Wall clock time and date at job start Tue Mar 31 2020 16:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29817 * 126.33211 * 2 1 4 4 O 1.41324 * 109.72600 * 180.02562 * 3 2 1 5 5 C 1.34839 * 109.42368 * 359.97438 * 4 3 2 6 6 N 1.32443 * 133.09954 * 180.02562 * 5 4 3 7 7 C 1.31560 * 122.03094 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17451 * 180.02562 * 7 6 5 9 9 C 1.38602 * 121.65300 * 359.67364 * 7 6 5 10 10 C 1.39442 * 119.19673 * 0.61899 * 9 7 6 11 11 C 1.48004 * 121.09806 * 179.69390 * 10 9 7 12 12 O 1.21536 * 119.99715 * 234.46689 * 11 10 9 13 13 N 1.34773 * 120.00327 * 54.46611 * 11 10 9 14 14 C 1.46501 * 119.99906 * 355.46585 * 13 11 10 15 15 C 1.46497 * 120.00138 * 175.47327 * 13 11 10 16 16 H 1.09004 * 109.47559 * 359.97438 * 15 13 11 17 17 C 1.53007 * 109.46934 * 239.99602 * 15 13 11 18 18 C 1.53002 * 109.47705 * 119.99814 * 15 13 11 19 19 N 1.46502 * 109.46686 * 305.00212 * 18 15 13 20 20 C 1.36940 * 119.99690 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99499 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00395 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47093 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47170 * 209.99772 * 24 22 20 27 27 H 1.48498 * 109.46694 * 329.99865 * 24 22 20 28 28 C 1.40525 * 106.85706 * 0.02562 * 5 4 3 29 29 H 1.09005 * 109.46762 * 263.69732 * 1 2 3 30 30 H 1.08994 * 109.47388 * 23.69955 * 1 2 3 31 31 H 1.09002 * 109.46683 * 143.70945 * 1 2 3 32 32 H 1.09005 * 109.46894 * 89.99766 * 8 7 6 33 33 H 1.08998 * 109.47122 * 210.00110 * 8 7 6 34 34 H 1.09001 * 109.47017 * 330.00365 * 8 7 6 35 35 H 1.08000 * 120.39873 * 180.31574 * 9 7 6 36 36 H 1.08995 * 109.47496 * 275.15730 * 14 13 11 37 37 H 1.09000 * 109.46760 * 35.15970 * 14 13 11 38 38 H 1.09001 * 109.47045 * 155.15252 * 14 13 11 39 39 H 1.08992 * 109.47440 * 300.00053 * 17 15 13 40 40 H 1.09007 * 109.46568 * 60.00136 * 17 15 13 41 41 H 1.08999 * 109.46920 * 179.97438 * 17 15 13 42 42 H 1.09007 * 109.46618 * 64.99819 * 18 15 13 43 43 H 1.08990 * 109.47339 * 184.99446 * 18 15 13 44 44 H 0.96991 * 120.00244 * 359.97438 * 19 18 15 45 45 H 0.97001 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6419 -0.0006 5 6 3.6967 -0.7048 -0.0004 6 7 4.7071 -1.5612 -0.0003 7 6 4.5183 -2.8631 -0.0006 8 6 5.7150 -3.7790 0.0001 9 6 3.2463 -3.4136 0.0057 10 6 2.1385 -2.5667 -0.0007 11 6 0.7615 -3.1092 -0.0011 12 8 -0.0262 -2.7668 -0.8609 13 7 0.3811 -3.9829 0.9519 14 6 1.3570 -4.4721 1.9289 15 6 -1.0083 -4.4436 1.0109 16 1 -1.5809 -3.9749 0.2105 17 6 -1.6153 -4.0619 2.3626 18 6 -1.0492 -5.9640 0.8447 19 7 -0.3616 -6.3385 -0.3936 20 6 -0.2701 -7.6563 -0.7543 21 1 -0.7045 -8.4196 -0.1258 22 6 0.3809 -8.0110 -1.9279 23 7 0.4692 -9.2778 -2.2743 24 14 1.1316 -6.6908 -3.0154 25 1 2.5370 -6.4487 -2.6016 26 1 1.1025 -7.1396 -4.4306 27 1 0.3518 -5.4344 -2.8784 28 6 2.3735 -1.1780 -0.0003 29 1 -0.3633 -0.1128 1.0215 30 1 -0.3634 0.9409 -0.4130 31 1 -0.3633 -0.8284 -0.6083 32 1 6.0029 -3.9999 1.0280 33 1 5.4631 -4.7065 -0.5141 34 1 6.5448 -3.2929 -0.5131 35 1 3.1147 -4.4856 0.0104 36 1 1.8966 -5.3213 1.5096 37 1 2.0620 -3.6759 2.1681 38 1 0.8386 -4.7830 2.8360 39 1 -1.0429 -4.5304 3.1631 40 1 -1.5863 -2.9787 2.4809 41 1 -2.6492 -4.4043 2.4062 42 1 -0.5527 -6.4357 1.6928 43 1 -2.0860 -6.2969 0.7996 44 1 0.0288 -5.6530 -0.9579 45 1 0.9245 -9.5258 -3.0942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715357389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:08 Heat of formation + Delta-G solvation = 69.430086 kcal Electronic energy + Delta-G solvation = -29806.026987 eV Core-core repulsion = 25827.614108 eV Total energy + Delta-G solvation = -3978.412879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35965 -40.33552 -39.06862 -36.86663 -35.02444 -34.40684 -33.07279 -32.38167 -31.59863 -30.53998 -29.03234 -27.87172 -27.14425 -26.09843 -24.96057 -23.39332 -22.31272 -21.62240 -20.56122 -19.21575 -18.42007 -17.82184 -17.56361 -17.47878 -16.70485 -16.42947 -15.53853 -15.03380 -14.67725 -14.40205 -14.29556 -14.10737 -14.01145 -13.75288 -13.67287 -13.47073 -13.04058 -12.97046 -12.82878 -12.66345 -12.61930 -12.50353 -12.43765 -12.28965 -12.15257 -11.95074 -11.62235 -11.19663 -11.06923 -10.93038 -10.71075 -10.49942 -10.19960 -9.84272 -9.66831 -9.65704 -9.18770 -8.98815 -8.69754 -7.31543 -5.84279 -3.19898 -0.06330 0.60747 1.62094 1.80837 2.38559 2.71488 3.16852 3.28046 3.40002 3.40947 3.42856 3.73671 3.98118 4.14702 4.28097 4.52880 4.65480 4.78380 4.88194 4.96012 5.02218 5.11093 5.15465 5.23008 5.29252 5.29849 5.35367 5.37683 5.45107 5.46024 5.52093 5.64596 5.67085 5.69968 5.78923 5.85680 5.86054 6.03538 6.06299 6.19983 6.45894 6.61946 6.77941 7.18189 7.32204 7.90262 7.91198 8.34687 9.13685 9.86359 10.05866 11.33847 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004831 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.969666 B = 5794.778433 C = 6906.576346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.158 3.842 3 N -0.279 5.279 4 O -0.083 6.083 5 C 0.298 3.702 6 N -0.474 5.474 7 C 0.207 3.793 8 C -0.110 4.110 9 C -0.174 4.174 10 C 0.014 3.986 11 C 0.555 3.445 12 O -0.516 6.516 13 N -0.584 5.584 14 C 0.071 3.929 15 C 0.120 3.880 16 H 0.104 0.896 17 C -0.156 4.156 18 C 0.149 3.851 19 N -0.752 5.752 20 C -0.245 4.245 21 H 0.091 0.909 22 C 0.010 3.990 23 N -0.932 5.932 24 Si 0.870 3.130 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.272 1.272 28 C -0.221 4.221 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.040 0.960 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 14.590 11.284 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.022 4.022 3 N -0.027 5.027 4 O -0.086 6.086 5 C 0.114 3.886 6 N -0.195 5.195 7 C 0.064 3.936 8 C -0.167 4.167 9 C -0.195 4.195 10 C 0.001 3.999 11 C 0.341 3.659 12 O -0.393 6.393 13 N -0.316 5.316 14 C -0.072 4.072 15 C 0.018 3.982 16 H 0.122 0.878 17 C -0.215 4.215 18 C 0.021 3.979 19 N -0.398 5.398 20 C -0.375 4.375 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.579 5.579 24 Si 0.700 3.300 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.198 1.198 28 C -0.228 4.228 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.390 16.273 10.846 20.043 hybrid contribution -0.144 -0.276 -0.935 0.986 sum 4.246 15.997 9.911 19.291 Atomic orbital electron populations 1.20912 0.83807 1.06646 1.05110 1.24512 0.98493 0.88819 0.90421 1.80080 0.84068 1.17161 1.21402 1.89242 1.23330 1.14865 1.81190 1.20269 0.89055 0.86425 0.92800 1.66359 1.32879 1.02358 1.17900 1.21405 0.95045 0.88107 0.89029 1.20926 0.94117 0.97336 1.04344 1.22320 0.91351 1.02210 1.03635 1.19895 0.94965 0.91140 0.93871 1.18058 0.86173 0.79570 0.82083 1.90743 1.52807 1.59739 1.35999 1.47712 1.11208 1.42778 1.29908 1.21976 0.92420 0.99960 0.92829 1.21615 0.80552 0.96805 0.99222 0.87756 1.22074 1.01541 1.01451 0.96395 1.20990 0.96832 0.89875 0.90223 1.42654 1.68117 1.05518 1.23550 1.19029 1.30500 0.82758 1.05183 0.89137 1.24613 1.00738 0.95501 0.97754 1.69691 1.48083 1.14600 1.25546 0.86751 0.79566 0.82474 0.81224 1.21041 1.21489 1.19823 1.21148 0.93499 0.94052 1.14113 0.88904 0.89352 0.86218 0.88904 0.89098 0.89430 0.82090 0.90963 0.91765 0.89996 0.91989 0.92464 0.90779 0.95071 0.94266 0.80463 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.92 36.01 0.36 -0.79 16 2 C 0.16 2.14 7.46 -80.23 -0.60 1.54 16 3 N -0.28 -4.08 12.81 34.84 0.45 -3.63 16 4 O -0.08 -1.30 12.06 7.64 0.09 -1.20 16 5 C 0.30 4.48 8.64 -16.43 -0.14 4.34 16 6 N -0.47 -6.64 10.25 -9.24 -0.09 -6.73 16 7 C 0.21 2.47 6.78 -82.57 -0.56 1.91 16 8 C -0.11 -0.91 10.14 36.01 0.37 -0.54 16 9 C -0.17 -2.22 7.71 -39.00 -0.30 -2.52 16 10 C 0.01 0.20 4.73 -104.46 -0.49 -0.29 16 11 C 0.55 8.53 6.40 -12.26 -0.08 8.45 16 12 O -0.52 -9.26 13.59 5.33 0.07 -9.19 16 13 N -0.58 -7.92 2.24 -174.99 -0.39 -8.31 16 14 C 0.07 0.76 8.33 59.85 0.50 1.26 16 15 C 0.12 1.66 2.79 -67.93 -0.19 1.47 16 16 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 17 C -0.16 -1.52 9.18 37.16 0.34 -1.18 16 18 C 0.15 2.56 5.56 -4.04 -0.02 2.54 16 19 N -0.75 -16.99 5.24 -59.91 -0.31 -17.31 16 20 C -0.24 -6.65 10.47 -15.06 -0.16 -6.81 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 22 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 23 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 24 Si 0.87 22.00 27.74 -169.99 -4.71 17.28 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.27 -6.90 6.52 56.52 0.37 -6.54 16 28 C -0.22 -3.22 6.19 -104.84 -0.65 -3.87 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 1.51 5.03 -51.93 -0.26 1.25 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.16 1.93 6.96 -52.49 -0.37 1.56 16 36 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 37 H 0.06 0.59 6.48 -51.93 -0.34 0.25 16 38 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 39 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 40 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.52 7.84 -51.92 -0.41 0.11 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.36 8.41 4.93 -40.82 -0.20 8.21 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -34.18 368.49 -6.26 -40.44 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.96 Total: 5.18 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.72 Total: 5.70 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.42 Total: -63.78 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.16 Total: -10.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.18 -6.26 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715357389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.873 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds