Wall clock time and date at job start Tue Mar 31 2020 16:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29817 * 126.33211 * 2 1 4 4 O 1.41324 * 109.72600 * 180.02562 * 3 2 1 5 5 C 1.34839 * 109.42368 * 359.97438 * 4 3 2 6 6 N 1.32443 * 133.09954 * 180.02562 * 5 4 3 7 7 C 1.31560 * 122.03094 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17451 * 180.02562 * 7 6 5 9 9 C 1.38602 * 121.65300 * 359.67364 * 7 6 5 10 10 C 1.39442 * 119.19673 * 0.61899 * 9 7 6 11 11 C 1.48004 * 121.09806 * 179.69390 * 10 9 7 12 12 O 1.21536 * 119.99715 * 234.46689 * 11 10 9 13 13 N 1.34773 * 120.00327 * 54.46611 * 11 10 9 14 14 C 1.46501 * 119.99906 * 355.46585 * 13 11 10 15 15 C 1.46497 * 120.00138 * 175.47327 * 13 11 10 16 16 H 1.09004 * 109.47559 * 359.97438 * 15 13 11 17 17 C 1.53007 * 109.46934 * 239.99602 * 15 13 11 18 18 C 1.53002 * 109.47705 * 119.99814 * 15 13 11 19 19 N 1.46502 * 109.46686 * 305.00212 * 18 15 13 20 20 C 1.36940 * 119.99690 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99499 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00395 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47093 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47170 * 209.99772 * 24 22 20 27 27 H 1.48498 * 109.46694 * 329.99865 * 24 22 20 28 28 C 1.40525 * 106.85706 * 0.02562 * 5 4 3 29 29 H 1.09005 * 109.46762 * 263.69732 * 1 2 3 30 30 H 1.08994 * 109.47388 * 23.69955 * 1 2 3 31 31 H 1.09002 * 109.46683 * 143.70945 * 1 2 3 32 32 H 1.09005 * 109.46894 * 89.99766 * 8 7 6 33 33 H 1.08998 * 109.47122 * 210.00110 * 8 7 6 34 34 H 1.09001 * 109.47017 * 330.00365 * 8 7 6 35 35 H 1.08000 * 120.39873 * 180.31574 * 9 7 6 36 36 H 1.08995 * 109.47496 * 275.15730 * 14 13 11 37 37 H 1.09000 * 109.46760 * 35.15970 * 14 13 11 38 38 H 1.09001 * 109.47045 * 155.15252 * 14 13 11 39 39 H 1.08992 * 109.47440 * 300.00053 * 17 15 13 40 40 H 1.09007 * 109.46568 * 60.00136 * 17 15 13 41 41 H 1.08999 * 109.46920 * 179.97438 * 17 15 13 42 42 H 1.09007 * 109.46618 * 64.99819 * 18 15 13 43 43 H 1.08990 * 109.47339 * 184.99446 * 18 15 13 44 44 H 0.96991 * 120.00244 * 359.97438 * 19 18 15 45 45 H 0.97001 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6419 -0.0006 5 6 3.6967 -0.7048 -0.0004 6 7 4.7071 -1.5612 -0.0003 7 6 4.5183 -2.8631 -0.0006 8 6 5.7150 -3.7790 0.0001 9 6 3.2463 -3.4136 0.0057 10 6 2.1385 -2.5667 -0.0007 11 6 0.7615 -3.1092 -0.0011 12 8 -0.0262 -2.7668 -0.8609 13 7 0.3811 -3.9829 0.9519 14 6 1.3570 -4.4721 1.9289 15 6 -1.0083 -4.4436 1.0109 16 1 -1.5809 -3.9749 0.2105 17 6 -1.6153 -4.0619 2.3626 18 6 -1.0492 -5.9640 0.8447 19 7 -0.3616 -6.3385 -0.3936 20 6 -0.2701 -7.6563 -0.7543 21 1 -0.7045 -8.4196 -0.1258 22 6 0.3809 -8.0110 -1.9279 23 7 0.4692 -9.2778 -2.2743 24 14 1.1316 -6.6908 -3.0154 25 1 2.5370 -6.4487 -2.6016 26 1 1.1025 -7.1396 -4.4306 27 1 0.3518 -5.4344 -2.8784 28 6 2.3735 -1.1780 -0.0003 29 1 -0.3633 -0.1128 1.0215 30 1 -0.3634 0.9409 -0.4130 31 1 -0.3633 -0.8284 -0.6083 32 1 6.0029 -3.9999 1.0280 33 1 5.4631 -4.7065 -0.5141 34 1 6.5448 -3.2929 -0.5131 35 1 3.1147 -4.4856 0.0104 36 1 1.8966 -5.3213 1.5096 37 1 2.0620 -3.6759 2.1681 38 1 0.8386 -4.7830 2.8360 39 1 -1.0429 -4.5304 3.1631 40 1 -1.5863 -2.9787 2.4809 41 1 -2.6492 -4.4043 2.4062 42 1 -0.5527 -6.4357 1.6928 43 1 -2.0860 -6.2969 0.7996 44 1 0.0288 -5.6530 -0.9579 45 1 0.9245 -9.5258 -3.0942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715357389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:07 Heat of formation + Delta-G solvation = 44.989759 kcal Electronic energy + Delta-G solvation = -29807.086799 eV Core-core repulsion = 25827.614108 eV Total energy + Delta-G solvation = -3979.472691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.40710 -41.45062 -40.09992 -38.11659 -36.09644 -36.01530 -34.33146 -33.36903 -33.13529 -31.91966 -29.95216 -28.74334 -28.08692 -27.58716 -26.03885 -24.45655 -23.97595 -22.76746 -21.69267 -20.41233 -19.54783 -19.44145 -18.75611 -18.55515 -17.77419 -17.51921 -16.77822 -16.64000 -15.94358 -15.78446 -15.29448 -15.24803 -15.07409 -14.83796 -14.65914 -14.58881 -14.42698 -14.19126 -13.90713 -13.79804 -13.78906 -13.62100 -13.26294 -13.17783 -13.09546 -13.04487 -12.87842 -12.59901 -12.44826 -12.26426 -12.17119 -11.86385 -11.76478 -11.63191 -11.01254 -10.89067 -10.73013 -10.18890 -9.78706 -9.29412 -8.04427 -5.35279 -1.08662 -0.43979 0.59741 0.75742 1.26285 1.27108 1.36337 1.40379 1.65295 2.14375 2.41606 2.42909 2.73739 2.95601 3.16037 3.27950 3.31836 3.59512 3.70336 3.88960 3.93775 4.04106 4.17387 4.24037 4.28017 4.36633 4.42132 4.45671 4.50946 4.59976 4.73252 4.78186 4.78393 4.82111 4.85445 4.92757 4.98447 5.03230 5.13571 5.24947 5.33303 5.48009 5.72590 5.76668 6.11248 6.20153 6.32111 6.79136 7.06926 7.84477 8.00981 9.17160 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004831 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.969666 B = 5794.778433 C = 6906.576346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.162 3.838 3 N -0.293 5.293 4 O -0.103 6.103 5 C 0.284 3.716 6 N -0.486 5.486 7 C 0.214 3.786 8 C -0.109 4.109 9 C -0.172 4.172 10 C 0.007 3.993 11 C 0.552 3.448 12 O -0.549 6.549 13 N -0.581 5.581 14 C 0.065 3.935 15 C 0.127 3.873 16 H 0.085 0.915 17 C -0.146 4.146 18 C 0.143 3.857 19 N -0.756 5.756 20 C -0.223 4.223 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.978 5.978 24 Si 0.928 3.072 25 H -0.262 1.262 26 H -0.299 1.299 27 H -0.276 1.276 28 C -0.234 4.234 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.360 0.640 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 15.387 12.997 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 N -0.043 5.043 4 O -0.105 6.105 5 C 0.101 3.899 6 N -0.208 5.208 7 C 0.071 3.929 8 C -0.166 4.166 9 C -0.193 4.193 10 C -0.006 4.006 11 C 0.338 3.662 12 O -0.428 6.428 13 N -0.312 5.312 14 C -0.077 4.077 15 C 0.024 3.976 16 H 0.103 0.897 17 C -0.204 4.204 18 C 0.017 3.983 19 N -0.402 5.402 20 C -0.354 4.354 21 H 0.085 0.915 22 C -0.242 4.242 23 N -0.629 5.629 24 Si 0.756 3.244 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.202 1.202 28 C -0.241 4.241 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.188 0.812 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.193 0.807 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.844 17.092 12.625 21.795 hybrid contribution -0.343 -0.603 -1.377 1.541 sum 4.501 16.489 11.248 20.462 Atomic orbital electron populations 1.20989 0.81919 1.06817 1.06287 1.24937 0.99512 0.88261 0.89119 1.80062 0.83707 1.17627 1.22895 1.89192 1.24199 1.15450 1.81609 1.20486 0.89716 0.86367 0.93310 1.66468 1.32792 1.03056 1.18522 1.22011 0.96053 0.87742 0.87088 1.21102 0.92634 0.96738 1.06136 1.22504 0.91273 1.02466 1.03028 1.19885 0.94862 0.91189 0.94639 1.18245 0.86273 0.79733 0.81914 1.90732 1.53715 1.61018 1.37352 1.47825 1.11601 1.41997 1.29770 1.22189 0.92430 1.00193 0.92860 1.21518 0.80954 0.93920 1.01186 0.89685 1.22019 1.02006 1.02463 0.93933 1.21245 0.96182 0.92669 0.88218 1.42716 1.68523 1.03631 1.25307 1.19050 1.28055 0.84253 1.04037 0.91527 1.25219 1.02429 0.97076 0.99477 1.69836 1.50193 1.16601 1.26272 0.85821 0.79913 0.79700 0.78920 1.18709 1.22613 1.20173 1.21258 0.93530 0.94469 1.14844 0.86617 0.87672 0.87832 0.86379 0.88084 0.88909 0.81167 0.91767 0.90183 0.87668 0.90318 0.91192 0.89707 0.93499 0.94271 0.80702 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.92 71.24 0.71 -1.35 16 2 C 0.16 4.26 7.46 44.94 0.34 4.60 16 3 N -0.29 -8.47 12.81 -43.67 -0.56 -9.03 16 4 O -0.10 -3.23 12.06 29.75 0.36 -2.87 16 5 C 0.28 8.42 8.64 85.16 0.74 9.15 16 6 N -0.49 -13.06 10.25 -296.37 -3.04 -16.10 16 7 C 0.21 4.64 6.78 42.69 0.29 4.93 16 8 C -0.11 -1.48 10.14 71.24 0.72 -0.75 16 9 C -0.17 -4.02 7.71 22.65 0.17 -3.84 16 10 C 0.01 0.19 4.73 -19.76 -0.09 0.10 16 11 C 0.55 16.15 6.40 86.83 0.56 16.71 16 12 O -0.55 -19.34 13.59 -3.83 -0.05 -19.40 16 13 N -0.58 -14.41 2.24 -825.82 -1.85 -16.26 16 14 C 0.06 1.18 8.33 127.77 1.06 2.25 16 15 C 0.13 3.21 2.79 44.99 0.13 3.34 16 16 H 0.08 2.53 6.91 -2.38 -0.02 2.52 16 17 C -0.15 -2.33 9.18 71.98 0.66 -1.66 16 18 C 0.14 4.66 5.56 86.38 0.48 5.14 16 19 N -0.76 -33.25 5.24 -343.45 -1.80 -35.05 16 20 C -0.22 -12.05 10.47 84.03 0.88 -11.17 16 21 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 22 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 23 N -0.98 -60.80 13.97 21.65 0.30 -60.49 16 24 Si 0.93 45.44 27.74 68.60 1.90 47.34 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 27 H -0.28 -13.51 6.52 99.48 0.65 -12.86 16 28 C -0.23 -6.63 6.19 -20.00 -0.12 -6.75 16 29 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 2.54 5.03 -2.39 -0.01 2.53 16 32 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.17 3.63 6.96 -2.91 -0.02 3.61 16 36 H 0.06 1.31 7.38 -2.39 -0.02 1.29 16 37 H 0.08 1.23 6.48 -2.39 -0.02 1.21 16 38 H 0.10 1.42 6.44 -2.39 -0.02 1.41 16 39 H 0.08 1.01 6.66 -2.39 -0.02 1.00 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.41 7.84 -2.38 -0.02 1.40 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.36 16.24 4.93 -92.71 -0.46 15.78 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.14 368.49 2.77 -72.37 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.52 Total: 21.19 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 6.98 Total: 18.29 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -6.95 Total: -136.93 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.31 Total: -22.27 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -75.14 2.77 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715357389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.365 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds