Wall clock time and date at job start Tue Mar 31 2020 17:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38350 * 120.34823 * 2 1 4 4 N 1.31924 * 121.07780 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.88131 * 359.76147 * 4 3 2 6 6 C 1.39518 * 120.56432 * 0.50173 * 5 4 3 7 7 C 1.47837 * 120.55802 * 179.77365 * 6 5 4 8 8 O 1.21550 * 120.00187 * 179.71906 * 7 6 5 9 9 N 1.34774 * 120.00264 * 359.71419 * 7 6 5 10 10 C 1.46496 * 120.00365 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.62893 * 31.89381 * 10 9 7 12 12 C 1.55139 * 110.70877 * 268.60150 * 10 9 7 13 13 C 1.54904 * 101.65629 * 205.96217 * 12 10 9 14 14 N 1.47843 * 104.79405 * 37.06983 * 13 12 10 15 15 C 1.46900 * 110.99888 * 213.63369 * 14 13 12 16 16 C 1.50691 * 109.47193 * 290.84246 * 15 14 13 17 17 O 1.21291 * 120.00247 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99768 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99773 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00182 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99652 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47093 * 60.00172 * 23 21 19 25 25 H 1.48508 * 109.47221 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00165 * 23 21 19 27 27 C 1.47446 * 108.56761 * 335.90448 * 14 13 12 28 28 C 1.38357 * 120.34773 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46893 * 269.98150 * 1 2 3 30 30 H 1.08994 * 109.46869 * 29.97888 * 1 2 3 31 31 H 1.08998 * 109.46720 * 149.98309 * 1 2 3 32 32 H 1.08005 * 119.46368 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.71602 * 180.24712 * 5 4 3 34 34 H 0.97002 * 119.99730 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.98834 * 324.05760 * 12 10 9 36 36 H 1.09000 * 110.99151 * 87.83198 * 12 10 9 37 37 H 1.08998 * 110.37178 * 278.24131 * 13 12 10 38 38 H 1.09003 * 110.37142 * 155.89745 * 13 12 10 39 39 H 1.08998 * 109.47082 * 50.84605 * 15 14 13 40 40 H 1.09000 * 109.46598 * 170.84099 * 15 14 13 41 41 H 0.96996 * 119.99808 * 0.02562 * 18 16 15 42 42 H 0.97002 * 120.00786 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.88511 * 120.39826 * 27 14 13 44 44 H 1.08995 * 109.88851 * 241.42128 * 27 14 13 45 45 H 1.08001 * 120.85265 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2350 0.1014 0.0036 6 6 3.6054 -1.1437 -0.0018 7 6 4.4023 -2.3889 -0.0022 8 8 3.8434 -3.4682 -0.0017 9 7 5.7487 -2.3274 -0.0031 10 6 6.5384 -3.5613 -0.0041 11 1 6.0155 -4.3514 -0.5429 12 6 6.8650 -4.0047 1.4463 13 6 8.1676 -4.8171 1.2394 14 7 8.9027 -4.0892 0.1831 15 6 9.6615 -5.0176 -0.6654 16 6 10.7987 -5.6079 0.1279 17 8 10.9608 -5.2871 1.2863 18 7 11.6351 -6.4931 -0.4496 19 6 12.6694 -7.0305 0.2722 20 1 12.8142 -6.7443 1.3035 21 6 13.5319 -7.9427 -0.3233 22 7 13.3560 -8.2906 -1.5782 23 14 14.9416 -8.6744 0.6600 24 1 14.3995 -9.4063 1.8329 25 1 15.7084 -9.6135 -0.1976 26 1 15.8372 -7.5857 1.1267 27 6 7.9340 -3.3154 -0.6150 28 6 2.2061 -1.1940 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6630 2.1275 0.0004 33 1 5.3136 0.1559 0.0071 34 1 6.1948 -1.4660 -0.0031 35 1 7.0409 -3.1415 2.0882 36 1 6.0718 -4.6338 1.8502 37 1 7.9349 -5.8299 0.9106 38 1 8.7505 -4.8404 2.1601 39 1 9.0042 -5.8168 -1.0079 40 1 10.0594 -4.4804 -1.5263 41 1 11.5052 -6.7499 -1.3759 42 1 13.9584 -8.9271 -1.9941 43 1 8.1780 -2.2542 -0.5672 44 1 7.9528 -3.6538 -1.6509 45 1 1.6858 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713081431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:42 Heat of formation + Delta-G solvation = -53.386256 kcal Electronic energy + Delta-G solvation = -27059.162669 eV Core-core repulsion = 23075.424074 eV Total energy + Delta-G solvation = -3983.738595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80909 -40.83761 -40.08414 -38.96597 -36.04480 -35.57712 -34.59148 -33.45552 -33.22157 -31.94618 -29.67405 -28.34439 -28.03116 -26.15939 -25.31092 -23.79167 -22.48840 -22.09097 -21.53461 -20.98620 -19.87447 -18.92267 -18.18464 -17.74459 -17.63657 -17.00537 -16.74262 -16.43517 -16.20872 -16.01702 -15.72130 -15.57719 -15.12957 -14.90857 -14.52545 -14.36445 -14.29581 -14.13480 -13.78051 -13.61856 -13.48986 -13.41530 -13.30414 -12.99429 -12.83290 -12.76455 -12.69495 -12.41983 -12.25101 -12.11992 -11.89700 -11.47136 -11.41724 -10.90576 -10.50613 -10.36101 -10.20359 -9.99278 -9.95364 -9.25993 -8.45039 -5.93601 -0.43747 0.13769 1.40410 1.42006 1.52827 1.71714 1.89584 2.07906 2.29849 2.76553 2.81122 3.21581 3.24729 3.34317 3.57930 3.62467 3.69031 3.77797 3.82016 3.90879 4.00305 4.16496 4.24770 4.29889 4.33525 4.43182 4.50031 4.52899 4.66590 4.74671 4.80561 4.82579 4.86973 4.95072 5.00169 5.11422 5.16385 5.22933 5.37962 5.41961 5.57534 5.84323 5.97905 6.09722 6.37193 6.62595 6.80212 7.03865 7.14711 7.58532 8.14648 8.72118 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.001731 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.914517 B =16170.748133 C =16282.069767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 C 0.119 3.881 4 N -0.504 5.504 5 C 0.128 3.872 6 C -0.194 4.194 7 C 0.566 3.434 8 O -0.574 6.574 9 N -0.697 5.697 10 C 0.133 3.867 11 H 0.089 0.911 12 C -0.128 4.128 13 C 0.055 3.945 14 N -0.519 5.519 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.041 3.959 28 C -0.033 4.033 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.148 18.247 -1.752 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C -0.038 4.038 4 N -0.211 5.211 5 C -0.030 4.030 6 C -0.200 4.200 7 C 0.354 3.646 8 O -0.454 6.454 9 N -0.349 5.349 10 C 0.027 3.973 11 H 0.107 0.893 12 C -0.167 4.167 13 C -0.073 4.073 14 N -0.244 5.244 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.087 4.087 28 C -0.059 4.059 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.206 0.794 33 H 0.197 0.803 34 H 0.255 0.745 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.492 18.709 -0.905 30.833 hybrid contribution 0.224 -1.969 -0.346 2.012 sum -24.267 16.740 -1.251 29.507 Atomic orbital electron populations 1.20829 0.87442 1.04573 1.03857 1.21235 0.99550 0.92849 1.00577 1.23471 0.89589 0.99037 0.91663 1.67778 1.09107 1.31086 1.13155 1.23265 1.01359 0.86170 0.92204 1.20903 0.95400 0.94236 1.09418 1.18315 0.82440 0.88488 0.75375 1.90775 1.71844 1.31192 1.51572 1.45699 1.05178 1.10017 1.74047 1.22083 0.91647 0.87242 0.96323 0.89258 1.23041 0.95963 1.00631 0.97102 1.22862 0.93140 0.95298 0.96021 1.63214 1.24540 1.24850 1.11795 1.22029 0.94293 0.96148 0.95598 1.20780 0.85808 0.82264 0.88313 1.90482 1.75798 1.64302 1.19529 1.41924 1.26381 1.38879 1.14140 1.19620 1.06552 1.23027 0.97075 0.90352 1.26012 1.01101 0.97102 0.97032 1.69661 1.39863 1.34277 1.12375 0.85003 0.77527 0.78060 0.77817 1.19838 1.19515 1.19710 1.23156 0.87811 1.00785 0.96950 1.21810 0.92509 0.99807 0.91818 0.89660 0.88964 0.90797 0.79412 0.80299 0.74483 0.89616 0.90620 0.94448 0.91748 0.91323 0.86719 0.77052 0.91356 0.87876 0.90114 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.03 71.24 0.71 0.16 16 2 C -0.14 -1.55 5.89 -19.81 -0.12 -1.67 16 3 C 0.12 1.33 10.85 84.71 0.92 2.25 16 4 N -0.50 -7.72 10.35 -194.76 -2.01 -9.74 16 5 C 0.13 1.82 10.71 85.02 0.91 2.73 16 6 C -0.19 -3.32 5.89 -20.00 -0.12 -3.43 16 7 C 0.57 11.91 7.78 86.78 0.68 12.58 16 8 O -0.57 -16.56 16.07 -3.87 -0.06 -16.62 16 9 N -0.70 -11.72 5.13 -439.85 -2.26 -13.98 16 10 C 0.13 2.80 3.31 46.17 0.15 2.96 16 11 H 0.09 2.14 7.55 -2.39 -0.02 2.12 16 12 C -0.13 -3.13 6.76 31.98 0.22 -2.91 16 13 C 0.05 1.74 5.74 86.77 0.50 2.24 16 14 N -0.52 -16.11 4.86 -890.13 -4.33 -20.44 16 15 C 0.05 1.72 5.05 85.55 0.43 2.15 16 16 C 0.44 21.00 7.58 87.65 0.66 21.67 16 17 O -0.62 -34.05 14.61 -3.06 -0.04 -34.09 16 18 N -0.58 -29.64 5.29 -306.98 -1.62 -31.27 16 19 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -49.90 13.05 21.66 0.28 -49.61 16 23 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.04 0.86 6.62 86.64 0.57 1.43 16 28 C -0.03 -0.52 9.39 22.73 0.21 -0.31 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 31 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 32 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.18 1.54 6.42 -2.91 -0.02 1.52 16 34 H 0.42 4.48 6.43 -92.71 -0.60 3.89 16 35 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.23 7.62 -2.39 -0.02 1.21 16 38 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 39 H 0.07 2.11 7.85 -2.39 -0.02 2.09 16 40 H 0.11 3.33 8.03 -2.39 -0.02 3.31 16 41 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 42 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.10 1.76 7.72 -2.39 -0.02 1.74 16 44 H 0.08 1.48 7.55 -2.39 -0.02 1.46 16 45 H 0.14 2.30 7.74 -2.91 -0.02 2.28 16 Total: -1.00 -76.06 377.34 -1.29 -77.36 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.29 Total: 31.71 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 7.02 Total: 21.42 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -9.94 Total: -125.03 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.11 Total: -50.71 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.06 -1.29 -77.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713081431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.971 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds