 1.09001 * 109.46343 * 60.00562 * 25 24 13 40 40 H 1.09001 * 109.46730 * 179.97438 * 25 24 13 41 41 H 1.08996 * 109.46957 * 300.00571 * 25 24 13 42 42 H 1.08999 * 109.47396 * 179.97438 * 26 24 13 43 43 H 1.09005 * 109.46888 * 299.98914 * 26 24 13 44 44 H 1.08998 * 109.47562 * 59.98997 * 26 24 13 45 45 H 1.07992 * 121.15040 * 180.23251 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2967 1.0327 0.0000 4 8 3.4700 0.7429 0.0005 5 6 3.6850 -0.5842 0.0004 6 7 4.7585 -1.3581 0.0012 7 6 4.6666 -2.6696 0.0047 8 6 3.4248 -3.3164 -0.0013 9 6 3.3479 -4.7915 -0.0017 10 8 2.2648 -5.3437 -0.0018 11 7 4.4783 -5.5253 -0.0020 12 6 4.4021 -6.9883 -0.0029 13 6 5.8160 -7.5727 -0.0024 14 1 6.3171 -7.3107 0.9294 15 7 6.5707 -7.0264 -1.1331 16 6 7.9377 -6.9691 -1.0800 17 1 8.4597 -7.3269 -0.2048 18 6 8.6531 -6.4567 -2.1537 19 7 8.0170 -6.0211 -3.2204 20 14 10.5185 -6.3856 -2.0844 21 1 11.0602 -7.7578 -1.9144 22 1 11.0386 -5.8003 -3.3461 23 1 10.9394 -5.5416 -0.9374 24 6 5.7385 -9.0955 -0.1292 25 6 5.1484 -9.4646 -1.4918 26 6 7.1426 -9.6899 -0.0035 27 6 2.2580 -2.5445 -0.0011 28 6 2.3976 -1.1648 -0.0002 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3632 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 5.5698 -3.2617 0.0090 33 1 5.3425 -5.0847 -0.0023 34 1 3.8701 -7.3238 -0.8933 35 1 3.8698 -7.3249 0.8867 36 1 6.1019 -6.7054 -1.9192 37 1 8.5169 -5.6628 -3.9705 38 1 5.1031 -9.4940 0.6618 39 1 5.7838 -9.0660 -2.2827 40 1 5.0936 -10.5494 -1.5821 41 1 4.1480 -9.0411 -1.5812 42 1 7.0874 -10.7748 -0.0934 43 1 7.7780 -9.2914 -0.7945 44 1 7.5630 -9.4270 0.9672 45 1 1.2822 -3.0071 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698973126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:10 Heat of formation + Delta-G solvation = 42.438305 kcal Electronic energy + Delta-G solvation = -28247.354769 eV Core-core repulsion = 24267.771438 eV Total energy + Delta-G solvation = -3979.583330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.89532 -41.53189 -40.01948 -38.72276 -36.06692 -35.38772 -34.69227 -33.53468 -32.58329 -31.84323 -29.93002 -29.38233 -27.76834 -26.72142 -25.51675 -25.28376 -23.61223 -22.42045 -21.92847 -20.42880 -19.59593 -19.27867 -19.02400 -18.99293 -18.05892 -17.20593 -16.77077 -16.63093 -16.19810 -15.81822 -15.39037 -15.12670 -14.99269 -14.78907 -14.60553 -14.44701 -14.43425 -14.28665 -14.22551 -13.76558 -13.72839 -13.36000 -12.83290 -12.75728 -12.65680 -12.63921 -12.40205 -12.12268 -12.05551 -11.92370 -11.87450 -11.44275 -11.26915 -11.12039 -10.81061 -10.71711 -10.59526 -10.40336 -9.98103 -8.88257 -7.81874 -5.06756 -0.74521 -0.66336 0.90066 1.02681 1.53709 1.55404 1.57477 1.59493 2.04683 2.45180 2.64466 2.68272 2.87310 3.16009 3.43252 3.51183 3.52670 3.65018 3.84595 3.97181 4.00830 4.29917 4.33785 4.41501 4.46319 4.51054 4.64077 4.67829 4.74230 4.75545 4.83298 4.93057 5.00564 5.04195 5.14585 5.16357 5.27858 5.32978 5.39587 5.52802 5.65353 5.69484 5.86718 6.19826 6.38499 6.48369 6.94810 7.08891 7.48042 8.20490 8.44839 9.40286 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.003126 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.262597 B = 8954.570421 C =10654.469901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.090 3.910 3 N -0.340 5.340 4 O 0.060 5.940 5 C 0.215 3.785 6 N -0.485 5.485 7 C 0.204 3.796 8 C -0.205 4.205 9 C 0.571 3.429 10 O -0.567 6.567 11 N -0.701 5.701 12 C 0.119 3.881 13 C 0.167 3.833 14 H 0.061 0.939 15 N -0.721 5.721 16 C -0.210 4.210 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.964 5.964 20 Si 0.949 3.051 21 H -0.286 1.286 22 H -0.308 1.308 23 H -0.280 1.280 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.139 4.139 27 C 0.078 3.922 28 C -0.235 4.235 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.192 0.808 33 H 0.411 0.589 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.374 0.626 37 H 0.244 0.756 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 4.648 9.507 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 N -0.052 5.052 4 O 0.009 5.991 5 C 0.033 3.967 6 N -0.202 5.202 7 C 0.039 3.961 8 C -0.211 4.211 9 C 0.357 3.643 10 O -0.448 6.448 11 N -0.352 5.352 12 C -0.005 4.005 13 C 0.058 3.942 14 H 0.079 0.921 15 N -0.361 5.361 16 C -0.342 4.342 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.615 5.615 20 Si 0.781 3.219 21 H -0.212 1.212 22 H -0.235 1.235 23 H -0.207 1.207 24 C -0.126 4.126 25 C -0.192 4.192 26 C -0.196 4.196 27 C 0.050 3.950 28 C -0.240 4.240 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.209 0.791 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.207 0.793 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.988 6.027 9.582 18.783 hybrid contribution 1.202 -0.643 -0.831 1.596 sum -13.786 5.384 8.752 17.194 Atomic orbital electron populations 1.20576 0.81017 1.06159 1.05859 1.25027 1.00009 0.85280 0.97650 1.73513 0.88529 1.23935 1.19251 1.84878 1.20956 1.19531 1.73778 1.22054 0.91371 0.86642 0.96622 1.66441 1.30628 1.05608 1.17531 1.23407 0.98079 0.87335 0.87252 1.20896 0.95085 0.94594 1.10507 1.17765 0.84251 0.85839 0.76449 1.90754 1.28613 1.73149 1.52305 1.45890 1.08779 1.07924 1.72597 1.21738 0.97922 0.78382 1.02424 1.20731 0.89648 0.92181 0.91634 0.92132 1.42504 1.02804 1.73556 1.17249 1.19403 0.83907 1.31016 0.99856 0.90311 1.25224 1.00235 1.03496 0.97003 1.69768 1.34894 1.49789 1.07056 0.85567 0.83029 0.77362 0.75907 1.21247 1.23550 1.20662 1.21582 0.96821 0.96606 0.97549 1.21697 0.99809 1.00216 0.97502 1.21773 0.97188 0.99266 1.01410 1.21129 1.00340 0.88878 0.84645 1.21057 0.94288 0.96148 1.12529 0.87192 0.88504 0.87355 0.79118 0.75162 0.91958 0.89602 0.79342 0.94680 0.90104 0.94593 0.92883 0.92877 0.93207 0.93218 0.93277 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.50 71.24 0.75 0.02 16 2 C 0.09 1.75 7.59 45.02 0.34 2.09 16 3 N -0.34 -8.35 11.94 -43.54 -0.52 -8.87 16 4 O 0.06 1.68 11.11 67.87 0.75 2.44 16 5 C 0.21 6.02 8.75 85.35 0.75 6.77 16 6 N -0.48 -14.25 10.36 -307.30 -3.18 -17.44 16 7 C 0.20 5.31 10.68 85.18 0.91 6.22 16 8 C -0.21 -5.10 5.90 -19.94 -0.12 -5.22 16 9 C 0.57 16.00 7.78 86.75 0.67 16.67 16 10 O -0.57 -18.29 16.42 -3.96 -0.07 -18.35 16 11 N -0.70 -19.52 5.34 -466.10 -2.49 -22.01 16 12 C 0.12 3.34 5.10 86.38 0.44 3.78 16 13 C 0.17 5.22 2.29 44.99 0.10 5.32 16 14 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 15 N -0.72 -29.37 3.53 -322.93 -1.14 -30.51 16 16 C -0.21 -9.82 7.75 84.04 0.65 -9.17 16 17 H 0.08 3.56 7.32 -2.91 -0.02 3.54 16 18 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 19 N -0.96 -54.23 13.06 21.65 0.28 -53.94 16 20 Si 0.95 43.36 29.55 68.60 2.03 45.38 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 C -0.10 -3.01 2.74 -10.79 -0.03 -3.04 16 25 C -0.13 -4.12 8.74 71.98 0.63 -3.49 16 26 C -0.14 -4.34 8.46 71.98 0.61 -3.73 16 27 C 0.08 1.68 9.75 22.78 0.22 1.90 16 28 C -0.23 -5.36 6.55 -20.25 -0.13 -5.50 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.19 4.52 6.39 -2.91 -0.02 4.50 16 33 H 0.41 11.48 6.18 -92.71 -0.57 10.90 16 34 H 0.06 1.90 6.35 -2.38 -0.02 1.89 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.37 17.19 7.80 -92.71 -0.72 16.46 16 37 H 0.24 13.86 8.31 -92.70 -0.77 13.09 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.03 1.35 7.47 -2.39 -0.02 1.34 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.50 6.46 -2.39 -0.02 1.49 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.92 5.99 -2.38 -0.01 1.91 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.18 3.04 7.74 -2.91 -0.02 3.02 16 Total: -1.00 -63.04 373.94 1.68 -61.36 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.25 Total: 32.30 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.26 Total: 9.64 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -7.05 Total: -132.77 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.69 Total: -15.91 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.04 1.68 -61.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698973126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.794 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds