Wall clock time and date at job start Tue Mar 31 2020 17:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38217 * 120.41979 * 2 1 4 4 N 1.31861 * 120.76646 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.72144 * 359.70699 * 4 3 2 6 6 C 1.38180 * 120.76567 * 0.58143 * 5 4 3 7 7 C 1.50709 * 120.41768 * 179.70095 * 6 5 4 8 8 C 1.50700 * 109.47279 * 269.72463 * 7 6 5 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00069 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.53932 * 113.73412 * 108.27085 * 11 10 8 13 13 N 1.47959 * 86.18045 * 90.64001 * 12 11 10 14 14 C 1.46902 * 110.99905 * 137.58303 * 13 12 11 15 15 C 1.50699 * 109.47319 * 70.64321 * 14 13 12 16 16 O 1.21291 * 119.99712 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00368 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00565 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99891 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00760 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00603 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99597 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47398 * 89.99619 * 22 20 18 24 24 H 1.48496 * 109.47234 * 210.00303 * 22 20 18 25 25 H 1.48504 * 109.47141 * 329.99883 * 22 20 18 26 26 C 1.47957 * 90.76368 * 24.69138 * 13 12 11 27 27 C 1.38637 * 120.41854 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47624 * 269.97630 * 1 2 3 29 29 H 1.09001 * 109.47146 * 29.98296 * 1 2 3 30 30 H 1.09005 * 109.47499 * 149.97627 * 1 2 3 31 31 H 1.07998 * 119.62006 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.61764 * 180.31012 * 5 4 3 33 33 H 1.08996 * 109.46693 * 149.72475 * 7 6 5 34 34 H 1.08998 * 109.47043 * 29.72845 * 7 6 5 35 35 H 0.97003 * 119.99993 * 0.02562 * 10 8 7 36 36 H 1.09000 * 113.00735 * 336.63911 * 11 10 8 37 37 H 1.09004 * 113.75969 * 204.95796 * 12 11 10 38 38 H 1.08999 * 113.76302 * 336.32252 * 12 11 10 39 39 H 1.09007 * 109.46697 * 190.64055 * 14 13 12 40 40 H 1.09001 * 109.46915 * 310.63777 * 14 13 12 41 41 H 0.97011 * 119.99660 * 359.97438 * 17 15 14 42 42 H 0.97001 * 120.00504 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.75975 * 220.99328 * 26 13 12 44 44 H 1.08998 * 113.76273 * 89.62912 * 26 13 12 45 45 H 1.08003 * 120.78945 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5947 -1.1471 -0.0011 7 6 4.4027 -2.4193 -0.0019 8 6 4.6713 -2.8430 -1.4229 9 8 4.2488 -2.1771 -2.3443 10 7 5.3811 -3.9617 -1.6698 11 6 5.6428 -4.3733 -3.0513 12 6 7.1065 -4.1823 -3.4879 13 7 7.3262 -5.5647 -3.0084 14 6 8.1708 -6.3186 -3.9445 15 6 9.5823 -5.7945 -3.8814 16 8 9.8575 -4.8823 -3.1308 17 7 10.5389 -6.3393 -4.6589 18 6 11.8228 -5.8622 -4.6019 19 1 12.0679 -5.0500 -3.9335 20 6 12.8092 -6.4242 -5.4031 21 7 14.0400 -5.9672 -5.3481 22 14 12.3855 -7.8296 -6.5585 23 1 11.9763 -7.2808 -7.8763 24 1 13.5742 -8.7023 -6.7332 25 1 11.2691 -8.6230 -5.9845 26 6 5.8956 -5.8833 -3.2106 27 6 2.2089 -1.1955 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6674 2.1276 0.0004 32 1 5.3046 0.1285 0.0092 33 1 3.8464 -3.2032 0.5120 34 1 5.3489 -2.2491 0.5116 35 1 5.7187 -4.4944 -0.9328 36 1 4.9178 -3.9726 -3.7597 37 1 7.2320 -4.0657 -4.5644 38 1 7.6418 -3.4275 -2.9120 39 1 8.1626 -7.3741 -3.6720 40 1 7.7847 -6.2018 -4.9571 41 1 10.3189 -7.0691 -5.2589 42 1 14.7286 -6.3598 -5.9071 43 1 5.4632 -6.4875 -2.4130 44 1 5.6668 -6.2643 -4.2059 45 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713832075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:35 Heat of formation + Delta-G solvation = 4.381492 kcal Electronic energy + Delta-G solvation = -26994.510213 eV Core-core repulsion = 23013.276615 eV Total energy + Delta-G solvation = -3981.233598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87589 -40.35461 -39.02566 -37.82886 -34.16513 -33.92498 -33.84136 -33.74803 -31.71130 -30.12760 -28.30973 -27.58247 -26.12001 -25.59326 -23.70383 -23.31605 -22.10414 -20.57170 -19.87884 -19.38013 -18.38075 -17.39412 -17.19699 -16.97895 -16.39980 -16.13997 -15.50662 -15.23810 -15.05729 -14.79196 -14.61276 -14.54316 -13.94390 -13.69062 -13.51553 -13.31995 -13.21757 -13.10318 -12.96222 -12.86593 -12.76523 -12.43881 -12.40722 -12.00483 -11.73269 -11.64584 -11.27213 -11.18173 -10.84651 -10.62156 -10.21314 -9.99774 -9.79773 -9.67597 -9.59376 -9.18027 -9.05399 -8.81461 -8.39370 -8.20170 -6.33170 -3.84762 0.82341 1.03286 2.43550 2.92968 3.00077 3.04346 3.12946 3.57825 3.69799 3.89576 4.07886 4.10607 4.33044 4.36893 4.42788 4.63952 4.66455 4.69597 4.73882 4.80713 4.82704 4.98448 5.14204 5.15795 5.19033 5.27369 5.37104 5.38841 5.49241 5.50097 5.51744 5.61304 5.65404 5.72171 5.88327 5.90221 5.96285 6.08270 6.37427 6.45339 6.49763 6.99073 7.36006 7.55208 7.75161 8.06012 8.11580 8.57217 8.92729 9.39821 9.80064 10.79907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.001857 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.916311 B =15072.812450 C =15656.501634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.095 3.905 4 N -0.480 5.480 5 C 0.108 3.892 6 C -0.111 4.111 7 C -0.099 4.099 8 C 0.517 3.483 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.113 3.887 12 C 0.009 3.991 13 N -0.453 5.453 14 C 0.007 3.993 15 C 0.452 3.548 16 O -0.561 6.561 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.270 1.270 26 C -0.009 4.009 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.697 3.106 9.603 29.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.062 4.062 4 N -0.187 5.187 5 C -0.049 4.049 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.303 3.697 9 O -0.411 6.411 10 N -0.353 5.353 11 C 0.007 3.993 12 C -0.121 4.121 13 N -0.176 5.176 14 C -0.126 4.126 15 C 0.237 3.763 16 O -0.442 6.442 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.139 4.139 27 C -0.090 4.090 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.244 0.756 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.803 4.889 9.998 29.022 hybrid contribution -0.451 -2.381 -1.621 2.915 sum -27.254 2.508 8.377 28.623 Atomic orbital electron populations 1.20711 0.90219 1.03212 1.02477 1.20889 0.97544 0.94099 1.01575 1.22664 0.90026 0.97432 0.96110 1.67691 1.08327 1.31087 1.11597 1.22629 1.00326 0.87065 0.94849 1.20272 0.94227 0.95431 1.01397 1.20600 1.02193 0.96080 0.95068 1.20483 0.77689 0.80447 0.91116 1.90740 1.51131 1.52992 1.46250 1.45554 1.54978 1.26560 1.08216 1.22371 0.97752 0.94806 0.84391 1.24296 0.94205 0.93400 1.00190 1.68441 1.03223 1.02881 1.43040 1.22503 0.94683 0.99882 0.95492 1.19575 0.85794 0.86459 0.84464 1.90565 1.81953 1.30947 1.40745 1.42213 1.09493 1.33236 1.38083 1.19421 0.82117 1.18202 1.23650 0.86305 1.25039 0.95107 0.98116 0.97888 1.69617 1.00990 1.41745 1.39703 0.86671 0.78668 0.82404 0.81628 1.19657 1.20139 1.19522 1.24409 0.91359 0.95981 1.02113 1.21303 0.93226 0.98233 0.96195 0.90947 0.91137 0.91340 0.82981 0.82857 0.87606 0.87117 0.75650 0.87844 0.90672 0.88345 0.88999 0.92560 0.79744 0.91591 0.88910 0.90149 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 36.00 0.36 -0.22 16 2 C -0.14 -1.17 5.90 -104.48 -0.62 -1.78 16 3 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 4 N -0.48 -5.71 10.36 -13.26 -0.14 -5.85 16 5 C 0.11 1.19 10.86 -17.55 -0.19 1.00 16 6 C -0.11 -1.06 4.39 -104.48 -0.46 -1.51 16 7 C -0.10 -0.73 5.86 -29.03 -0.17 -0.90 16 8 C 0.52 5.61 7.82 -10.99 -0.09 5.52 16 9 O -0.53 -8.09 15.63 5.55 0.09 -8.00 16 10 N -0.70 -7.00 5.36 -54.95 -0.29 -7.30 16 11 C 0.11 1.29 4.43 -69.63 -0.31 0.98 16 12 C 0.01 0.13 6.56 -2.77 -0.02 0.11 16 13 N -0.45 -6.62 5.95 -239.91 -1.43 -8.05 16 14 C 0.01 0.10 5.31 -4.98 -0.03 0.08 16 15 C 0.45 10.10 7.59 -10.99 -0.08 10.02 16 16 O -0.56 -14.84 15.12 5.55 0.08 -14.75 16 17 N -0.59 -13.95 5.09 -10.97 -0.06 -14.00 16 18 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 16 19 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 22 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 26 C -0.01 -0.09 7.73 -2.77 -0.02 -0.11 16 27 C -0.06 -0.55 9.55 -39.28 -0.37 -0.93 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.41 3.33 8.75 -40.82 -0.36 2.97 16 36 H 0.10 1.22 7.46 -51.93 -0.39 0.84 16 37 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 38 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 41 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 45 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -36.93 382.49 -8.73 -45.66 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.38 Total: 11.65 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.43 Total: 5.26 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -1.14 Total: -60.11 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.93 -8.73 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713832075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.045 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds