Wall clock time and date at job start Tue Mar 31 2020 17:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38350 * 120.34823 * 2 1 4 4 N 1.31924 * 121.07780 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.88131 * 359.76147 * 4 3 2 6 6 C 1.39518 * 120.56432 * 0.50173 * 5 4 3 7 7 C 1.47837 * 120.55802 * 179.77365 * 6 5 4 8 8 O 1.21550 * 120.00187 * 179.71906 * 7 6 5 9 9 N 1.34774 * 120.00264 * 359.71419 * 7 6 5 10 10 C 1.46496 * 120.00365 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.62893 * 31.89381 * 10 9 7 12 12 C 1.55139 * 110.70877 * 268.60150 * 10 9 7 13 13 C 1.54904 * 101.65629 * 205.96217 * 12 10 9 14 14 N 1.47843 * 104.79405 * 37.06983 * 13 12 10 15 15 C 1.46900 * 110.99888 * 213.63369 * 14 13 12 16 16 C 1.50691 * 109.47193 * 290.84246 * 15 14 13 17 17 O 1.21291 * 120.00247 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99768 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99773 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00182 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99652 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47093 * 60.00172 * 23 21 19 25 25 H 1.48508 * 109.47221 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00165 * 23 21 19 27 27 C 1.47446 * 108.56761 * 335.90448 * 14 13 12 28 28 C 1.38357 * 120.34773 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46893 * 269.98150 * 1 2 3 30 30 H 1.08994 * 109.46869 * 29.97888 * 1 2 3 31 31 H 1.08998 * 109.46720 * 149.98309 * 1 2 3 32 32 H 1.08005 * 119.46368 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.71602 * 180.24712 * 5 4 3 34 34 H 0.97002 * 119.99730 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.98834 * 324.05760 * 12 10 9 36 36 H 1.09000 * 110.99151 * 87.83198 * 12 10 9 37 37 H 1.08998 * 110.37178 * 278.24131 * 13 12 10 38 38 H 1.09003 * 110.37142 * 155.89745 * 13 12 10 39 39 H 1.08998 * 109.47082 * 50.84605 * 15 14 13 40 40 H 1.09000 * 109.46598 * 170.84099 * 15 14 13 41 41 H 0.96996 * 119.99808 * 0.02562 * 18 16 15 42 42 H 0.97002 * 120.00786 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.88511 * 120.39826 * 27 14 13 44 44 H 1.08995 * 109.88851 * 241.42128 * 27 14 13 45 45 H 1.08001 * 120.85265 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2350 0.1014 0.0036 6 6 3.6054 -1.1437 -0.0018 7 6 4.4023 -2.3889 -0.0022 8 8 3.8434 -3.4682 -0.0017 9 7 5.7487 -2.3274 -0.0031 10 6 6.5384 -3.5613 -0.0041 11 1 6.0155 -4.3514 -0.5429 12 6 6.8650 -4.0047 1.4463 13 6 8.1676 -4.8171 1.2394 14 7 8.9027 -4.0892 0.1831 15 6 9.6615 -5.0176 -0.6654 16 6 10.7987 -5.6079 0.1279 17 8 10.9608 -5.2871 1.2863 18 7 11.6351 -6.4931 -0.4496 19 6 12.6694 -7.0305 0.2722 20 1 12.8142 -6.7443 1.3035 21 6 13.5319 -7.9427 -0.3233 22 7 13.3560 -8.2906 -1.5782 23 14 14.9416 -8.6744 0.6600 24 1 14.3995 -9.4063 1.8329 25 1 15.7084 -9.6135 -0.1976 26 1 15.8372 -7.5857 1.1267 27 6 7.9340 -3.3154 -0.6150 28 6 2.2061 -1.1940 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6630 2.1275 0.0004 33 1 5.3136 0.1559 0.0071 34 1 6.1948 -1.4660 -0.0031 35 1 7.0409 -3.1415 2.0882 36 1 6.0718 -4.6338 1.8502 37 1 7.9349 -5.8299 0.9106 38 1 8.7505 -4.8404 2.1601 39 1 9.0042 -5.8168 -1.0079 40 1 10.0594 -4.4804 -1.5263 41 1 11.5052 -6.7499 -1.3759 42 1 13.9584 -8.9271 -1.9941 43 1 8.1780 -2.2542 -0.5672 44 1 7.9528 -3.6538 -1.6509 45 1 1.6858 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713081431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:43 Heat of formation + Delta-G solvation = -27.044104 kcal Electronic energy + Delta-G solvation = -27058.020388 eV Core-core repulsion = 23075.424074 eV Total energy + Delta-G solvation = -3982.596314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11751 -39.84562 -38.77903 -37.48717 -34.81847 -34.09238 -33.79298 -32.67955 -31.32059 -30.74431 -28.63158 -27.79724 -26.63856 -24.86441 -24.07885 -23.22680 -21.38315 -21.06130 -20.68554 -19.20523 -18.21243 -17.86305 -17.45810 -16.98572 -16.36631 -15.76126 -15.58899 -15.35389 -14.96483 -14.58327 -14.47265 -14.40210 -13.96706 -13.80098 -13.65185 -13.54958 -13.24390 -13.11678 -13.00187 -12.91729 -12.48165 -12.34884 -11.94297 -11.78376 -11.54059 -11.47783 -11.12356 -10.97246 -10.75988 -10.58436 -10.42990 -10.27626 -10.19933 -9.86777 -9.53302 -9.47436 -9.29090 -8.46414 -7.97161 -7.90631 -6.39979 -3.80804 0.16656 0.69461 2.47297 2.71163 3.21265 3.26823 3.31203 3.37080 3.78096 3.92248 4.00828 4.17275 4.23720 4.30601 4.36478 4.43658 4.47875 4.62900 4.74272 4.90476 4.98149 5.05377 5.15358 5.15823 5.26282 5.33222 5.36890 5.42714 5.52833 5.57911 5.65646 5.71324 5.79054 5.84920 5.94228 6.05056 6.07302 6.26177 6.29787 6.44802 7.09887 7.17873 7.21482 7.35305 7.56457 7.82714 8.07584 8.63672 9.19835 9.56209 10.08241 10.77739 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.001731 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.914517 B =16170.748133 C =16282.069767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.145 4.145 3 C 0.120 3.880 4 N -0.483 5.483 5 C 0.128 3.872 6 C -0.181 4.181 7 C 0.564 3.436 8 O -0.533 6.533 9 N -0.711 5.711 10 C 0.123 3.877 11 H 0.099 0.901 12 C -0.140 4.140 13 C 0.054 3.946 14 N -0.501 5.501 15 C 0.039 3.961 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.037 3.963 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.117 16.575 -0.889 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.037 4.037 4 N -0.190 5.190 5 C -0.030 4.030 6 C -0.186 4.186 7 C 0.350 3.650 8 O -0.410 6.410 9 N -0.363 5.363 10 C 0.017 3.983 11 H 0.117 0.883 12 C -0.179 4.179 13 C -0.074 4.074 14 N -0.225 5.225 15 C -0.093 4.093 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.092 4.092 28 C -0.045 4.045 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.237 0.763 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.457 17.000 -0.016 28.969 hybrid contribution -0.010 -1.528 -0.636 1.655 sum -23.467 15.472 -0.652 28.116 Atomic orbital electron populations 1.20753 0.89480 1.03560 1.03028 1.20973 0.98141 0.93709 1.01860 1.22943 0.89908 0.97780 0.93076 1.67712 1.08084 1.30902 1.12310 1.22990 1.00348 0.86801 0.92882 1.21013 0.95203 0.94766 1.07600 1.18030 0.82171 0.88399 0.76374 1.90796 1.71063 1.29621 1.49502 1.45878 1.05655 1.09928 1.74801 1.22345 0.91656 0.86683 0.97610 0.88251 1.23156 0.97831 1.00944 0.95955 1.23017 0.92171 0.94934 0.97264 1.63293 1.22934 1.25128 1.11152 1.22149 0.96041 0.95138 0.95947 1.19697 0.85349 0.83585 0.88402 1.90508 1.74687 1.63376 1.17517 1.41851 1.26199 1.38134 1.14045 1.19647 1.04552 1.21228 0.97424 0.87981 1.25248 0.99265 0.97383 0.96028 1.69599 1.39125 1.34152 1.11528 0.85923 0.80516 0.78751 0.79044 1.19953 1.21007 1.19907 1.23091 0.88954 1.00362 0.96814 1.21659 0.92450 0.99109 0.91303 0.90524 0.90823 0.90916 0.82203 0.82317 0.76263 0.90296 0.90508 0.93609 0.88365 0.93150 0.89284 0.77528 0.91856 0.90076 0.91825 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.03 36.01 0.36 -0.04 16 2 C -0.14 -0.93 5.89 -104.53 -0.62 -1.54 16 3 C 0.12 0.81 10.85 -17.47 -0.19 0.62 16 4 N -0.48 -4.18 10.35 -12.91 -0.13 -4.31 16 5 C 0.13 1.02 10.71 -17.13 -0.18 0.84 16 6 C -0.18 -1.63 5.89 -104.82 -0.62 -2.24 16 7 C 0.56 6.15 7.78 -12.33 -0.10 6.05 16 8 O -0.53 -7.66 16.07 5.32 0.09 -7.58 16 9 N -0.71 -6.58 5.13 -52.99 -0.27 -6.85 16 10 C 0.12 1.38 3.31 -66.11 -0.22 1.16 16 11 H 0.10 1.24 7.55 -51.93 -0.39 0.85 16 12 C -0.14 -1.74 6.76 -24.60 -0.17 -1.90 16 13 C 0.05 0.84 5.74 -2.30 -0.01 0.83 16 14 N -0.50 -8.01 4.86 -232.70 -1.13 -9.15 16 15 C 0.04 0.68 5.05 -4.98 -0.03 0.65 16 16 C 0.44 10.42 7.58 -10.99 -0.08 10.34 16 17 O -0.58 -15.47 14.61 5.55 0.08 -15.38 16 18 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.04 0.43 6.62 -2.84 -0.02 0.41 16 28 C -0.02 -0.15 9.39 -38.87 -0.37 -0.52 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.16 0.87 6.42 -52.49 -0.34 0.53 16 34 H 0.40 2.67 6.43 -40.82 -0.26 2.40 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.73 7.62 -51.93 -0.40 0.34 16 38 H 0.10 1.79 7.38 -51.93 -0.38 1.41 16 39 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 40 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 41 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 44 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 45 H 0.15 1.17 7.74 -52.49 -0.41 0.77 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -34.33 377.34 -8.67 -43.00 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.16 Total: 10.03 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.47 Total: 6.67 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.87 Total: -58.50 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.33 -8.67 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713081431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds