Wall clock time and date at job start Tue Mar 31 2020 16:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48507 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47234 * 299.99971 * 3 2 1 6 6 H 1.48496 * 109.47199 * 60.00433 * 3 2 1 7 7 C 1.38814 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00036 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.38225 * 120.41487 * 95.00448 * 11 10 9 13 13 C 1.39376 * 118.35741 * 180.02562 * 12 11 10 14 14 O 1.35518 * 120.51960 * 180.02562 * 13 12 11 15 15 N 1.32825 * 118.97210 * 359.97438 * 13 12 11 16 16 C 1.31769 * 120.72243 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.09494 * 180.02562 * 16 15 13 18 18 N 1.46502 * 109.47076 * 89.99960 * 17 16 15 19 19 C 1.34778 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.50696 * 119.99739 * 179.97438 * 19 18 17 22 22 C 1.53007 * 109.47169 * 179.97438 * 21 19 18 23 23 H 1.08997 * 110.33971 * 52.71211 * 22 21 19 24 24 C 1.51098 * 110.38790 * 290.30488 * 22 21 19 25 25 C 1.30798 * 111.15292 * 224.77792 * 24 22 21 26 26 C 1.51106 * 110.94366 * 359.95455 * 25 24 22 27 27 C 1.54630 * 110.38584 * 174.99948 * 22 21 19 28 28 N 1.31786 * 121.80721 * 0.27114 * 16 15 13 29 29 H 0.97000 * 120.00170 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00239 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46781 * 60.00354 * 10 9 7 32 32 H 1.08995 * 109.47135 * 300.00430 * 10 9 7 33 33 H 1.08009 * 120.82317 * 0.03856 * 12 11 10 34 34 H 0.96702 * 113.99426 * 269.98441 * 14 13 12 35 35 H 1.08996 * 109.47003 * 329.99650 * 17 16 15 36 36 H 1.08998 * 109.46594 * 209.99748 * 17 16 15 37 37 H 0.96995 * 120.00244 * 359.97438 * 18 17 16 38 38 H 1.09004 * 109.47010 * 59.99623 * 21 19 18 39 39 H 1.08998 * 109.47365 * 299.99925 * 21 19 18 40 40 H 1.08007 * 124.44960 * 44.76365 * 24 22 21 41 41 H 1.08002 * 124.60922 * 179.97438 * 25 24 22 42 42 H 1.09002 * 110.38747 * 257.61980 * 26 25 24 43 43 H 1.09000 * 110.38500 * 135.35448 * 26 25 24 44 44 H 1.09004 * 111.04043 * 25.42005 * 27 22 21 45 45 H 1.09001 * 111.07445 * 261.49288 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0790 -4.8022 -0.0012 12 6 0.7038 -5.4014 -1.1889 13 6 -0.2051 -6.4569 -1.1397 14 8 -0.6027 -7.0763 -2.2776 15 7 -0.6748 -6.8470 0.0399 16 6 -0.2907 -6.2481 1.1489 17 6 -0.8464 -6.7210 2.4674 18 7 0.0197 -7.7680 3.0150 19 6 -0.2828 -8.3436 4.1956 20 8 -1.2717 -7.9943 4.8048 21 6 0.6078 -9.4210 4.7586 22 6 0.0436 -9.9011 6.0974 23 1 -1.0033 -10.1839 5.9878 24 6 0.1936 -8.8255 7.1479 25 6 0.6388 -9.3231 8.2727 26 6 0.8572 -10.8136 8.1550 27 6 0.8701 -11.0927 6.6340 28 7 0.5625 -5.2437 1.1363 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6849 -3.7144 -0.8904 33 1 1.1051 -5.0602 -2.1319 34 1 -1.3869 -6.6840 -2.6854 35 1 -1.8491 -7.1208 2.3166 36 1 -0.8899 -5.8841 3.1644 37 1 0.8103 -8.0476 2.5276 38 1 1.6106 -9.0214 4.9096 39 1 0.6513 -10.2576 4.0613 40 1 -0.0364 -7.7819 6.9911 41 1 0.8255 -8.7470 9.1670 42 1 0.0417 -11.3559 8.6336 43 1 1.8117 -11.0938 8.6005 44 1 1.8867 -11.0723 6.2412 45 1 0.3839 -12.0413 6.4062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707179127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:46 Heat of formation + Delta-G solvation = -26.708012 kcal Electronic energy + Delta-G solvation = -26938.343600 eV Core-core repulsion = 22955.761860 eV Total energy + Delta-G solvation = -3982.581740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45761 -40.99746 -39.20876 -38.78608 -37.16725 -35.91243 -34.64763 -33.23382 -32.73204 -32.12005 -29.77380 -28.89897 -28.22997 -26.09881 -25.25921 -24.06953 -22.93892 -21.76759 -21.24478 -19.99321 -19.63814 -19.43259 -18.80590 -18.15800 -17.57414 -16.91842 -16.82954 -16.73039 -16.44823 -16.32314 -15.81174 -15.65877 -15.44561 -14.98750 -14.83251 -14.47290 -14.25124 -14.12703 -13.63711 -13.42828 -13.17127 -12.97322 -12.93336 -12.81113 -12.75154 -12.65903 -12.08768 -12.06457 -11.99419 -11.97951 -11.81418 -11.68223 -11.53338 -11.05103 -11.02726 -10.57467 -10.43661 -10.24152 -9.76280 -9.09970 -7.98499 -5.29926 -0.41933 -0.23107 1.39090 1.48799 1.49959 1.59963 1.63319 1.97200 2.08995 2.51401 2.62890 2.75216 3.11201 3.36961 3.60661 3.74692 3.76776 3.87717 3.98887 3.99435 4.08393 4.12778 4.21712 4.36599 4.44935 4.51746 4.58268 4.61443 4.69134 4.77465 4.78567 4.88119 4.99988 5.01504 5.09731 5.12354 5.21451 5.31009 5.45087 5.48100 5.70699 5.80317 5.99615 6.20481 6.42844 6.44682 6.87667 7.17919 7.28026 7.94940 8.19970 9.25093 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002316 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.346862 B =12087.944886 C =13896.330820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.736 5.736 10 C 0.198 3.802 11 C 0.184 3.816 12 C -0.211 4.211 13 C 0.364 3.636 14 O -0.473 6.473 15 N -0.536 5.536 16 C 0.318 3.682 17 C 0.201 3.799 18 N -0.715 5.715 19 C 0.513 3.487 20 O -0.575 6.575 21 C -0.123 4.123 22 C -0.054 4.054 23 H 0.073 0.927 24 C -0.170 4.170 25 C -0.176 4.176 26 C -0.101 4.101 27 C -0.115 4.115 28 N -0.517 5.517 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.175 0.825 34 H 0.430 0.570 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -25.226 5.795 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.104 0.896 9 N -0.379 5.379 10 C 0.072 3.928 11 C 0.039 3.961 12 C -0.235 4.235 13 C 0.176 3.824 14 O -0.284 6.284 15 N -0.263 5.263 16 C 0.049 3.951 17 C 0.075 3.925 18 N -0.368 5.368 19 C 0.302 3.698 20 O -0.454 6.454 21 C -0.163 4.163 22 C -0.072 4.072 23 H 0.091 0.909 24 C -0.188 4.188 25 C -0.194 4.194 26 C -0.138 4.138 27 C -0.152 4.152 28 N -0.234 5.234 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.294 0.706 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.519 -25.548 7.068 26.627 hybrid contribution -0.231 2.003 -1.207 2.350 sum 2.288 -23.545 5.861 24.371 Atomic orbital electron populations 1.69838 1.06839 1.26161 1.59263 1.25635 0.96389 1.01342 1.03352 0.85013 0.78440 0.79387 0.76511 1.18485 1.21937 1.22430 1.19691 0.91829 0.84467 1.41461 0.89572 1.42344 1.05417 1.00346 1.89785 1.19775 0.91149 0.81161 1.00764 1.21909 0.92792 0.93709 0.87677 1.23077 1.01895 0.96714 1.01841 1.19430 0.90307 0.86632 0.86015 1.84658 1.52027 1.58277 1.33483 1.67766 1.27942 1.31449 0.99098 1.22855 0.90360 0.88292 0.93552 1.19704 0.94110 0.91689 0.86990 1.45821 1.29243 1.39022 1.22709 1.21378 0.86001 0.82930 0.79478 1.90709 1.29922 1.64792 1.60003 1.21777 0.99366 0.97202 0.97916 1.20819 1.00069 0.94118 0.92237 0.90863 1.23366 1.00253 0.98754 0.96410 1.23603 1.00273 0.97429 0.98101 1.21403 1.02647 0.92752 0.96982 1.22575 1.00784 0.97167 0.94700 1.68119 1.10623 1.13120 1.31536 0.93980 0.79698 0.93864 0.91535 0.80725 0.70613 0.88664 0.89905 0.75337 0.87027 0.85730 0.88267 0.85542 0.90375 0.89899 0.89454 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.98 45.19 29.55 68.60 2.03 47.21 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.74 -36.41 5.59 -347.18 -1.94 -38.35 16 10 C 0.20 7.52 6.61 85.63 0.57 8.08 16 11 C 0.18 6.15 6.18 42.45 0.26 6.41 16 12 C -0.21 -5.81 9.79 22.54 0.22 -5.59 16 13 C 0.36 9.40 7.83 84.82 0.66 10.06 16 14 O -0.47 -9.29 13.58 -88.21 -1.20 -10.49 16 15 N -0.54 -15.15 10.36 -300.69 -3.12 -18.26 16 16 C 0.32 9.49 7.01 138.76 0.97 10.47 16 17 C 0.20 5.42 6.10 85.63 0.52 5.95 16 18 N -0.71 -15.66 5.55 -466.79 -2.59 -18.25 16 19 C 0.51 11.68 7.63 87.66 0.67 12.35 16 20 O -0.58 -17.85 14.92 -3.04 -0.05 -17.89 16 21 C -0.12 -1.77 5.09 29.85 0.15 -1.61 16 22 C -0.05 -0.89 2.52 -10.86 -0.03 -0.92 16 23 H 0.07 1.47 7.90 -2.39 -0.02 1.45 16 24 C -0.17 -3.50 9.27 25.98 0.24 -3.26 16 25 C -0.18 -2.98 10.80 25.98 0.28 -2.70 16 26 C -0.10 -1.23 6.80 30.53 0.21 -1.02 16 27 C -0.11 -1.24 6.71 31.71 0.21 -1.03 16 28 N -0.52 -17.73 10.27 -176.23 -1.81 -19.54 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 20.17 7.66 -92.71 -0.71 19.46 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 33 H 0.18 4.05 8.06 -2.91 -0.02 4.02 16 34 H 0.43 4.25 9.06 -74.06 -0.67 3.58 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.41 7.33 8.46 -92.71 -0.78 6.55 16 38 H 0.11 1.31 8.13 -2.38 -0.02 1.29 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 2.53 7.59 -2.91 -0.02 2.50 16 41 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.72 7.91 -2.39 -0.02 0.70 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -74.17 386.07 -3.26 -77.43 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.12 Total: 35.74 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.25 Total: 21.15 kcal Atomic # 7 Polarization: -143.98 SS G_CDS: -9.17 Total: -153.16 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.24 Total: -28.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.17 -3.26 -77.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707179127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds