Wall clock time and date at job start Tue Mar 31 2020 17:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38164 * 120.50080 * 2 1 4 4 N 1.31797 * 120.89569 * 180.28812 * 3 2 1 5 5 C 1.31831 * 122.04943 * 359.71999 * 4 3 2 6 6 C 1.38123 * 120.89491 * 0.02562 * 5 4 3 7 7 C 1.39802 * 120.49947 * 179.75236 * 2 1 3 8 8 C 1.48153 * 120.92008 * 359.97438 * 7 2 1 9 9 O 1.21511 * 120.00497 * 353.65302 * 8 7 2 10 10 N 1.34775 * 119.99627 * 173.65786 * 8 7 2 11 11 C 1.46501 * 119.99904 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.90808 * 336.24645 * 11 10 8 13 13 C 1.53782 * 113.61615 * 107.50131 * 11 10 8 14 14 C 1.53782 * 87.08409 * 139.98221 * 13 11 10 15 15 H 1.08993 * 113.61494 * 89.11259 * 14 13 11 16 16 N 1.46898 * 113.69089 * 220.01214 * 14 13 11 17 17 C 1.46902 * 110.99488 * 252.53094 * 16 14 13 18 18 C 1.50699 * 109.46961 * 179.97438 * 17 16 14 19 19 O 1.21299 * 120.00142 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00451 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00433 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00032 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99993 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46925 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47005 * 120.00080 * 25 23 21 28 28 H 1.48500 * 109.47442 * 240.00367 * 25 23 21 29 29 C 1.53782 * 113.61491 * 205.00020 * 11 10 8 30 30 H 1.08998 * 109.47533 * 263.91284 * 1 2 3 31 31 H 1.08993 * 109.47160 * 23.91995 * 1 2 3 32 32 H 1.09005 * 109.47363 * 143.91593 * 1 2 3 33 33 H 1.07997 * 119.55719 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.55413 * 180.02562 * 5 4 3 35 35 H 1.08003 * 120.49844 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00340 * 359.97438 * 10 8 7 37 37 H 1.08997 * 113.61321 * 254.53152 * 13 11 10 38 38 H 1.08995 * 113.61307 * 25.43339 * 13 11 10 39 39 H 1.00896 * 110.99937 * 128.58039 * 16 14 13 40 40 H 1.08992 * 109.47470 * 299.99829 * 17 16 14 41 41 H 1.09001 * 109.47209 * 60.00100 * 17 16 14 42 42 H 0.96999 * 119.99426 * 0.02562 * 20 18 17 43 43 H 0.96998 * 120.00402 * 179.97438 * 24 23 21 44 44 H 1.09004 * 113.61359 * 334.56068 * 29 11 10 45 45 H 1.08998 * 113.61939 * 105.38365 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2334 0.0870 -0.0061 6 6 3.6137 -1.1474 -0.0011 7 6 2.2165 -1.2046 0.0052 8 6 1.5078 -2.5056 0.0114 9 8 0.2988 -2.5383 0.1283 10 7 2.2041 -3.6528 -0.1126 11 6 1.5033 -4.9393 -0.1070 12 1 0.5375 -4.8941 0.3962 13 6 1.4480 -5.6167 -1.4865 14 6 1.7060 -6.9457 -0.7570 15 1 0.7957 -7.4489 -0.4315 16 7 2.6291 -7.8400 -1.4685 17 6 1.9113 -8.9809 -2.0525 18 6 2.8885 -9.8736 -2.7729 19 8 4.0671 -9.5879 -2.7971 20 7 2.4531 -10.9902 -3.3896 21 6 3.3421 -11.8026 -4.0446 22 1 4.3915 -11.5481 -4.0661 23 6 2.8932 -12.9540 -4.6798 24 7 1.6165 -13.2639 -4.6533 25 14 4.1047 -14.0614 -5.5717 26 1 5.4724 -13.4947 -5.4543 27 1 4.0769 -15.4161 -4.9641 28 1 3.7282 -14.1540 -7.0052 29 6 2.3809 -6.1169 0.3488 30 1 -0.3634 -0.1090 1.0218 31 1 -0.3633 0.9393 -0.4166 32 1 -0.3634 -0.8305 -0.6053 33 1 1.6692 2.1263 -0.0004 34 1 5.3121 0.1415 -0.0105 35 1 4.1994 -2.0548 -0.0019 36 1 3.1692 -3.6267 -0.2062 37 1 0.4682 -5.5620 -1.9608 38 1 2.2586 -5.3193 -2.1517 39 1 3.3707 -8.1525 -0.8599 40 1 1.4194 -9.5449 -1.2601 41 1 1.1637 -8.6174 -2.7576 42 1 1.5107 -11.2189 -3.3700 43 1 1.3031 -14.0674 -5.0970 44 1 3.4465 -5.9563 0.1852 45 1 2.1552 -6.4653 1.3567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713190835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:31 Heat of formation + Delta-G solvation = -37.453950 kcal Electronic energy + Delta-G solvation = -26701.340523 eV Core-core repulsion = 22718.292805 eV Total energy + Delta-G solvation = -3983.047719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86281 -40.73002 -40.07683 -39.23900 -36.17030 -35.59939 -34.42501 -34.12081 -33.24453 -32.55022 -28.67705 -28.25204 -26.70213 -26.38076 -25.65695 -24.01085 -22.92361 -21.81810 -21.21098 -20.71010 -19.90434 -18.97630 -18.10708 -17.67980 -17.02526 -16.85228 -16.48265 -16.41514 -16.31959 -16.18706 -16.08292 -15.73061 -15.19875 -14.95885 -14.92232 -14.40197 -14.31088 -14.22151 -13.66547 -13.52596 -13.42243 -13.38029 -13.26085 -13.07279 -12.87807 -12.53140 -12.41374 -12.21789 -12.12581 -11.94536 -11.55514 -11.50929 -11.25836 -10.92146 -10.38271 -10.32629 -10.10199 -10.01881 -9.91919 -9.32175 -8.47141 -5.95925 -0.35156 0.06580 1.36604 1.42029 1.56146 1.78045 1.98864 2.05019 2.29263 2.79123 2.97661 3.20377 3.44280 3.47872 3.48952 3.58922 3.66511 3.77063 3.81718 3.94016 3.96755 4.03481 4.31023 4.41427 4.45721 4.53473 4.60058 4.62791 4.74226 4.77114 4.80884 4.83184 4.84218 4.98831 5.04704 5.10968 5.12699 5.37585 5.41003 5.53298 5.62122 5.92472 6.14286 6.42480 6.44004 6.59625 6.89239 7.07079 7.12283 7.56090 8.10972 8.70430 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.001674 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.070816 B =16726.668972 C =17211.984871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.088 3.912 4 N -0.488 5.488 5 C 0.081 3.919 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.556 3.444 9 O -0.557 6.557 10 N -0.698 5.698 11 C 0.130 3.870 12 H 0.112 0.888 13 C -0.139 4.139 14 C 0.058 3.942 15 H 0.088 0.912 16 N -0.666 5.666 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.132 4.132 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.167 0.833 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.348 0.652 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.102 0.898 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 24.663 12.872 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.069 4.069 4 N -0.197 5.197 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.123 4.123 8 C 0.344 3.656 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.024 3.976 12 H 0.130 0.870 13 C -0.178 4.178 14 C -0.052 4.052 15 H 0.105 0.895 16 N -0.299 5.299 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.171 4.171 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.206 0.794 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.355 25.789 12.281 28.597 hybrid contribution -0.259 -2.238 0.036 2.253 sum -1.614 23.551 12.317 26.627 Atomic orbital electron populations 1.20907 0.88855 1.03742 1.03331 1.21299 0.98780 0.92838 0.96338 1.23080 0.89712 0.98038 0.96080 1.67603 1.08815 1.32883 1.10378 1.23244 1.01944 0.86846 0.95431 1.22637 0.93076 1.01468 0.97711 1.20335 0.94822 0.93320 1.03831 1.18432 0.86739 0.84382 0.76068 1.90730 1.14829 1.87485 1.50545 1.45798 1.11471 1.04885 1.72717 1.22288 0.97330 0.80607 0.97336 0.87040 1.23562 1.02176 0.95081 0.97006 1.22916 0.95842 0.92207 0.94257 0.89464 1.60176 1.12594 1.18053 1.39081 1.21595 0.94844 0.91423 0.98995 1.20904 0.89814 0.83067 0.83691 1.90486 1.19774 1.74719 1.65952 1.41954 1.10650 1.21023 1.47505 1.19712 0.92122 1.03863 1.30620 0.90248 1.26051 0.98448 0.98679 0.98176 1.69675 1.14642 1.27270 1.44572 0.84863 0.77823 0.77684 0.77913 1.19730 1.19572 1.19714 1.23545 1.00612 0.93845 0.99051 0.90687 0.89688 0.90791 0.80089 0.79437 0.81517 0.74838 0.91737 0.89800 0.83186 0.91329 0.88322 0.77006 0.91317 0.88002 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.83 71.24 0.63 -1.11 16 2 C -0.09 -1.48 5.93 -19.50 -0.12 -1.59 16 3 C 0.09 1.29 10.84 84.68 0.92 2.21 16 4 N -0.49 -7.95 10.34 -196.01 -2.03 -9.97 16 5 C 0.08 0.99 11.17 84.67 0.95 1.93 16 6 C -0.13 -1.48 9.60 22.63 0.22 -1.26 16 7 C -0.11 -1.86 5.91 -19.88 -0.12 -1.98 16 8 C 0.56 10.79 7.73 86.88 0.67 11.47 16 9 O -0.56 -14.17 13.14 -3.75 -0.05 -14.22 16 10 N -0.70 -10.49 5.31 -442.62 -2.35 -12.84 16 11 C 0.13 2.16 4.24 45.52 0.19 2.36 16 12 H 0.11 2.06 7.46 -2.39 -0.02 2.05 16 13 C -0.14 -2.83 7.68 31.12 0.24 -2.59 16 14 C 0.06 1.19 4.14 45.45 0.19 1.37 16 15 H 0.09 1.63 7.86 -2.39 -0.02 1.62 16 16 N -0.67 -19.21 6.19 -492.85 -3.05 -22.26 16 17 C 0.06 2.11 6.01 85.56 0.51 2.62 16 18 C 0.44 20.45 7.82 87.66 0.69 21.14 16 19 O -0.62 -33.85 15.78 -3.09 -0.05 -33.89 16 20 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 21 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 25 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 C -0.13 -1.97 7.40 31.12 0.23 -1.74 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 0.90 8.06 -2.39 -0.02 0.88 16 32 H 0.07 1.51 5.96 -2.38 -0.01 1.50 16 33 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.17 0.85 6.58 -2.91 -0.02 0.83 16 36 H 0.41 4.12 6.91 -92.71 -0.64 3.48 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.35 10.31 8.25 -89.70 -0.74 9.57 16 40 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 41 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 43 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.10 1.43 8.12 -2.38 -0.02 1.41 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.69 379.98 -1.41 -75.10 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.05 Total: 38.94 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.48 Total: 14.52 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -8.77 Total: -125.16 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.10 Total: -48.11 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.69 -1.41 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713190835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.645 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds