Wall clock time and date at job start Tue Mar 31 2020 16:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38169 * 119.55153 * 2 1 4 4 C 1.39802 * 118.99894 * 180.02562 * 3 2 1 5 5 C 1.48149 * 120.92161 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99853 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99856 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99677 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.28152 * 327.08866 * 8 7 5 10 10 C 1.54597 * 110.30748 * 89.28447 * 8 7 5 11 11 C 1.54940 * 102.92214 * 140.86865 * 10 8 7 12 12 N 1.48527 * 103.22612 * 322.58629 * 11 10 8 13 13 C 1.46902 * 110.99964 * 159.71987 * 12 11 10 14 14 C 1.50702 * 109.47027 * 52.60122 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31411 * 119.99899 * 180.27617 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 0.27431 * 19 17 16 22 22 H 1.48508 * 109.46685 * 89.99768 * 21 19 17 23 23 H 1.48494 * 109.47357 * 209.99847 * 21 19 17 24 24 H 1.48494 * 109.47227 * 330.00365 * 21 19 17 25 25 C 1.47896 * 105.82134 * 39.20939 * 12 11 10 26 26 C 1.39834 * 118.15222 * 0.25019 * 4 3 2 27 27 C 1.38125 * 119.00587 * 359.52863 * 26 4 3 28 28 N 1.31792 * 119.55030 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47051 * 89.99513 * 1 2 3 30 30 H 1.08998 * 109.47065 * 209.99602 * 1 2 3 31 31 H 1.09000 * 109.47184 * 330.00232 * 1 2 3 32 32 H 1.07998 * 120.50096 * 359.97438 * 3 2 1 33 33 H 0.96993 * 119.99542 * 359.97438 * 7 5 4 34 34 H 1.09001 * 110.72499 * 259.22730 * 10 8 7 35 35 H 1.09008 * 110.72586 * 22.33508 * 10 8 7 36 36 H 1.09002 * 110.66618 * 204.14629 * 11 10 8 37 37 H 1.09002 * 110.66469 * 81.02379 * 11 10 8 38 38 H 1.09004 * 109.47131 * 292.60366 * 13 12 11 39 39 H 1.08994 * 109.47471 * 172.60116 * 13 12 11 40 40 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 41 41 H 0.97005 * 120.00019 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.92297 * 94.01998 * 25 12 11 43 43 H 1.09008 * 109.91662 * 215.11899 * 25 12 11 44 44 H 1.08005 * 120.49709 * 179.72360 * 26 4 3 45 45 H 1.08003 * 119.55570 * 180.22472 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5865 1.1885 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7797 3.5196 -0.0016 7 7 5.7073 2.4173 -0.0022 8 6 6.4721 3.6667 -0.0033 9 1 5.9369 4.4369 -0.5588 10 6 6.7380 4.1344 1.4460 11 6 8.1879 4.6759 1.3749 12 7 8.8577 3.7324 0.4437 13 6 10.0742 4.3283 -0.1247 14 6 10.9523 4.8368 0.9895 15 8 10.5997 4.7144 2.1436 16 7 12.1296 5.4276 0.7037 17 6 12.9286 5.8896 1.7173 18 1 12.6150 5.7799 2.7450 19 6 14.1449 6.4935 1.4229 20 7 14.9133 6.9316 2.3947 21 14 14.6878 6.6827 -0.3545 22 1 14.1977 7.9797 -0.8863 23 1 16.1706 6.6470 -0.4256 24 1 14.1264 5.5718 -1.1644 25 6 7.8671 3.4390 -0.6146 26 6 4.2343 -0.0507 -0.0065 27 6 3.4741 -1.2040 -0.0015 28 7 2.1570 -1.1465 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 -0.0004 33 1 6.1704 1.5651 -0.0022 34 1 6.0441 4.9259 1.7293 35 1 6.6697 3.2968 2.1403 36 1 8.6585 4.6457 2.3577 37 1 8.2010 5.6886 0.9720 38 1 9.8017 5.1563 -0.7791 39 1 10.6143 3.5748 -0.6979 40 1 12.4117 5.5252 -0.2192 41 1 15.7623 7.3535 2.1892 42 1 8.0164 4.1110 -1.4598 43 1 7.9681 2.4039 -0.9411 44 1 5.3130 -0.1053 -0.0116 45 1 3.9653 -2.1658 -0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713831343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:43 Heat of formation + Delta-G solvation = -42.957918 kcal Electronic energy + Delta-G solvation = -27216.613559 eV Core-core repulsion = 23233.327171 eV Total energy + Delta-G solvation = -3983.286389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80589 -40.94845 -40.22416 -38.95391 -36.13293 -35.54334 -34.18088 -33.77077 -33.42388 -32.12825 -29.61941 -28.60214 -28.30535 -26.04082 -25.24701 -23.82569 -22.54325 -21.92951 -21.49763 -21.30436 -20.19757 -18.98381 -17.99078 -17.70195 -17.15535 -16.82255 -16.71198 -16.52038 -16.32986 -16.18926 -15.95864 -15.46506 -15.24245 -15.10093 -14.90171 -14.65465 -14.42969 -14.19195 -13.99501 -13.54143 -13.34568 -13.24996 -13.12088 -13.08392 -12.79817 -12.67842 -12.63623 -12.40418 -12.29628 -11.98252 -11.87068 -11.47819 -11.42258 -10.99971 -10.54468 -10.42927 -10.25177 -10.06529 -9.98269 -9.37100 -8.41035 -6.01826 -0.37535 0.05335 1.30455 1.35723 1.44866 1.74210 1.89374 1.95153 2.23240 2.67175 2.77966 3.15153 3.17253 3.32658 3.40370 3.56025 3.72472 3.73924 3.93013 4.01124 4.08227 4.14513 4.28460 4.36727 4.40129 4.43989 4.53304 4.56675 4.69465 4.71325 4.75810 4.77552 4.86594 4.92819 5.02655 5.05369 5.16914 5.22858 5.37717 5.53144 5.62165 5.82725 5.89936 6.03355 6.36971 6.59411 6.89057 6.90457 7.01236 7.39596 7.97008 8.76437 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.001843 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.777806 B =15190.558889 C =15312.412530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.115 3.885 3 C -0.129 4.129 4 C -0.097 4.097 5 C 0.559 3.441 6 O -0.569 6.569 7 N -0.695 5.695 8 C 0.143 3.857 9 H 0.094 0.906 10 C -0.127 4.127 11 C 0.039 3.961 12 N -0.508 5.508 13 C 0.043 3.957 14 C 0.448 3.552 15 O -0.605 6.605 16 N -0.590 5.590 17 C -0.327 4.327 18 H 0.055 0.945 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.229 1.229 25 C 0.033 3.967 26 C -0.139 4.139 27 C 0.099 3.901 28 N -0.492 5.492 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.417 0.583 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.170 0.830 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.735 -15.295 -14.358 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.022 4.022 3 C -0.149 4.149 4 C -0.108 4.108 5 C 0.347 3.653 6 O -0.448 6.448 7 N -0.348 5.348 8 C 0.038 3.962 9 H 0.112 0.888 10 C -0.166 4.166 11 C -0.088 4.088 12 N -0.233 5.233 13 C -0.088 4.088 14 C 0.236 3.764 15 O -0.490 6.490 16 N -0.232 5.232 17 C -0.456 4.456 18 H 0.074 0.926 19 C -0.214 4.214 20 N -0.575 5.575 21 Si 0.784 3.216 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.152 1.152 25 C -0.095 4.095 26 C -0.160 4.160 27 C -0.058 4.058 28 N -0.203 5.203 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.188 0.812 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -24.470 -15.756 -13.260 31.983 hybrid contribution 1.443 1.821 -0.517 2.380 sum -23.027 -13.935 -13.777 30.236 Atomic orbital electron populations 1.20820 0.86649 1.04451 1.04220 1.21684 0.98608 0.87404 0.94516 1.22212 0.93564 1.00393 0.98775 1.20370 0.94614 0.93561 1.02297 1.18450 0.82647 0.88505 0.75748 1.90770 1.70666 1.32292 1.51118 1.45860 1.05135 1.10255 1.73532 1.21759 0.91814 0.86526 0.96136 0.88845 1.22882 0.95332 1.01288 0.97114 1.23254 0.93082 0.93381 0.99131 1.64622 1.03738 1.40627 1.14352 1.22137 0.92060 1.00520 0.94086 1.20872 0.82943 0.81598 0.91013 1.90503 1.73558 1.60960 1.23941 1.42020 1.18446 1.54576 1.08132 1.18994 1.00714 1.36795 0.89143 0.92636 1.26117 0.95205 0.95786 1.04294 1.69807 1.12751 1.40030 1.34933 0.85373 0.78688 0.80510 0.77008 1.18339 1.20147 1.15181 1.23269 0.88421 1.04389 0.93427 1.22640 1.03104 0.91476 0.98734 1.23312 0.88707 0.99880 0.93866 1.67480 1.11471 1.29801 1.11548 0.89126 0.90025 0.89285 0.83857 0.74403 0.91038 0.90680 0.90376 0.94717 0.89980 0.85611 0.77483 0.91195 0.90601 0.87046 0.81236 0.79002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.24 0.72 -0.32 16 2 C 0.11 1.81 6.78 42.55 0.29 2.10 16 3 C -0.13 -2.23 9.31 22.63 0.21 -2.02 16 4 C -0.10 -1.65 5.91 -19.88 -0.12 -1.76 16 5 C 0.56 11.50 7.80 86.88 0.68 12.18 16 6 O -0.57 -16.13 16.10 -3.75 -0.06 -16.19 16 7 N -0.70 -11.18 5.02 -440.96 -2.21 -13.39 16 8 C 0.14 2.81 3.34 45.87 0.15 2.96 16 9 H 0.09 1.99 7.56 -2.39 -0.02 1.97 16 10 C -0.13 -3.18 6.78 31.80 0.22 -2.96 16 11 C 0.04 1.24 5.30 86.65 0.46 1.70 16 12 N -0.51 -13.88 5.26 -887.56 -4.67 -18.55 16 13 C 0.04 1.22 5.52 85.56 0.47 1.69 16 14 C 0.45 19.38 7.49 87.66 0.66 20.03 16 15 O -0.61 -32.06 13.10 -3.07 -0.04 -32.10 16 16 N -0.59 -26.97 5.09 -306.97 -1.56 -28.53 16 17 C -0.33 -18.84 10.16 84.04 0.85 -17.99 16 18 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 19 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 20 N -0.93 -55.91 13.96 21.66 0.30 -55.61 16 21 Si 0.96 37.99 27.74 68.60 1.90 39.89 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.23 -7.45 6.51 99.48 0.65 -6.80 16 25 C 0.03 0.58 6.46 86.45 0.56 1.14 16 26 C -0.14 -1.55 9.62 22.63 0.22 -1.34 16 27 C 0.10 1.16 11.17 84.67 0.95 2.11 16 28 N -0.49 -8.09 10.25 -184.04 -1.89 -9.97 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.14 2.48 7.74 -2.91 -0.02 2.46 16 33 H 0.42 4.25 6.50 -92.71 -0.60 3.64 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 36 H 0.08 3.18 5.97 -2.39 -0.01 3.17 16 37 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 38 H 0.08 1.90 7.81 -2.38 -0.02 1.88 16 39 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.39 14.61 5.76 -92.71 -0.53 14.07 16 41 H 0.28 15.24 8.31 -92.70 -0.77 14.47 16 42 H 0.08 1.12 7.57 -2.39 -0.02 1.10 16 43 H 0.11 1.40 7.66 -2.38 -0.02 1.39 16 44 H 0.17 0.76 6.54 -2.91 -0.02 0.74 16 45 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -82.32 372.11 -1.59 -83.92 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.15 Total: 33.39 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.78 Total: 17.14 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -10.03 Total: -126.05 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.10 Total: -48.29 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -82.32 -1.59 -83.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713831343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.959 kcal (2) G-P(sol) polarization free energy of solvation -82.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds