Wall clock time and date at job start Tue Mar 31 2020 17:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38635 * 120.46905 * 2 1 4 4 C 1.38587 * 118.48568 * 180.02562 * 3 2 1 5 5 C 1.38599 * 119.35383 * 0.02562 * 4 3 2 6 6 N 1.31499 * 120.90084 * 0.02562 * 5 4 3 7 7 C 1.32747 * 121.64150 * 359.97438 * 6 5 4 8 8 C 1.48166 * 119.72031 * 180.02562 * 7 6 5 9 9 O 1.21520 * 119.99867 * 185.78570 * 8 7 6 10 10 N 1.34780 * 119.99891 * 5.78120 * 8 7 6 11 11 C 1.46505 * 119.99690 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47231 * 180.02562 * 11 10 8 13 13 H 1.09003 * 112.74224 * 284.23229 * 12 11 10 14 14 C 1.53509 * 113.48129 * 153.37938 * 12 11 10 15 15 C 1.53510 * 83.57455 * 219.20587 * 14 12 11 16 16 N 1.47480 * 87.93366 * 26.02612 * 15 14 12 17 17 C 1.46903 * 110.99369 * 221.29894 * 16 15 14 18 18 C 1.50702 * 109.46852 * 285.96203 * 17 16 15 19 19 O 1.21290 * 119.99935 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99782 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99753 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00190 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99759 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00235 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99866 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47318 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.46990 * 120.00179 * 25 23 21 28 28 H 1.48505 * 109.46729 * 240.00062 * 25 23 21 29 29 H 1.08993 * 109.47242 * 96.71673 * 1 2 3 30 30 H 1.09000 * 109.47067 * 216.71773 * 1 2 3 31 31 H 1.09001 * 109.46999 * 336.71524 * 1 2 3 32 32 H 1.07994 * 120.75556 * 0.04286 * 3 2 1 33 33 H 1.08001 * 120.32364 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.54963 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00467 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.47020 * 300.00022 * 11 10 8 37 37 H 1.09000 * 109.47039 * 59.99752 * 11 10 8 38 38 H 1.09006 * 114.16796 * 332.85641 * 14 12 11 39 39 H 1.09005 * 114.17181 * 105.55759 * 14 12 11 40 40 H 1.08999 * 113.48009 * 271.25175 * 15 14 12 41 41 H 1.09000 * 113.52979 * 140.79877 * 15 14 12 42 42 H 1.08993 * 109.47816 * 45.97176 * 17 16 15 43 43 H 1.09009 * 109.46745 * 165.97420 * 17 16 15 44 44 H 0.97004 * 120.00275 * 0.02562 * 20 18 17 45 45 H 0.97000 * 119.99806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2322 -0.0839 -0.0016 6 7 3.5406 -1.2024 -0.0026 7 6 2.2132 -1.2003 -0.0021 8 6 1.4767 -2.4860 -0.0027 9 8 0.2661 -2.4926 -0.1084 10 7 2.1494 -3.6480 0.1138 11 6 1.4211 -4.9193 0.1127 12 6 2.4128 -6.0753 0.2576 13 1 2.9585 -6.2804 -0.6635 14 6 1.8017 -7.3284 0.9000 15 6 3.1610 -7.4180 1.6078 16 7 3.2833 -5.9576 1.4423 17 6 4.6506 -5.5844 1.0559 18 6 5.5623 -5.7122 2.2490 19 8 5.1169 -6.0786 3.3161 20 7 6.8725 -5.4193 2.1304 21 6 7.7020 -5.5361 3.2157 22 1 7.3055 -5.8624 4.1658 23 6 9.0529 -5.2347 3.0932 24 7 9.5353 -4.8372 1.9372 25 14 10.1833 -5.3945 4.5717 26 1 9.4002 -5.8561 5.7460 27 1 11.2539 -6.3789 4.2722 28 1 10.7942 -4.0748 4.8726 29 1 -0.3633 -0.1202 -1.0205 30 1 -0.3633 -0.8238 0.6144 31 1 -0.3633 0.9440 0.4062 32 1 1.6901 2.1415 0.0007 33 1 4.1722 2.0598 -0.0001 34 1 5.3114 -0.1250 -0.0016 35 1 3.1156 -3.6428 0.1985 36 1 0.7191 -4.9366 0.9464 37 1 0.8747 -5.0241 -0.8246 38 1 0.9638 -7.1247 1.5668 39 1 1.6092 -8.1407 0.1990 40 1 3.9061 -7.9825 1.0473 41 1 3.0895 -7.7324 2.6490 42 1 4.9969 -6.2453 0.2614 43 1 4.6593 -4.5538 0.7009 44 1 7.2286 -5.1259 1.2771 45 1 10.4783 -4.6265 1.8518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699615747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:24 Heat of formation + Delta-G solvation = -18.707132 kcal Electronic energy + Delta-G solvation = -28250.316154 eV Core-core repulsion = 24268.081359 eV Total energy + Delta-G solvation = -3982.234796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90098 -41.41182 -39.91006 -39.48032 -36.02535 -35.82269 -34.35161 -33.34447 -33.08604 -32.04671 -29.71099 -28.14198 -27.55565 -25.66248 -25.37388 -24.04601 -23.04499 -21.85673 -21.10680 -20.73639 -19.92347 -19.15556 -17.93650 -17.68965 -17.25820 -16.72453 -16.69963 -16.61282 -16.34700 -16.21520 -15.78839 -15.62088 -15.22061 -15.14437 -14.75886 -14.47041 -14.13395 -14.04692 -13.83443 -13.67779 -13.55199 -13.29337 -13.10561 -12.94198 -12.91084 -12.74239 -12.44365 -12.35736 -12.13739 -11.93594 -11.62012 -11.49143 -11.09786 -10.78808 -10.44503 -10.34858 -10.23493 -10.01977 -9.86424 -9.77076 -8.47315 -5.95924 -0.34991 0.22903 1.35175 1.40647 1.54651 1.69722 2.01514 2.06887 2.27948 2.80736 2.83553 3.13780 3.18450 3.29790 3.55392 3.74461 3.77862 3.85020 3.94425 4.03405 4.05911 4.17798 4.24720 4.33611 4.40621 4.46776 4.51623 4.56281 4.64625 4.77273 4.80061 4.84450 4.87224 4.99854 5.08745 5.14528 5.20354 5.27481 5.35299 5.40639 5.50793 5.68614 5.91214 6.08486 6.36170 6.59194 6.78856 7.10962 7.12049 7.54420 8.10559 8.70240 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003484 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.916948 B = 8035.139051 C =10468.767020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.131 4.131 5 C 0.075 3.925 6 N -0.481 5.481 7 C 0.038 3.962 8 C 0.563 3.437 9 O -0.554 6.554 10 N -0.703 5.703 11 C 0.140 3.860 12 C 0.013 3.987 13 H 0.104 0.896 14 C -0.111 4.111 15 C 0.003 3.997 16 N -0.467 5.467 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.571 5.571 21 C -0.333 4.333 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.408 0.592 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 9.171 -10.867 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.150 4.150 5 C -0.085 4.085 6 N -0.193 5.193 7 C -0.099 4.099 8 C 0.349 3.651 9 O -0.434 6.434 10 N -0.354 5.354 11 C 0.016 3.984 12 C -0.096 4.096 13 H 0.122 0.878 14 C -0.148 4.148 15 C -0.126 4.126 16 N -0.190 5.190 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.195 1.195 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.194 0.806 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.802 8.571 -9.741 19.684 hybrid contribution 1.640 0.301 -0.135 1.673 sum -13.162 8.872 -9.876 18.694 Atomic orbital electron populations 1.20973 0.88479 1.03728 1.03489 1.21205 0.98994 0.92704 0.96019 1.21986 0.94435 0.98445 0.96161 1.22799 0.95491 1.00340 0.96394 1.23296 1.01565 0.87680 0.95991 1.67477 1.07229 1.33888 1.10686 1.21020 0.90374 0.93887 1.04644 1.18170 0.86497 0.83851 0.76597 1.90688 1.13655 1.87236 1.51785 1.45921 1.11907 1.05624 1.71900 1.21472 0.93906 0.80432 1.02545 1.23867 0.95414 0.95692 0.94671 0.87795 1.23135 0.96089 0.96401 0.99225 1.23628 0.98159 0.89169 1.01621 1.68868 1.06105 1.17013 1.27022 1.22400 0.90616 1.03110 0.94781 1.20631 0.82953 0.82788 0.90695 1.90496 1.75999 1.52831 1.31080 1.41913 1.06805 1.59588 1.12575 1.19660 0.90276 1.44562 0.91734 0.90614 1.25997 0.98168 0.96092 1.00755 1.69677 1.15807 1.45384 1.25008 0.84905 0.77681 0.78400 0.77550 1.20040 1.19448 1.19508 0.90482 0.90736 0.89545 0.80588 0.80405 0.80514 0.75503 0.91684 0.89301 0.88427 0.87020 0.91099 0.91884 0.90041 0.88494 0.77039 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 8.74 71.24 0.62 -1.59 16 2 C -0.09 -1.94 5.93 -19.52 -0.12 -2.06 16 3 C -0.08 -1.34 9.83 22.45 0.22 -1.12 16 4 C -0.13 -1.99 10.11 22.44 0.23 -1.76 16 5 C 0.07 1.62 11.18 84.83 0.95 2.57 16 6 N -0.48 -13.58 9.56 -184.91 -1.77 -15.35 16 7 C 0.04 1.06 6.75 41.89 0.28 1.35 16 8 C 0.56 17.18 7.75 86.88 0.67 17.85 16 9 O -0.55 -17.95 13.31 -3.78 -0.05 -18.00 16 10 N -0.70 -20.09 5.45 -465.64 -2.54 -22.63 16 11 C 0.14 3.39 5.81 86.38 0.50 3.89 16 12 C 0.01 0.30 3.25 42.18 0.14 0.44 16 13 H 0.10 2.00 7.77 -2.39 -0.02 1.98 16 14 C -0.11 -2.23 8.00 30.94 0.25 -1.98 16 15 C 0.00 0.09 6.71 83.57 0.56 0.65 16 16 N -0.47 -15.22 5.63 -906.77 -5.11 -20.32 16 17 C 0.02 0.80 5.07 85.56 0.43 1.24 16 18 C 0.44 21.57 7.62 87.66 0.67 22.23 16 19 O -0.62 -35.18 15.34 -3.06 -0.05 -35.23 16 20 N -0.57 -29.73 5.29 -306.98 -1.62 -31.36 16 21 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 24 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.90 5.85 -2.39 -0.01 1.89 16 31 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 33 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.41 12.19 5.57 -92.71 -0.52 11.67 16 36 H 0.06 1.72 7.87 -2.38 -0.02 1.70 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.96 7.94 -2.38 -0.02 1.94 16 39 H 0.11 1.54 8.14 -2.38 -0.02 1.53 16 40 H 0.07 2.00 7.70 -2.39 -0.02 1.98 16 41 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 42 H 0.08 2.46 7.56 -2.39 -0.02 2.45 16 43 H 0.10 3.24 6.33 -2.38 -0.02 3.22 16 44 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -76.16 375.17 -2.34 -78.50 By element: Atomic # 1 Polarization: 45.19 SS G_CDS: -0.21 Total: 44.99 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 6.69 Total: 23.31 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -10.75 Total: -138.72 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.10 Total: -53.23 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.16 -2.34 -78.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699615747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.789 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds