Wall clock time and date at job start Tue Mar 31 2020 17:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38164 * 120.50080 * 2 1 4 4 N 1.31797 * 120.89569 * 180.28812 * 3 2 1 5 5 C 1.31831 * 122.04943 * 359.71999 * 4 3 2 6 6 C 1.38123 * 120.89491 * 0.02562 * 5 4 3 7 7 C 1.39802 * 120.49947 * 179.75236 * 2 1 3 8 8 C 1.48153 * 120.92008 * 359.97438 * 7 2 1 9 9 O 1.21511 * 120.00497 * 353.65302 * 8 7 2 10 10 N 1.34775 * 119.99627 * 173.65786 * 8 7 2 11 11 C 1.46501 * 119.99904 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.90808 * 336.24645 * 11 10 8 13 13 C 1.53782 * 113.61615 * 107.50131 * 11 10 8 14 14 C 1.53782 * 87.08409 * 139.98221 * 13 11 10 15 15 H 1.08993 * 113.61494 * 89.11259 * 14 13 11 16 16 N 1.46898 * 113.69089 * 220.01214 * 14 13 11 17 17 C 1.46902 * 110.99488 * 252.53094 * 16 14 13 18 18 C 1.50699 * 109.46961 * 179.97438 * 17 16 14 19 19 O 1.21299 * 120.00142 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00451 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00433 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00032 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99993 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46925 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47005 * 120.00080 * 25 23 21 28 28 H 1.48500 * 109.47442 * 240.00367 * 25 23 21 29 29 C 1.53782 * 113.61491 * 205.00020 * 11 10 8 30 30 H 1.08998 * 109.47533 * 263.91284 * 1 2 3 31 31 H 1.08993 * 109.47160 * 23.91995 * 1 2 3 32 32 H 1.09005 * 109.47363 * 143.91593 * 1 2 3 33 33 H 1.07997 * 119.55719 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.55413 * 180.02562 * 5 4 3 35 35 H 1.08003 * 120.49844 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00340 * 359.97438 * 10 8 7 37 37 H 1.08997 * 113.61321 * 254.53152 * 13 11 10 38 38 H 1.08995 * 113.61307 * 25.43339 * 13 11 10 39 39 H 1.00896 * 110.99937 * 128.58039 * 16 14 13 40 40 H 1.08992 * 109.47470 * 299.99829 * 17 16 14 41 41 H 1.09001 * 109.47209 * 60.00100 * 17 16 14 42 42 H 0.96999 * 119.99426 * 0.02562 * 20 18 17 43 43 H 0.96998 * 120.00402 * 179.97438 * 24 23 21 44 44 H 1.09004 * 113.61359 * 334.56068 * 29 11 10 45 45 H 1.08998 * 113.61939 * 105.38365 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0061 6 6 3.6137 -1.1474 -0.0011 7 6 2.2165 -1.2046 0.0052 8 6 1.5078 -2.5056 0.0114 9 8 0.2988 -2.5383 0.1283 10 7 2.2041 -3.6528 -0.1126 11 6 1.5033 -4.9393 -0.1070 12 1 0.5375 -4.8941 0.3962 13 6 1.4480 -5.6167 -1.4865 14 6 1.7060 -6.9457 -0.7570 15 1 0.7957 -7.4489 -0.4315 16 7 2.6291 -7.8400 -1.4685 17 6 1.9113 -8.9809 -2.0525 18 6 2.8885 -9.8736 -2.7729 19 8 4.0671 -9.5879 -2.7971 20 7 2.4531 -10.9902 -3.3896 21 6 3.3421 -11.8026 -4.0446 22 1 4.3915 -11.5481 -4.0661 23 6 2.8932 -12.9540 -4.6798 24 7 1.6165 -13.2639 -4.6533 25 14 4.1047 -14.0614 -5.5717 26 1 5.4724 -13.4947 -5.4543 27 1 4.0769 -15.4161 -4.9641 28 1 3.7282 -14.1540 -7.0052 29 6 2.3809 -6.1169 0.3488 30 1 -0.3634 -0.1090 1.0218 31 1 -0.3633 0.9393 -0.4166 32 1 -0.3634 -0.8305 -0.6053 33 1 1.6692 2.1263 -0.0004 34 1 5.3121 0.1415 -0.0105 35 1 4.1994 -2.0548 -0.0019 36 1 3.1692 -3.6267 -0.2062 37 1 0.4682 -5.5620 -1.9608 38 1 2.2586 -5.3193 -2.1517 39 1 3.3707 -8.1525 -0.8599 40 1 1.4194 -9.5449 -1.2601 41 1 1.1637 -8.6174 -2.7576 42 1 1.5107 -11.2189 -3.3700 43 1 1.3031 -14.0674 -5.0970 44 1 3.4465 -5.9563 0.1852 45 1 2.1552 -6.4653 1.3567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713190835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:32 Heat of formation + Delta-G solvation = -11.889016 kcal Electronic energy + Delta-G solvation = -26700.231944 eV Core-core repulsion = 22718.292805 eV Total energy + Delta-G solvation = -3981.939140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20490 -39.94765 -38.69824 -37.98042 -34.88281 -33.97666 -33.79721 -33.12080 -31.87217 -31.20606 -27.89367 -26.92803 -25.88610 -25.35813 -24.28179 -23.17229 -22.23223 -21.07020 -20.05109 -19.23127 -18.31228 -17.89248 -17.30769 -16.50102 -16.01574 -15.80152 -15.62058 -15.55714 -15.29088 -15.23168 -14.48142 -14.33856 -14.20643 -13.99419 -13.83079 -13.46762 -13.35751 -13.06022 -12.85227 -12.59596 -12.53097 -12.15051 -11.99070 -11.78295 -11.58278 -11.30421 -11.06160 -11.05331 -10.70558 -10.53531 -10.36053 -10.29142 -10.24305 -9.72131 -9.54219 -9.44155 -9.27625 -8.48274 -8.12465 -7.98310 -6.43782 -3.84693 0.27283 0.60799 2.49578 2.69513 3.14788 3.25513 3.32616 3.37694 3.88420 3.95048 4.06078 4.12902 4.23731 4.32643 4.36015 4.38867 4.39764 4.52716 4.75745 4.80384 4.90877 5.15701 5.17273 5.22504 5.24307 5.34336 5.37132 5.40618 5.49762 5.59727 5.64148 5.74046 5.77406 5.88932 5.92943 5.99530 6.03818 6.17071 6.23181 6.33897 7.08800 7.21797 7.44501 7.53400 7.60410 7.77851 8.04332 8.58898 9.15798 9.52165 10.03301 10.73963 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.001674 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.070816 B =16726.668972 C =17211.984871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C 0.093 3.907 4 N -0.466 5.466 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.095 4.095 8 C 0.558 3.442 9 O -0.525 6.525 10 N -0.708 5.708 11 C 0.121 3.879 12 H 0.117 0.883 13 C -0.137 4.137 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.654 5.654 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.148 4.148 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.402 0.598 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.351 0.649 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 24.256 12.258 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.065 4.065 4 N -0.175 5.175 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.106 4.106 8 C 0.345 3.655 9 O -0.402 6.402 10 N -0.358 5.358 11 C 0.016 3.984 12 H 0.135 0.865 13 C -0.177 4.177 14 C -0.049 4.049 15 H 0.094 0.906 16 N -0.287 5.287 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.187 4.187 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.171 0.829 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.817 25.373 11.658 27.982 hybrid contribution -0.126 -2.175 0.218 2.189 sum -1.943 23.198 11.876 26.134 Atomic orbital electron populations 1.20993 0.88927 1.03599 1.03889 1.21151 0.98515 0.92445 0.95817 1.22775 0.89756 0.97463 0.96508 1.67557 1.08344 1.31868 1.09709 1.22746 1.00684 0.87187 0.96358 1.22368 0.93843 1.00336 0.99090 1.20270 0.93807 0.93924 1.02614 1.18185 0.87021 0.83641 0.76644 1.90742 1.13447 1.87002 1.48972 1.45899 1.10901 1.05558 1.73486 1.22467 0.97189 0.80131 0.98578 0.86520 1.23586 1.02924 0.94790 0.96355 1.22789 0.95750 0.92892 0.93424 0.90587 1.60196 1.11800 1.18663 1.38009 1.21744 0.96412 0.91593 0.98597 1.19819 0.89269 0.83449 0.84899 1.90520 1.17582 1.73935 1.64861 1.41875 1.10810 1.20386 1.46931 1.19754 0.92517 1.02200 1.28442 0.87858 1.25271 0.96662 0.97982 0.98058 1.69616 1.13529 1.26738 1.44369 0.85797 0.80338 0.79411 0.78775 1.19219 1.20767 1.20726 1.23634 1.00582 0.95364 0.99130 0.90294 0.91754 0.88570 0.82073 0.82031 0.84217 0.76242 0.91168 0.88699 0.82880 0.93748 0.89571 0.77450 0.91902 0.88654 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.83 36.01 0.32 -0.60 16 2 C -0.08 -0.65 5.93 -104.06 -0.62 -1.27 16 3 C 0.09 0.73 10.84 -17.59 -0.19 0.54 16 4 N -0.47 -4.12 10.34 -13.31 -0.14 -4.26 16 5 C 0.09 0.61 11.17 -17.59 -0.20 0.41 16 6 C -0.14 -0.91 9.60 -39.03 -0.37 -1.28 16 7 C -0.10 -0.83 5.91 -104.64 -0.62 -1.45 16 8 C 0.56 5.59 7.73 -12.19 -0.09 5.49 16 9 O -0.52 -6.62 13.14 5.36 0.07 -6.55 16 10 N -0.71 -5.83 5.31 -53.86 -0.29 -6.12 16 11 C 0.12 1.10 4.24 -67.12 -0.28 0.82 16 12 H 0.12 1.15 7.46 -51.93 -0.39 0.76 16 13 C -0.14 -1.47 7.68 -25.92 -0.20 -1.67 16 14 C 0.06 0.70 4.14 -66.90 -0.28 0.42 16 15 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 16 N -0.65 -9.85 6.19 -107.13 -0.66 -10.52 16 17 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 18 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 19 O -0.58 -15.63 15.78 5.54 0.09 -15.55 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 C -0.15 -1.28 7.40 -25.91 -0.19 -1.47 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 32 H 0.10 0.94 5.96 -51.93 -0.31 0.63 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.55 6.58 -52.48 -0.35 0.21 16 36 H 0.40 2.43 6.91 -40.82 -0.28 2.15 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.35 5.40 8.25 -39.29 -0.32 5.07 16 40 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -33.68 379.98 -8.75 -42.43 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.11 Total: 13.92 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.08 Total: 2.93 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.42 Total: -58.81 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.16 Total: -22.10 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.68 -8.75 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713190835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.545 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds