Wall clock time and date at job start Tue Mar 31 2020 16:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31694 * 119.71981 * 2 1 4 4 C 1.31923 * 121.88624 * 179.97438 * 3 2 1 5 5 C 1.38357 * 121.07512 * 359.97438 * 4 3 2 6 6 C 1.38358 * 119.30472 * 0.02562 * 5 4 3 7 7 C 1.39526 * 119.71499 * 180.23058 * 2 1 3 8 8 C 1.47835 * 120.56282 * 0.05326 * 7 2 1 9 9 O 1.21556 * 119.99764 * 6.10785 * 8 7 2 10 10 N 1.34780 * 120.00167 * 186.11336 * 8 7 2 11 11 C 1.46501 * 119.99851 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46541 * 179.97438 * 11 10 8 13 13 C 1.31004 * 119.99531 * 128.28593 * 12 11 10 14 14 C 1.50703 * 120.00132 * 6.83894 * 13 12 11 15 15 N 1.46894 * 109.47362 * 128.27587 * 14 13 12 16 16 C 1.46903 * 110.99975 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47167 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99939 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00042 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00245 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00130 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99867 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46968 * 90.00488 * 24 22 20 26 26 H 1.48501 * 109.47230 * 210.00336 * 24 22 20 27 27 H 1.48498 * 109.47260 * 330.00445 * 24 22 20 28 28 H 1.08998 * 109.47035 * 98.40861 * 1 2 3 29 29 H 1.09007 * 109.47328 * 218.41050 * 1 2 3 30 30 H 1.08998 * 109.47527 * 338.40788 * 1 2 3 31 31 H 1.07995 * 119.46180 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.34724 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.85765 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99931 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47058 * 299.99932 * 11 10 8 36 36 H 1.08999 * 109.46658 * 60.00333 * 11 10 8 37 37 H 1.07993 * 120.00405 * 308.28767 * 12 11 10 38 38 H 1.07997 * 119.99842 * 186.83208 * 13 12 11 39 39 H 1.09005 * 109.46950 * 248.27925 * 14 13 12 40 40 H 1.09002 * 109.47131 * 8.27562 * 14 13 12 41 41 H 1.00897 * 110.99760 * 56.04948 * 15 14 13 42 42 H 1.09000 * 109.47253 * 300.00297 * 16 15 14 43 43 H 1.09007 * 109.46881 * 60.00113 * 16 15 14 44 44 H 0.96994 * 120.00298 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99965 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0364 0.0016 6 6 3.5987 -1.1914 0.0016 7 6 2.1986 -1.2118 -0.0049 8 6 1.4656 -2.4956 -0.0112 9 8 0.2553 -2.5039 -0.1243 10 7 2.1393 -3.6568 0.1084 11 6 1.4128 -4.9290 0.1027 12 6 2.3906 -6.0664 0.2489 13 6 2.2023 -6.9776 1.1712 14 6 0.9323 -6.9772 1.9825 15 7 0.3243 -8.3137 1.9410 16 6 -0.9184 -8.3513 2.7235 17 6 -1.5116 -9.7351 2.6581 18 8 -0.9543 -10.6044 2.0218 19 7 -2.6620 -10.0064 3.3058 20 6 -3.2014 -11.2655 3.2467 21 1 -2.7047 -12.0397 2.6808 22 6 -4.3876 -11.5451 3.9140 23 7 -4.9044 -12.7521 3.8578 24 14 -5.2471 -10.2058 4.8922 25 1 -6.2020 -9.4854 4.0121 26 1 -5.9845 -10.8173 6.0269 27 1 -4.2382 -9.2499 5.4152 28 1 -0.3633 -0.1503 -1.0166 29 1 -0.3634 -0.8053 0.6385 30 1 -0.3634 0.9555 0.3782 31 1 3.9734 2.1533 0.0001 32 1 5.3152 0.0909 0.0024 33 1 4.1660 -2.1103 0.0020 34 1 3.1050 -3.6502 0.1991 35 1 0.7063 -4.9477 0.9325 36 1 0.8717 -5.0341 -0.8377 37 1 3.2466 -6.1303 -0.4064 38 1 2.9570 -7.7290 1.3499 39 1 1.1611 -6.7140 3.0153 40 1 0.2362 -6.2483 1.5675 41 1 0.9738 -9.0165 2.2607 42 1 -0.7021 -8.0978 3.7613 43 1 -1.6276 -7.6318 2.3140 44 1 -3.1079 -9.3112 3.8144 45 1 -5.7327 -12.9472 4.3233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715864929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:33 Heat of formation + Delta-G solvation = -30.553951 kcal Electronic energy + Delta-G solvation = -26271.556461 eV Core-core repulsion = 22288.807949 eV Total energy + Delta-G solvation = -3982.748512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78805 -40.34272 -40.06820 -38.08609 -36.37509 -35.86047 -34.44632 -33.76617 -33.64734 -33.15706 -29.61112 -28.80540 -27.34595 -26.25545 -25.16816 -24.39295 -23.11898 -21.86069 -21.34746 -20.51585 -19.94993 -18.58339 -17.98947 -17.64432 -17.22887 -17.12722 -16.85669 -16.62692 -16.44532 -16.12888 -15.84719 -15.43498 -15.28472 -14.99465 -14.92684 -14.48598 -14.39318 -14.24661 -14.09988 -13.93832 -13.60222 -13.38741 -13.29807 -13.21781 -13.00306 -12.90849 -12.75048 -12.42108 -11.98589 -11.68816 -11.52758 -11.11000 -10.96606 -10.56054 -10.46349 -10.37468 -10.25999 -10.11031 -9.85898 -9.27443 -8.42315 -6.03330 -0.37285 0.19397 1.02813 1.29623 1.35291 1.43742 1.79921 1.93709 2.21012 2.22197 2.78162 2.78542 3.13913 3.30692 3.52366 3.60611 3.67583 3.77682 3.86076 4.05481 4.08399 4.12462 4.28140 4.40772 4.47226 4.48096 4.50848 4.59957 4.66809 4.69721 4.72765 4.77539 4.96694 5.00653 5.09563 5.15032 5.36767 5.50932 5.58817 5.64044 5.79767 5.89351 6.01776 6.37082 6.45101 6.58466 6.86600 6.90400 7.12796 7.38254 7.94411 8.75222 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.001730 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.477742 B =16181.823770 C =17313.642094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.165 3.835 3 N -0.519 5.519 4 C 0.119 3.881 5 C -0.177 4.177 6 C -0.034 4.034 7 C -0.207 4.207 8 C 0.557 3.443 9 O -0.564 6.564 10 N -0.704 5.704 11 C 0.141 3.859 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.071 3.929 15 N -0.682 5.682 16 C 0.060 3.940 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.231 1.231 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.189 0.811 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.347 0.653 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.636 31.594 -4.185 39.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.027 3.973 3 N -0.229 5.229 4 C -0.038 4.038 5 C -0.196 4.196 6 C -0.060 4.060 7 C -0.212 4.212 8 C 0.344 3.656 9 O -0.444 6.444 10 N -0.357 5.357 11 C 0.018 3.982 12 C -0.184 4.184 13 C -0.144 4.144 14 C -0.056 4.056 15 N -0.315 5.315 16 C -0.072 4.072 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.155 1.155 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.206 0.794 32 H 0.198 0.802 33 H 0.189 0.811 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.166 0.834 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.191 31.712 -5.228 38.497 hybrid contribution 0.200 -0.942 1.289 1.609 sum 21.391 30.769 -3.938 37.681 Atomic orbital electron populations 1.20903 0.88354 1.03252 1.03596 1.21596 0.97676 0.87467 0.90520 1.67669 1.11807 1.28679 1.14780 1.23656 0.88624 1.01020 0.90471 1.22533 1.03688 0.91916 1.01478 1.22180 0.91759 1.00958 0.91144 1.20735 0.95821 0.93712 1.10958 1.18300 0.86788 0.84230 0.76237 1.90767 1.15197 1.87585 1.50863 1.45717 1.11677 1.04608 1.73685 1.20461 0.94177 0.81144 1.02415 1.22752 1.01143 0.95979 0.98483 1.22844 0.96690 0.99198 0.95711 1.21331 0.94833 0.90321 0.99160 1.60092 1.06498 1.06201 1.58729 1.21645 0.94050 0.93013 0.98480 1.20960 0.82058 0.91430 0.81947 1.90540 1.63013 1.50388 1.45871 1.42035 1.22813 1.11001 1.47378 1.19022 1.07008 0.88218 1.31719 0.92596 1.26104 0.96864 0.99758 0.98541 1.69800 1.21258 1.22277 1.44020 0.85375 0.79469 0.78290 0.78458 1.18297 1.19888 1.15457 0.90535 0.89554 0.90883 0.79377 0.80184 0.81071 0.74696 0.90855 0.91677 0.83856 0.85462 0.92918 0.89636 0.83416 0.90354 0.87128 0.77476 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 8.78 71.23 0.63 -1.47 16 2 C 0.17 3.16 6.82 42.89 0.29 3.46 16 3 N -0.52 -9.09 10.26 -182.85 -1.88 -10.97 16 4 C 0.12 1.14 11.17 84.71 0.95 2.09 16 5 C -0.18 -0.93 10.10 22.33 0.23 -0.70 16 6 C -0.03 -0.26 9.63 22.73 0.22 -0.04 16 7 C -0.21 -3.24 5.89 -19.99 -0.12 -3.35 16 8 C 0.56 10.46 7.71 86.78 0.67 11.13 16 9 O -0.56 -14.93 13.42 -3.89 -0.05 -14.98 16 10 N -0.70 -8.98 5.50 -469.70 -2.58 -11.57 16 11 C 0.14 2.24 5.74 85.63 0.49 2.73 16 12 C -0.16 -2.10 9.63 25.64 0.25 -1.85 16 13 C -0.13 -1.98 9.77 25.64 0.25 -1.73 16 14 C 0.07 1.42 5.75 85.56 0.49 1.91 16 15 N -0.68 -19.66 6.12 -521.97 -3.19 -22.85 16 16 C 0.06 1.86 6.17 85.56 0.53 2.38 16 17 C 0.45 20.44 7.82 87.66 0.69 21.13 16 18 O -0.61 -34.29 15.78 -3.07 -0.05 -34.34 16 19 N -0.59 -28.20 5.09 -306.98 -1.56 -29.76 16 20 C -0.33 -19.58 10.16 84.04 0.85 -18.73 16 21 H 0.06 3.94 7.39 -2.91 -0.02 3.91 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.93 -56.63 13.96 21.66 0.30 -56.33 16 24 Si 0.96 39.23 27.74 68.60 1.90 41.14 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.96 6.01 -2.38 -0.01 1.95 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 33 H 0.17 0.00 6.56 -2.91 -0.02 -0.02 16 34 H 0.41 2.31 6.61 -92.71 -0.61 1.70 16 35 H 0.07 1.36 5.33 -2.39 -0.01 1.35 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.09 1.72 5.33 -2.39 -0.01 1.71 16 41 H 0.35 10.40 8.42 -89.70 -0.76 9.64 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 44 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -86.14 380.03 -1.14 -87.28 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.90 Total: 35.74 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.87 Total: 16.65 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -8.91 Total: -131.49 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.10 Total: -49.32 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.14 kcal Total: -86.14 -1.14 -87.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715864929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.726 kcal (2) G-P(sol) polarization free energy of solvation -86.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds