Wall clock time and date at job start Tue Mar 31 2020 16:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48507 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47234 * 299.99971 * 3 2 1 6 6 H 1.48496 * 109.47199 * 60.00433 * 3 2 1 7 7 C 1.38814 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00036 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.38225 * 120.41487 * 95.00448 * 11 10 9 13 13 C 1.39376 * 118.35741 * 180.02562 * 12 11 10 14 14 O 1.35518 * 120.51960 * 180.02562 * 13 12 11 15 15 N 1.32825 * 118.97210 * 359.97438 * 13 12 11 16 16 C 1.31769 * 120.72243 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.09494 * 180.02562 * 16 15 13 18 18 N 1.46502 * 109.47076 * 89.99960 * 17 16 15 19 19 C 1.34778 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.50696 * 119.99739 * 179.97438 * 19 18 17 22 22 C 1.53007 * 109.47169 * 179.97438 * 21 19 18 23 23 H 1.08997 * 110.33971 * 52.71211 * 22 21 19 24 24 C 1.51098 * 110.38790 * 290.30488 * 22 21 19 25 25 C 1.30798 * 111.15292 * 224.77792 * 24 22 21 26 26 C 1.51106 * 110.94366 * 359.95455 * 25 24 22 27 27 C 1.54630 * 110.38584 * 174.99948 * 22 21 19 28 28 N 1.31786 * 121.80721 * 0.27114 * 16 15 13 29 29 H 0.97000 * 120.00170 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00239 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46781 * 60.00354 * 10 9 7 32 32 H 1.08995 * 109.47135 * 300.00430 * 10 9 7 33 33 H 1.08009 * 120.82317 * 0.03856 * 12 11 10 34 34 H 0.96702 * 113.99426 * 269.98441 * 14 13 12 35 35 H 1.08996 * 109.47003 * 329.99650 * 17 16 15 36 36 H 1.08998 * 109.46594 * 209.99748 * 17 16 15 37 37 H 0.96995 * 120.00244 * 359.97438 * 18 17 16 38 38 H 1.09004 * 109.47010 * 59.99623 * 21 19 18 39 39 H 1.08998 * 109.47365 * 299.99925 * 21 19 18 40 40 H 1.08007 * 124.44960 * 44.76365 * 24 22 21 41 41 H 1.08002 * 124.60922 * 179.97438 * 25 24 22 42 42 H 1.09002 * 110.38747 * 257.61980 * 26 25 24 43 43 H 1.09000 * 110.38500 * 135.35448 * 26 25 24 44 44 H 1.09004 * 111.04043 * 25.42005 * 27 22 21 45 45 H 1.09001 * 111.07445 * 261.49288 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0790 -4.8022 -0.0012 12 6 0.7038 -5.4014 -1.1889 13 6 -0.2051 -6.4569 -1.1397 14 8 -0.6027 -7.0763 -2.2776 15 7 -0.6748 -6.8470 0.0399 16 6 -0.2907 -6.2481 1.1489 17 6 -0.8464 -6.7210 2.4674 18 7 0.0197 -7.7680 3.0150 19 6 -0.2828 -8.3436 4.1956 20 8 -1.2717 -7.9943 4.8048 21 6 0.6078 -9.4210 4.7586 22 6 0.0436 -9.9011 6.0974 23 1 -1.0033 -10.1839 5.9878 24 6 0.1936 -8.8255 7.1479 25 6 0.6388 -9.3231 8.2727 26 6 0.8572 -10.8136 8.1550 27 6 0.8701 -11.0927 6.6340 28 7 0.5625 -5.2437 1.1363 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6849 -3.7144 -0.8904 33 1 1.1051 -5.0602 -2.1319 34 1 -1.3869 -6.6840 -2.6854 35 1 -1.8491 -7.1208 2.3166 36 1 -0.8899 -5.8841 3.1644 37 1 0.8103 -8.0476 2.5276 38 1 1.6106 -9.0214 4.9096 39 1 0.6513 -10.2576 4.0613 40 1 -0.0364 -7.7819 6.9911 41 1 0.8255 -8.7470 9.1670 42 1 0.0417 -11.3559 8.6336 43 1 1.8117 -11.0938 8.6005 44 1 1.8867 -11.0723 6.2412 45 1 0.3839 -12.0413 6.4062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707179127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:47 Heat of formation + Delta-G solvation = 0.497422 kcal Electronic energy + Delta-G solvation = -26937.163884 eV Core-core repulsion = 22955.761860 eV Total energy + Delta-G solvation = -3981.402024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28109 -40.12565 -38.46706 -37.78332 -35.69161 -34.64011 -33.15501 -32.17124 -31.57164 -30.62268 -29.15748 -27.85358 -26.59698 -25.33988 -23.52401 -22.84567 -21.56396 -20.95416 -20.55060 -18.99599 -18.81569 -17.84619 -17.30713 -17.26187 -16.55934 -16.14586 -15.77349 -15.51612 -15.32307 -15.00070 -14.91571 -14.23596 -14.00499 -13.82035 -13.50739 -13.33742 -12.98272 -12.68594 -12.63637 -12.27737 -12.13127 -12.09243 -12.08395 -11.92766 -11.52108 -11.39059 -11.08661 -11.02571 -10.90211 -10.67246 -10.41907 -10.14259 -10.05285 -9.84263 -9.43094 -9.24607 -9.22676 -9.07605 -9.02099 -7.09110 -5.86812 -3.18471 0.73499 0.97088 2.11329 2.53061 2.94506 3.16235 3.38375 3.43840 3.46394 3.76108 3.85674 4.28912 4.32105 4.35700 4.54056 4.58210 4.70300 4.87509 4.95355 5.07536 5.12205 5.18955 5.27236 5.28290 5.35175 5.37296 5.45953 5.53630 5.57791 5.60623 5.67574 5.72705 5.91482 5.92814 6.01144 6.15880 6.17324 6.32171 6.40484 6.42440 6.71994 6.98771 7.25408 7.30041 7.59816 8.06855 8.07278 8.28730 9.41177 9.91660 10.27123 11.35551 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002316 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.346862 B =12087.944886 C =13896.330820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.196 3.804 11 C 0.200 3.800 12 C -0.218 4.218 13 C 0.353 3.647 14 O -0.478 6.478 15 N -0.533 5.533 16 C 0.316 3.684 17 C 0.195 3.805 18 N -0.722 5.722 19 C 0.516 3.484 20 O -0.535 6.535 21 C -0.132 4.132 22 C -0.054 4.054 23 H 0.091 0.909 24 C -0.142 4.142 25 C -0.183 4.183 26 C -0.099 4.099 27 C -0.123 4.123 28 N -0.492 5.492 29 H 0.257 0.743 30 H 0.385 0.615 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.156 0.844 34 H 0.408 0.592 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.401 0.599 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 -23.190 6.509 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.069 3.931 11 C 0.055 3.945 12 C -0.242 4.242 13 C 0.166 3.834 14 O -0.285 6.285 15 N -0.259 5.259 16 C 0.047 3.953 17 C 0.070 3.930 18 N -0.375 5.375 19 C 0.303 3.697 20 O -0.411 6.411 21 C -0.172 4.172 22 C -0.072 4.072 23 H 0.109 0.891 24 C -0.159 4.159 25 C -0.201 4.201 26 C -0.136 4.136 27 C -0.160 4.160 28 N -0.208 5.208 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.174 0.826 34 H 0.267 0.733 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.816 -23.473 7.813 24.752 hybrid contribution 0.308 1.477 -1.421 2.073 sum 1.124 -21.995 6.391 22.932 Atomic orbital electron populations 1.69679 1.05226 1.25848 1.57018 1.24791 0.95574 0.97873 1.02415 0.86055 0.78774 0.83676 0.77252 1.20382 1.21768 1.21697 1.19244 0.91163 0.83464 1.43663 0.90669 1.42180 1.05848 0.98897 1.89822 1.19718 0.90801 0.82384 1.00238 1.22206 0.92148 0.93518 0.86622 1.22974 1.02210 0.96888 1.02087 1.19367 0.91084 0.87367 0.85553 1.84691 1.50666 1.58499 1.34650 1.67680 1.27998 1.31379 0.98848 1.22736 0.90864 0.88795 0.92919 1.19866 0.93647 0.91585 0.87873 1.45872 1.29262 1.39751 1.22632 1.20674 0.86187 0.82780 0.80065 1.90725 1.27939 1.63430 1.59020 1.21724 0.99876 0.97654 0.97919 1.20823 1.00499 0.93690 0.92192 0.89076 1.23391 0.98338 0.99373 0.94836 1.23324 1.02065 0.96084 0.98598 1.21333 1.01676 0.94337 0.96286 1.22566 1.00341 0.97730 0.95375 1.68195 1.09546 1.12118 1.30936 0.93358 0.78095 0.93436 0.93789 0.82599 0.73291 0.88780 0.88243 0.76519 0.88541 0.88635 0.85618 0.85991 0.90930 0.91393 0.90864 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.82 5.59 -61.09 -0.34 -18.16 16 10 C 0.20 3.79 6.61 -5.19 -0.03 3.75 16 11 C 0.20 3.42 6.18 -82.31 -0.51 2.91 16 12 C -0.22 -3.18 9.79 -39.16 -0.38 -3.56 16 13 C 0.35 4.92 7.83 -16.70 -0.13 4.79 16 14 O -0.48 -5.37 13.58 -18.25 -0.25 -5.62 16 15 N -0.53 -7.87 10.36 -10.78 -0.11 -7.99 16 16 C 0.32 4.75 7.01 -157.22 -1.10 3.65 16 17 C 0.20 2.59 6.10 -5.19 -0.03 2.56 16 18 N -0.72 -8.02 5.55 -61.47 -0.34 -8.36 16 19 C 0.52 5.87 7.63 -10.99 -0.08 5.79 16 20 O -0.53 -7.95 14.92 5.55 0.08 -7.87 16 21 C -0.13 -1.04 5.09 -27.88 -0.14 -1.18 16 22 C -0.05 -0.47 2.52 -90.72 -0.23 -0.69 16 23 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 24 C -0.14 -1.42 9.27 -35.78 -0.33 -1.76 16 25 C -0.18 -1.60 10.80 -35.77 -0.39 -1.98 16 26 C -0.10 -0.70 6.80 -26.82 -0.18 -0.89 16 27 C -0.12 -0.81 6.71 -25.01 -0.17 -0.98 16 28 N -0.49 -8.42 10.27 -7.05 -0.07 -8.49 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.39 10.26 7.66 -40.82 -0.31 9.95 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.41 2.63 9.06 45.56 0.41 3.05 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 3.80 8.46 -40.82 -0.35 3.45 16 38 H 0.10 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.13 1.46 7.59 -52.48 -0.40 1.06 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.91 386.07 -9.13 -43.04 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.66 Total: 12.51 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -3.96 Total: 5.24 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -0.14 Total: -70.00 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.16 Total: -13.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.91 -9.13 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707179127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.533 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds