Wall clock time and date at job start Tue Mar 31 2020 16:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38169 * 119.55153 * 2 1 4 4 C 1.39802 * 118.99894 * 180.02562 * 3 2 1 5 5 C 1.48149 * 120.92161 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99853 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99856 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99677 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.28152 * 327.08866 * 8 7 5 10 10 C 1.54597 * 110.30748 * 89.28447 * 8 7 5 11 11 C 1.54940 * 102.92214 * 140.86865 * 10 8 7 12 12 N 1.48527 * 103.22612 * 322.58629 * 11 10 8 13 13 C 1.46902 * 110.99964 * 159.71987 * 12 11 10 14 14 C 1.50702 * 109.47027 * 52.60122 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31411 * 119.99899 * 180.27617 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 0.27431 * 19 17 16 22 22 H 1.48508 * 109.46685 * 89.99768 * 21 19 17 23 23 H 1.48494 * 109.47357 * 209.99847 * 21 19 17 24 24 H 1.48494 * 109.47227 * 330.00365 * 21 19 17 25 25 C 1.47896 * 105.82134 * 39.20939 * 12 11 10 26 26 C 1.39834 * 118.15222 * 0.25019 * 4 3 2 27 27 C 1.38125 * 119.00587 * 359.52863 * 26 4 3 28 28 N 1.31792 * 119.55030 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47051 * 89.99513 * 1 2 3 30 30 H 1.08998 * 109.47065 * 209.99602 * 1 2 3 31 31 H 1.09000 * 109.47184 * 330.00232 * 1 2 3 32 32 H 1.07998 * 120.50096 * 359.97438 * 3 2 1 33 33 H 0.96993 * 119.99542 * 359.97438 * 7 5 4 34 34 H 1.09001 * 110.72499 * 259.22730 * 10 8 7 35 35 H 1.09008 * 110.72586 * 22.33508 * 10 8 7 36 36 H 1.09002 * 110.66618 * 204.14629 * 11 10 8 37 37 H 1.09002 * 110.66469 * 81.02379 * 11 10 8 38 38 H 1.09004 * 109.47131 * 292.60366 * 13 12 11 39 39 H 1.08994 * 109.47471 * 172.60116 * 13 12 11 40 40 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 41 41 H 0.97005 * 120.00019 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.92297 * 94.01998 * 25 12 11 43 43 H 1.09008 * 109.91662 * 215.11899 * 25 12 11 44 44 H 1.08005 * 120.49709 * 179.72360 * 26 4 3 45 45 H 1.08003 * 119.55570 * 180.22472 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5865 1.1885 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7797 3.5196 -0.0016 7 7 5.7073 2.4173 -0.0022 8 6 6.4721 3.6667 -0.0033 9 1 5.9369 4.4369 -0.5588 10 6 6.7380 4.1344 1.4460 11 6 8.1879 4.6759 1.3749 12 7 8.8577 3.7324 0.4437 13 6 10.0742 4.3283 -0.1247 14 6 10.9523 4.8368 0.9895 15 8 10.5997 4.7144 2.1436 16 7 12.1296 5.4276 0.7037 17 6 12.9286 5.8896 1.7173 18 1 12.6150 5.7799 2.7450 19 6 14.1449 6.4935 1.4229 20 7 14.9133 6.9316 2.3947 21 14 14.6878 6.6827 -0.3545 22 1 14.1977 7.9797 -0.8863 23 1 16.1706 6.6470 -0.4256 24 1 14.1264 5.5718 -1.1644 25 6 7.8671 3.4390 -0.6146 26 6 4.2343 -0.0507 -0.0065 27 6 3.4741 -1.2040 -0.0015 28 7 2.1570 -1.1465 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 -0.0004 33 1 6.1704 1.5651 -0.0022 34 1 6.0441 4.9259 1.7293 35 1 6.6697 3.2968 2.1403 36 1 8.6585 4.6457 2.3577 37 1 8.2010 5.6886 0.9720 38 1 9.8017 5.1563 -0.7791 39 1 10.6143 3.5748 -0.6979 40 1 12.4117 5.5252 -0.2192 41 1 15.7623 7.3535 2.1892 42 1 8.0164 4.1110 -1.4598 43 1 7.9681 2.4039 -0.9411 44 1 5.3130 -0.1053 -0.0116 45 1 3.9653 -2.1658 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713831343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:44 Heat of formation + Delta-G solvation = -15.017674 kcal Electronic energy + Delta-G solvation = -27215.401979 eV Core-core repulsion = 23233.327171 eV Total energy + Delta-G solvation = -3982.074809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09219 -39.92329 -38.97889 -37.61492 -34.80801 -34.00512 -33.47848 -32.82336 -31.78930 -30.98768 -28.60095 -28.09560 -26.86549 -24.85405 -23.95035 -23.24866 -21.35384 -21.04243 -20.65846 -19.47620 -18.43659 -18.16716 -17.22028 -16.34518 -16.12857 -15.94449 -15.61407 -15.45706 -15.39014 -14.88075 -14.78911 -14.53767 -14.31051 -14.03460 -13.64952 -13.41244 -13.19198 -12.91352 -12.72617 -12.62845 -12.61639 -12.20695 -12.15193 -12.00960 -11.77366 -11.62071 -11.23125 -11.12024 -10.76689 -10.61159 -10.55643 -10.31906 -10.02198 -9.90767 -9.61078 -9.44521 -9.38413 -8.55430 -8.25832 -8.11680 -6.35843 -3.87523 0.28152 0.61260 2.51487 2.68864 2.98713 3.03049 3.11801 3.38828 3.66182 3.80329 3.94882 4.06039 4.12485 4.23111 4.40258 4.48390 4.57743 4.66988 4.81426 4.90799 5.02362 5.04625 5.15702 5.17169 5.25512 5.31896 5.33633 5.44171 5.53833 5.55906 5.57463 5.59855 5.65579 5.74780 5.85610 5.94346 6.10282 6.15301 6.27956 6.55069 7.02333 7.03856 7.14379 7.46997 7.52632 7.79533 8.09390 8.54125 8.89919 9.36789 9.76411 10.77013 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.001843 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.777806 B =15190.558889 C =15312.412530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.124 3.876 3 C -0.116 4.116 4 C -0.082 4.082 5 C 0.558 3.442 6 O -0.529 6.529 7 N -0.709 5.709 8 C 0.135 3.865 9 H 0.097 0.903 10 C -0.135 4.135 11 C 0.037 3.963 12 N -0.494 5.494 13 C 0.033 3.967 14 C 0.450 3.550 15 O -0.562 6.562 16 N -0.587 5.587 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.879 5.879 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.027 3.973 26 C -0.149 4.149 27 C 0.103 3.897 28 N -0.472 5.472 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.291 -13.435 -10.346 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.136 4.136 4 C -0.093 4.093 5 C 0.344 3.656 6 O -0.405 6.405 7 N -0.361 5.361 8 C 0.030 3.970 9 H 0.115 0.885 10 C -0.174 4.174 11 C -0.090 4.090 12 N -0.218 5.218 13 C -0.099 4.099 14 C 0.236 3.764 15 O -0.445 6.445 16 N -0.226 5.226 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.102 4.102 26 C -0.170 4.170 27 C -0.054 4.054 28 N -0.182 5.182 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.159 0.841 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.007 -13.849 -9.231 29.212 hybrid contribution 1.390 1.304 -1.927 2.710 sum -22.617 -12.545 -11.158 28.167 Atomic orbital electron populations 1.20752 0.88187 1.03872 1.03428 1.21347 0.97423 0.87769 0.94817 1.22137 0.93269 1.00178 0.98036 1.20395 0.94549 0.93540 1.00807 1.18178 0.82335 0.88424 0.76684 1.90788 1.69865 1.30744 1.49146 1.46018 1.05639 1.10075 1.74367 1.21944 0.91260 0.85921 0.97876 0.88480 1.23006 0.97341 1.01578 0.95499 1.23519 0.91587 0.93038 1.00869 1.64647 1.03046 1.41280 1.12842 1.22153 0.92634 0.98594 0.96522 1.19577 0.83287 0.83707 0.89861 1.90484 1.72733 1.60090 1.21179 1.42194 1.18257 1.53824 1.08345 1.19431 0.98996 1.34713 0.90333 0.86210 1.25046 0.95985 0.97154 0.97907 1.69620 1.11982 1.38871 1.31412 0.86674 0.79396 0.78840 0.84498 1.19636 1.20113 1.19478 1.23192 0.90361 1.02262 0.94392 1.22363 1.01671 0.92634 1.00286 1.22759 0.89123 0.98520 0.95008 1.67415 1.10342 1.29512 1.10954 0.90098 0.90156 0.90328 0.83445 0.76096 0.90668 0.90348 0.85925 0.94114 0.93037 0.88990 0.79664 0.91555 0.92634 0.89864 0.84145 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.17 36.01 0.37 -0.21 16 2 C 0.12 1.03 6.78 -82.63 -0.56 0.47 16 3 C -0.12 -1.03 9.31 -39.02 -0.36 -1.39 16 4 C -0.08 -0.75 5.91 -104.65 -0.62 -1.37 16 5 C 0.56 6.12 7.80 -12.19 -0.10 6.03 16 6 O -0.53 -7.58 16.10 5.36 0.09 -7.50 16 7 N -0.71 -6.62 5.02 -53.34 -0.27 -6.89 16 8 C 0.13 1.48 3.34 -66.57 -0.22 1.26 16 9 H 0.10 1.14 7.56 -51.93 -0.39 0.75 16 10 C -0.14 -1.72 6.78 -24.87 -0.17 -1.89 16 11 C 0.04 0.58 5.30 -1.90 -0.01 0.57 16 12 N -0.49 -7.34 5.26 -231.89 -1.22 -8.56 16 13 C 0.03 0.52 5.52 -4.97 -0.03 0.49 16 14 C 0.45 9.80 7.49 -10.98 -0.08 9.72 16 15 O -0.56 -14.25 13.10 5.55 0.07 -14.18 16 16 N -0.59 -13.58 5.09 -10.96 -0.06 -13.64 16 17 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 21 Si 0.88 18.98 27.74 -169.99 -4.72 14.27 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.27 6.51 56.52 0.37 -4.91 16 25 C 0.03 0.29 6.46 -2.76 -0.02 0.27 16 26 C -0.15 -1.04 9.62 -39.03 -0.38 -1.41 16 27 C 0.10 0.74 11.17 -17.59 -0.20 0.54 16 28 N -0.47 -4.26 10.25 -9.52 -0.10 -4.35 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.15 1.25 7.74 -52.49 -0.41 0.84 16 33 H 0.40 2.80 6.50 -40.82 -0.27 2.54 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.01 8.06 -51.92 -0.42 0.59 16 36 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 37 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16 38 H 0.05 0.72 7.81 -51.93 -0.41 0.32 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 43 H 0.08 0.76 7.66 -51.92 -0.40 0.36 16 44 H 0.14 0.60 6.54 -52.48 -0.34 0.26 16 45 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -34.35 372.11 -8.51 -42.86 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.07 Total: 11.41 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.62 Total: 5.51 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.87 Total: -57.97 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.16 Total: -21.68 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.72 Total: 14.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -8.51 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713831343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.843 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds