Wall clock time and date at job start Tue Mar 31 2020 16:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31694 * 119.71981 * 2 1 4 4 C 1.31923 * 121.88624 * 179.97438 * 3 2 1 5 5 C 1.38357 * 121.07512 * 359.97438 * 4 3 2 6 6 C 1.38358 * 119.30472 * 0.02562 * 5 4 3 7 7 C 1.39526 * 119.71499 * 180.23058 * 2 1 3 8 8 C 1.47835 * 120.56282 * 0.05326 * 7 2 1 9 9 O 1.21556 * 119.99764 * 6.10785 * 8 7 2 10 10 N 1.34780 * 120.00167 * 186.11336 * 8 7 2 11 11 C 1.46501 * 119.99851 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46541 * 179.97438 * 11 10 8 13 13 C 1.31004 * 119.99531 * 128.28593 * 12 11 10 14 14 C 1.50703 * 120.00132 * 6.83894 * 13 12 11 15 15 N 1.46894 * 109.47362 * 128.27587 * 14 13 12 16 16 C 1.46903 * 110.99975 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47167 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99939 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00042 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00245 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00130 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99867 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46968 * 90.00488 * 24 22 20 26 26 H 1.48501 * 109.47230 * 210.00336 * 24 22 20 27 27 H 1.48498 * 109.47260 * 330.00445 * 24 22 20 28 28 H 1.08998 * 109.47035 * 98.40861 * 1 2 3 29 29 H 1.09007 * 109.47328 * 218.41050 * 1 2 3 30 30 H 1.08998 * 109.47527 * 338.40788 * 1 2 3 31 31 H 1.07995 * 119.46180 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.34724 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.85765 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99931 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47058 * 299.99932 * 11 10 8 36 36 H 1.08999 * 109.46658 * 60.00333 * 11 10 8 37 37 H 1.07993 * 120.00405 * 308.28767 * 12 11 10 38 38 H 1.07997 * 119.99842 * 186.83208 * 13 12 11 39 39 H 1.09005 * 109.46950 * 248.27925 * 14 13 12 40 40 H 1.09002 * 109.47131 * 8.27562 * 14 13 12 41 41 H 1.00897 * 110.99760 * 56.04948 * 15 14 13 42 42 H 1.09000 * 109.47253 * 300.00297 * 16 15 14 43 43 H 1.09007 * 109.46881 * 60.00113 * 16 15 14 44 44 H 0.96994 * 120.00298 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99965 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0364 0.0016 6 6 3.5987 -1.1914 0.0016 7 6 2.1986 -1.2118 -0.0049 8 6 1.4656 -2.4956 -0.0112 9 8 0.2553 -2.5039 -0.1243 10 7 2.1393 -3.6568 0.1084 11 6 1.4128 -4.9290 0.1027 12 6 2.3906 -6.0664 0.2489 13 6 2.2023 -6.9776 1.1712 14 6 0.9323 -6.9772 1.9825 15 7 0.3243 -8.3137 1.9410 16 6 -0.9184 -8.3513 2.7235 17 6 -1.5116 -9.7351 2.6581 18 8 -0.9543 -10.6044 2.0218 19 7 -2.6620 -10.0064 3.3058 20 6 -3.2014 -11.2655 3.2467 21 1 -2.7047 -12.0397 2.6808 22 6 -4.3876 -11.5451 3.9140 23 7 -4.9044 -12.7521 3.8578 24 14 -5.2471 -10.2058 4.8922 25 1 -6.2020 -9.4854 4.0121 26 1 -5.9845 -10.8173 6.0269 27 1 -4.2382 -9.2499 5.4152 28 1 -0.3633 -0.1503 -1.0166 29 1 -0.3634 -0.8053 0.6385 30 1 -0.3634 0.9555 0.3782 31 1 3.9734 2.1533 0.0001 32 1 5.3152 0.0909 0.0024 33 1 4.1660 -2.1103 0.0020 34 1 3.1050 -3.6502 0.1991 35 1 0.7063 -4.9477 0.9325 36 1 0.8717 -5.0341 -0.8377 37 1 3.2466 -6.1303 -0.4064 38 1 2.9570 -7.7290 1.3499 39 1 1.1611 -6.7140 3.0153 40 1 0.2362 -6.2483 1.5675 41 1 0.9738 -9.0165 2.2607 42 1 -0.7021 -8.0978 3.7613 43 1 -1.6276 -7.6318 2.3140 44 1 -3.1079 -9.3112 3.8144 45 1 -5.7327 -12.9472 4.3233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715864929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:34 Heat of formation + Delta-G solvation = -1.013128 kcal Electronic energy + Delta-G solvation = -26270.275475 eV Core-core repulsion = 22288.807949 eV Total energy + Delta-G solvation = -3981.467526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21509 -39.44919 -38.53693 -37.16670 -35.34063 -34.05457 -33.64076 -33.05151 -32.51315 -31.64893 -28.66720 -27.87347 -26.38077 -24.90876 -24.51772 -23.09626 -22.59409 -21.18817 -19.71004 -19.26307 -18.40162 -17.80024 -17.32925 -16.74753 -16.43700 -16.03181 -15.80447 -15.60873 -15.33499 -14.99908 -14.84905 -14.36802 -14.31419 -13.85277 -13.78803 -13.65375 -13.40593 -13.07936 -12.88908 -12.77455 -12.74690 -12.54352 -12.30099 -12.26374 -11.84296 -11.71114 -11.15603 -10.95629 -10.59055 -10.47117 -10.42527 -9.97616 -9.96539 -9.71909 -9.57232 -9.50557 -9.21118 -8.60304 -8.19582 -8.14460 -6.30881 -3.82406 0.14646 0.64380 1.70042 2.44333 2.85364 3.03117 3.08139 3.15937 3.31239 3.73656 3.79504 4.09984 4.10297 4.14561 4.19967 4.23551 4.44421 4.51902 4.72270 4.87154 4.88362 5.04321 5.05564 5.20038 5.21684 5.23092 5.41346 5.44353 5.46493 5.49106 5.61251 5.62821 5.66162 5.77428 5.79292 5.92738 5.99929 6.16861 6.25782 6.47735 7.01671 7.03177 7.40886 7.51695 7.58326 7.76694 8.14452 8.59806 8.94997 9.42513 9.82454 10.82177 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.001730 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.477742 B =16181.823770 C =17313.642094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.191 3.809 3 N -0.491 5.491 4 C 0.129 3.871 5 C -0.190 4.190 6 C -0.039 4.039 7 C -0.192 4.192 8 C 0.560 3.440 9 O -0.523 6.523 10 N -0.720 5.720 11 C 0.141 3.859 12 C -0.185 4.185 13 C -0.109 4.109 14 C 0.069 3.931 15 N -0.663 5.663 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.398 0.602 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.371 0.629 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.270 28.315 -5.244 35.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.053 3.947 3 N -0.200 5.200 4 C -0.029 4.029 5 C -0.210 4.210 6 C -0.065 4.065 7 C -0.197 4.197 8 C 0.347 3.653 9 O -0.400 6.400 10 N -0.372 5.372 11 C 0.019 3.981 12 C -0.205 4.205 13 C -0.128 4.128 14 C -0.060 4.060 15 N -0.295 5.295 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.233 0.767 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.171 0.829 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.767 28.408 -6.288 34.623 hybrid contribution 0.773 0.095 1.733 1.900 sum 19.540 28.503 -4.555 34.857 Atomic orbital electron populations 1.21047 0.87323 1.03852 1.04469 1.21610 0.97781 0.86505 0.88783 1.67703 1.10000 1.28691 1.13628 1.23049 0.89450 0.98907 0.91488 1.22101 1.01918 0.93042 1.03895 1.21770 0.93077 0.99007 0.92679 1.20792 0.94398 0.95041 1.09468 1.17999 0.87127 0.83296 0.76894 1.90787 1.13375 1.86983 1.48875 1.45904 1.10937 1.05684 1.74699 1.20555 0.93834 0.80166 1.03559 1.22656 1.01188 0.97303 0.99311 1.22853 0.96979 0.98015 0.94955 1.21297 0.94115 0.92755 0.97800 1.60097 1.06675 1.04135 1.58615 1.21734 0.93202 0.97675 0.95971 1.19675 0.83174 0.89319 0.84282 1.90565 1.61867 1.47934 1.44298 1.42202 1.22125 1.12203 1.46413 1.19436 1.05963 0.87235 1.30809 0.86271 1.25038 0.96713 0.96570 0.97814 1.69621 1.20444 1.19233 1.42790 0.86669 0.80359 0.81738 0.80600 1.19532 1.20185 1.19540 0.89647 0.88035 0.91098 0.82123 0.84013 0.84391 0.76656 0.89756 0.90280 0.86344 0.86407 0.94375 0.89598 0.82923 0.93672 0.89320 0.79660 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.78 36.00 0.32 -0.71 16 2 C 0.19 1.82 6.82 -82.17 -0.56 1.26 16 3 N -0.49 -4.47 10.26 -9.15 -0.09 -4.57 16 4 C 0.13 0.78 11.17 -17.47 -0.20 0.58 16 5 C -0.19 -0.86 10.10 -39.49 -0.40 -1.26 16 6 C -0.04 -0.21 9.63 -38.87 -0.37 -0.58 16 7 C -0.19 -1.60 5.89 -104.82 -0.62 -2.22 16 8 C 0.56 5.42 7.71 -12.33 -0.10 5.33 16 9 O -0.52 -6.70 13.42 5.32 0.07 -6.62 16 10 N -0.72 -5.30 5.50 -62.43 -0.34 -5.64 16 11 C 0.14 1.23 5.74 -5.19 -0.03 1.20 16 12 C -0.19 -1.44 9.63 -36.03 -0.35 -1.78 16 13 C -0.11 -0.99 9.77 -36.03 -0.35 -1.34 16 14 C 0.07 0.76 5.75 -4.98 -0.03 0.73 16 15 N -0.66 -10.03 6.12 -116.34 -0.71 -10.74 16 16 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 17 C 0.45 10.25 7.82 -10.99 -0.09 10.17 16 18 O -0.56 -15.22 15.78 5.55 0.09 -15.13 16 19 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 20 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 24 Si 0.88 19.49 27.74 -169.99 -4.71 14.77 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.05 6.01 -51.93 -0.31 0.74 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 33 H 0.14 0.32 6.56 -52.49 -0.34 -0.02 16 34 H 0.40 1.78 6.61 -40.82 -0.27 1.51 16 35 H 0.08 0.83 5.33 -51.93 -0.28 0.55 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.95 5.33 -51.93 -0.28 0.67 16 41 H 0.35 5.40 8.42 -39.29 -0.33 5.07 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.33 8.14 -51.92 -0.42 0.90 16 44 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -35.98 380.03 -8.14 -44.11 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.83 Total: 13.05 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -3.05 Total: 4.31 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.43 Total: -60.21 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.16 Total: -21.76 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.98 -8.14 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715864929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.100 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds