Wall clock time and date at job start Tue Mar 31 2020 17:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38217 * 120.41979 * 2 1 4 4 N 1.31861 * 120.76646 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.72144 * 359.70699 * 4 3 2 6 6 C 1.38180 * 120.76567 * 0.58143 * 5 4 3 7 7 C 1.50709 * 120.41768 * 179.70095 * 6 5 4 8 8 C 1.50700 * 109.47279 * 269.72463 * 7 6 5 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00069 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00179 * 180.02562 * 10 8 7 12 12 C 1.53932 * 113.73412 * 108.27085 * 11 10 8 13 13 N 1.47959 * 86.18045 * 90.64001 * 12 11 10 14 14 C 1.46902 * 110.99905 * 137.58303 * 13 12 11 15 15 C 1.50699 * 109.47319 * 70.64321 * 14 13 12 16 16 O 1.21291 * 119.99712 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00368 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00565 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99891 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00760 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00603 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99597 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47398 * 89.99619 * 22 20 18 24 24 H 1.48496 * 109.47234 * 210.00303 * 22 20 18 25 25 H 1.48504 * 109.47141 * 329.99883 * 22 20 18 26 26 C 1.47957 * 90.76368 * 24.69138 * 13 12 11 27 27 C 1.38637 * 120.41854 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47624 * 269.97630 * 1 2 3 29 29 H 1.09001 * 109.47146 * 29.98296 * 1 2 3 30 30 H 1.09005 * 109.47499 * 149.97627 * 1 2 3 31 31 H 1.07998 * 119.62006 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.61764 * 180.31012 * 5 4 3 33 33 H 1.08996 * 109.46693 * 149.72475 * 7 6 5 34 34 H 1.08998 * 109.47043 * 29.72845 * 7 6 5 35 35 H 0.97003 * 119.99993 * 0.02562 * 10 8 7 36 36 H 1.09000 * 113.00735 * 336.63911 * 11 10 8 37 37 H 1.09004 * 113.75969 * 204.95796 * 12 11 10 38 38 H 1.08999 * 113.76302 * 336.32252 * 12 11 10 39 39 H 1.09007 * 109.46697 * 190.64055 * 14 13 12 40 40 H 1.09001 * 109.46915 * 310.63777 * 14 13 12 41 41 H 0.97011 * 119.99660 * 359.97438 * 17 15 14 42 42 H 0.97001 * 120.00504 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.75975 * 220.99328 * 26 13 12 44 44 H 1.08998 * 113.76273 * 89.62912 * 26 13 12 45 45 H 1.08003 * 120.78945 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5947 -1.1471 -0.0011 7 6 4.4027 -2.4193 -0.0019 8 6 4.6713 -2.8430 -1.4229 9 8 4.2488 -2.1771 -2.3443 10 7 5.3811 -3.9617 -1.6698 11 6 5.6428 -4.3733 -3.0513 12 6 7.1065 -4.1823 -3.4879 13 7 7.3262 -5.5647 -3.0084 14 6 8.1708 -6.3186 -3.9445 15 6 9.5823 -5.7945 -3.8814 16 8 9.8575 -4.8823 -3.1308 17 7 10.5389 -6.3393 -4.6589 18 6 11.8228 -5.8622 -4.6019 19 1 12.0679 -5.0500 -3.9335 20 6 12.8092 -6.4242 -5.4031 21 7 14.0400 -5.9672 -5.3481 22 14 12.3855 -7.8296 -6.5585 23 1 11.9763 -7.2808 -7.8763 24 1 13.5742 -8.7023 -6.7332 25 1 11.2691 -8.6230 -5.9845 26 6 5.8956 -5.8833 -3.2106 27 6 2.2089 -1.1955 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6674 2.1276 0.0004 32 1 5.3046 0.1285 0.0092 33 1 3.8464 -3.2032 0.5120 34 1 5.3489 -2.2491 0.5116 35 1 5.7187 -4.4944 -0.9328 36 1 4.9178 -3.9726 -3.7597 37 1 7.2320 -4.0657 -4.5644 38 1 7.6418 -3.4275 -2.9120 39 1 8.1626 -7.3741 -3.6720 40 1 7.7847 -6.2018 -4.9571 41 1 10.3189 -7.0691 -5.2589 42 1 14.7286 -6.3598 -5.9071 43 1 5.4632 -6.4875 -2.4130 44 1 5.6668 -6.2643 -4.2059 45 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713832075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:34 Heat of formation + Delta-G solvation = -26.990513 kcal Electronic energy + Delta-G solvation = -26995.870605 eV Core-core repulsion = 23013.276615 eV Total energy + Delta-G solvation = -3982.593990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75847 -41.24199 -40.21541 -39.34488 -36.01831 -34.93370 -34.55386 -34.48664 -33.76610 -31.31198 -29.08880 -28.15154 -27.30385 -27.05288 -25.00969 -24.18792 -22.86240 -21.40116 -21.27111 -20.81624 -20.20305 -18.26897 -17.90728 -17.81842 -17.66890 -17.28710 -16.88992 -16.55759 -16.36249 -15.90770 -15.54004 -15.27329 -15.21944 -14.83483 -14.80593 -14.41721 -14.29958 -14.15638 -13.96069 -13.74662 -13.59355 -13.51364 -13.24297 -13.12799 -13.05064 -12.69431 -12.43189 -12.32264 -12.30101 -11.98423 -11.89515 -11.51484 -11.11332 -10.51029 -10.42412 -10.40290 -10.26115 -10.10553 -9.73616 -9.69531 -8.42383 -6.03546 0.12489 0.34663 1.28980 1.34816 1.43883 1.59693 1.95286 2.13964 2.22142 2.68345 2.86301 3.11764 3.14980 3.46752 3.53865 3.70264 3.78418 3.85226 3.95399 4.06901 4.07903 4.13630 4.24627 4.27268 4.41451 4.45682 4.50434 4.52854 4.63199 4.66504 4.78339 4.82510 4.84768 4.90003 4.94428 5.20521 5.25827 5.33105 5.33339 5.51567 5.54218 5.80559 5.87800 5.98421 6.57176 6.58238 6.87301 7.02610 7.25341 7.38615 7.96296 8.75377 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.001857 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.916311 B =15072.812450 C =15656.501634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C 0.076 3.924 4 N -0.513 5.513 5 C 0.079 3.921 6 C -0.116 4.116 7 C -0.091 4.091 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.694 5.694 11 C 0.123 3.877 12 C -0.002 4.002 13 N -0.475 5.475 14 C 0.018 3.982 15 C 0.448 3.552 16 O -0.611 6.611 17 N -0.592 5.592 18 C -0.329 4.329 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.275 1.275 25 H -0.229 1.229 26 C 0.012 3.988 27 C -0.073 4.073 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.171 0.829 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.419 0.581 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.398 -0.516 8.976 32.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.140 4.140 3 C -0.081 4.081 4 N -0.221 5.221 5 C -0.077 4.077 6 C -0.119 4.119 7 C -0.131 4.131 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.346 5.346 11 C 0.016 3.984 12 C -0.132 4.132 13 N -0.198 5.198 14 C -0.113 4.113 15 C 0.236 3.764 16 O -0.495 6.495 17 N -0.234 5.234 18 C -0.458 4.458 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.152 1.152 26 C -0.117 4.117 27 C -0.098 4.098 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.188 0.812 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -30.529 1.237 9.404 31.968 hybrid contribution 0.702 -1.099 -1.326 1.860 sum -29.827 0.138 8.078 30.902 Atomic orbital electron populations 1.20775 0.87836 1.04043 1.03672 1.21266 0.99268 0.93548 0.99936 1.23082 0.89593 0.99020 0.96406 1.67629 1.09703 1.31996 1.12775 1.22785 1.00598 0.87899 0.96414 1.20478 0.95027 0.95543 1.00833 1.20659 1.03271 0.96133 0.93029 1.21053 0.76725 0.79786 0.92012 1.90722 1.53153 1.54328 1.47962 1.45531 1.54399 1.26480 1.08144 1.22237 0.95050 0.96152 0.85002 1.24252 0.96501 0.93084 0.99405 1.68428 1.05879 1.02419 1.43111 1.22485 0.89880 1.01085 0.97885 1.20954 0.88155 0.84962 0.82296 1.90550 1.83421 1.33075 1.42456 1.42042 1.08012 1.34119 1.39220 1.18982 0.85074 1.17885 1.23880 0.92952 1.26148 0.94249 1.01533 0.99579 1.69807 1.02687 1.43928 1.41182 0.85343 0.79718 0.77715 0.78589 1.18253 1.20041 1.15190 1.24489 0.87666 0.94949 1.04584 1.21693 0.93065 0.99448 0.95624 0.89419 0.90316 0.90511 0.81204 0.83056 0.83925 0.85636 0.74376 0.88036 0.91068 0.92426 0.85765 0.89285 0.77467 0.91160 0.86258 0.87542 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.04 71.23 0.72 -0.17 16 2 C -0.14 -2.16 5.90 -19.78 -0.12 -2.28 16 3 C 0.08 1.47 10.86 84.68 0.92 2.39 16 4 N -0.51 -12.79 10.36 -195.85 -2.03 -14.82 16 5 C 0.08 1.83 10.86 84.67 0.92 2.75 16 6 C -0.12 -2.15 4.39 -19.77 -0.09 -2.24 16 7 C -0.09 -1.19 5.86 29.10 0.17 -1.02 16 8 C 0.52 10.69 7.82 87.66 0.69 11.38 16 9 O -0.58 -17.61 15.63 -3.04 -0.05 -17.65 16 10 N -0.69 -12.70 5.36 -446.16 -2.39 -15.09 16 11 C 0.12 2.57 4.43 46.56 0.21 2.78 16 12 C 0.00 -0.06 6.56 86.40 0.57 0.51 16 13 N -0.48 -12.78 5.95 -912.93 -5.43 -18.21 16 14 C 0.02 0.52 5.31 85.56 0.45 0.97 16 15 C 0.45 20.00 7.59 87.66 0.67 20.67 16 16 O -0.61 -33.84 15.12 -3.06 -0.05 -33.89 16 17 N -0.59 -27.71 5.09 -307.00 -1.56 -29.27 16 18 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 19 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 20 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 21 N -0.94 -56.72 13.96 21.66 0.30 -56.42 16 22 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 26 C 0.01 0.19 7.73 86.41 0.67 0.85 16 27 C -0.07 -1.15 9.55 22.47 0.21 -0.94 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.08 0.54 8.10 -2.38 -0.02 0.52 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.14 0.81 8.10 -2.39 -0.02 0.79 16 34 H 0.13 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.42 5.85 8.75 -92.71 -0.81 5.04 16 36 H 0.10 2.24 7.46 -2.39 -0.02 2.22 16 37 H 0.07 2.10 7.78 -2.38 -0.02 2.08 16 38 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 39 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.09 2.02 7.69 -2.39 -0.02 2.00 16 41 H 0.39 14.92 5.76 -92.70 -0.53 14.38 16 42 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.25 7.79 -2.39 -0.02 1.23 16 45 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -89.77 382.49 -2.37 -92.14 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.37 Total: 36.10 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 7.30 Total: 16.69 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -11.11 Total: -133.81 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.09 Total: -51.54 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -89.77 -2.37 -92.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713832075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.154 kcal (2) G-P(sol) polarization free energy of solvation -89.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds