Wall clock time and date at job start Tue Mar 31 2020 16:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29818 * 126.33374 * 2 1 4 4 O 1.41325 * 109.72751 * 179.97438 * 3 2 1 5 5 C 1.34842 * 109.42181 * 359.97438 * 4 3 2 6 6 N 1.32443 * 133.09892 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.02613 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.16766 * 180.02562 * 7 6 5 9 9 C 1.38590 * 121.65730 * 359.65892 * 7 6 5 10 10 C 1.39439 * 119.19947 * 0.62810 * 9 7 6 11 11 C 1.48006 * 121.10390 * 179.70585 * 10 9 7 12 12 O 1.21529 * 120.00352 * 144.49006 * 11 10 9 13 13 N 1.34776 * 119.99748 * 324.76590 * 11 10 9 14 14 C 1.46502 * 119.99875 * 179.72494 * 13 11 10 15 15 H 1.08995 * 109.47173 * 325.00118 * 14 13 11 16 16 C 1.53003 * 109.47253 * 84.99766 * 14 13 11 17 17 C 1.53001 * 109.47303 * 204.99891 * 14 13 11 18 18 C 1.53009 * 109.46682 * 64.99870 * 17 14 13 19 19 N 1.46500 * 109.46730 * 179.97438 * 18 17 14 20 20 C 1.36937 * 119.99848 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99820 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99891 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99813 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46972 * 90.00249 * 24 22 20 26 26 H 1.48500 * 109.46741 * 210.00368 * 24 22 20 27 27 H 1.48499 * 109.46795 * 329.99886 * 24 22 20 28 28 C 1.40523 * 106.85501 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.47021 * 264.25968 * 1 2 3 30 30 H 1.09003 * 109.47132 * 24.25461 * 1 2 3 31 31 H 1.08991 * 109.47580 * 144.25879 * 1 2 3 32 32 H 1.09005 * 109.47139 * 90.00005 * 8 7 6 33 33 H 1.09006 * 109.46987 * 210.00039 * 8 7 6 34 34 H 1.08996 * 109.47504 * 329.99814 * 8 7 6 35 35 H 1.08001 * 120.40224 * 180.33166 * 9 7 6 36 36 H 0.96998 * 120.00700 * 359.72360 * 13 11 10 37 37 H 1.08993 * 109.47385 * 300.00403 * 16 14 13 38 38 H 1.09001 * 109.46764 * 60.00525 * 16 14 13 39 39 H 1.08994 * 109.47054 * 179.97438 * 16 14 13 40 40 H 1.08994 * 109.47143 * 184.99813 * 17 14 13 41 41 H 1.08995 * 109.47068 * 305.00335 * 17 14 13 42 42 H 1.08994 * 109.47285 * 299.99856 * 18 17 14 43 43 H 1.08995 * 109.46989 * 60.00417 * 18 17 14 44 44 H 0.97001 * 120.00185 * 0.02562 * 19 18 17 45 45 H 0.97005 * 120.00014 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6419 0.0006 5 6 3.6967 -0.7049 0.0015 6 7 4.7070 -1.5612 0.0019 7 6 4.5181 -2.8632 0.0024 8 6 5.7149 -3.7791 0.0034 9 6 3.2462 -3.4136 0.0095 10 6 2.1384 -2.5668 0.0031 11 6 0.7613 -3.1092 0.0038 12 8 -0.1191 -2.5314 0.6104 13 7 0.4849 -4.2469 -0.6638 14 6 -0.8769 -4.7870 -0.6582 15 1 -1.3405 -4.5935 0.3091 16 6 -1.6972 -4.1139 -1.7605 17 6 -0.8282 -6.2957 -0.9078 18 6 -0.1153 -6.9828 0.2587 19 7 -0.0692 -8.4275 0.0200 20 6 0.5247 -9.2542 0.9360 21 1 0.9595 -8.8411 1.8341 22 6 0.5688 -10.6231 0.7095 23 7 1.1402 -11.4176 1.5897 24 14 -0.1826 -11.3375 -0.8443 25 1 0.8434 -11.3780 -1.9170 26 1 -0.6683 -12.7140 -0.5715 27 1 -1.3205 -10.4883 -1.2794 28 6 2.3734 -1.1779 0.0010 29 1 -0.3633 -0.1028 1.0226 30 1 -0.3633 0.9370 -0.4222 31 1 -0.3634 -0.8340 -0.6002 32 1 6.0029 -3.9994 1.0314 33 1 5.4628 -4.7069 -0.5102 34 1 6.5445 -3.2934 -0.5102 35 1 3.1145 -4.4856 0.0152 36 1 1.1875 -4.7081 -1.1481 37 1 -1.7319 -3.0391 -1.5827 38 1 -1.2336 -4.3074 -2.7278 39 1 -2.7102 -4.5161 -1.7565 40 1 -1.8436 -6.6830 -0.9920 41 1 -0.2860 -6.4937 -1.8323 42 1 0.9000 -6.5956 0.3429 43 1 -0.6576 -6.7849 1.1832 44 1 -0.4595 -8.7985 -0.7869 45 1 1.1707 -12.3742 1.4316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716161375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:30 Heat of formation + Delta-G solvation = 51.171047 kcal Electronic energy + Delta-G solvation = -28241.145614 eV Core-core repulsion = 24261.940963 eV Total energy + Delta-G solvation = -3979.204650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43906 -40.29470 -39.17578 -36.92684 -35.07634 -34.66996 -33.24773 -32.48142 -31.82708 -30.82676 -29.07174 -28.42746 -27.93837 -25.29936 -24.05034 -23.35809 -21.88917 -21.40675 -20.93666 -20.34112 -18.49344 -18.05263 -17.75586 -17.50681 -16.80827 -16.30763 -15.68923 -14.95193 -14.66202 -14.54792 -14.46448 -14.36703 -14.11131 -13.83282 -13.74532 -13.60957 -13.49938 -13.15981 -13.08071 -12.71517 -12.70539 -12.57348 -12.39252 -12.20642 -11.74176 -11.65992 -11.37984 -11.34512 -11.05174 -10.87280 -10.66746 -10.60383 -10.23113 -9.93295 -9.84566 -9.67895 -9.33479 -9.31323 -8.98324 -7.33463 -5.84928 -3.21607 -0.20363 0.46371 1.52047 1.72721 2.35346 2.67746 3.12426 3.29828 3.31848 3.34206 3.38805 3.66148 3.98473 4.02251 4.22102 4.50806 4.55905 4.59637 4.74334 4.88665 4.96024 5.08019 5.10569 5.21868 5.24854 5.27256 5.30760 5.38564 5.40049 5.44954 5.50356 5.58044 5.63122 5.75542 5.77128 5.79755 5.93116 5.98959 6.05385 6.20490 6.55232 6.60756 6.70128 7.13829 7.22264 7.78580 7.90312 8.33661 9.12254 9.84393 10.03397 11.33301 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002916 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.624687 B = 9599.337805 C =11052.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.159 3.841 3 N -0.280 5.280 4 O -0.083 6.083 5 C 0.297 3.703 6 N -0.472 5.472 7 C 0.207 3.793 8 C -0.111 4.111 9 C -0.173 4.173 10 C 0.005 3.995 11 C 0.556 3.444 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.145 3.855 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.141 4.141 18 C 0.158 3.842 19 N -0.757 5.757 20 C -0.248 4.248 21 H 0.089 0.911 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.215 4.215 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 19.962 -8.047 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 N -0.028 5.028 4 O -0.086 6.086 5 C 0.114 3.886 6 N -0.193 5.193 7 C 0.064 3.936 8 C -0.168 4.168 9 C -0.194 4.194 10 C -0.008 4.008 11 C 0.341 3.659 12 O -0.393 6.393 13 N -0.356 5.356 14 C 0.041 3.959 15 H 0.114 0.886 16 C -0.220 4.220 17 C -0.179 4.179 18 C 0.031 3.969 19 N -0.403 5.403 20 C -0.378 4.378 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.222 4.222 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.179 0.821 36 H 0.240 0.760 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.547 22.050 -7.401 23.310 hybrid contribution -0.899 -1.968 -1.203 2.475 sum 0.649 20.082 -8.605 21.857 Atomic orbital electron populations 1.20631 0.83321 1.04079 1.05740 1.24585 0.98670 0.88690 0.90216 1.80109 0.84003 1.17175 1.21563 1.89259 1.23448 1.14834 1.81093 1.20313 0.89090 0.86524 0.92715 1.66366 1.32998 1.02443 1.17530 1.21439 0.95190 0.88099 0.88853 1.20940 0.94101 0.97185 1.04591 1.22266 0.91499 1.01939 1.03727 1.19953 0.94729 0.91159 0.94957 1.17970 0.86853 0.81231 0.79849 1.90799 1.46935 1.58777 1.42812 1.46074 1.12802 1.24687 1.52054 1.21077 0.81094 0.92989 1.00766 0.88646 1.22178 1.00308 1.01095 0.98467 1.22142 1.02827 0.92492 1.00426 1.20613 0.97117 0.84469 0.94740 1.42709 1.71071 1.01951 1.24520 1.19040 1.29517 0.88353 1.00848 0.89274 1.24693 1.00532 0.95912 0.97950 1.69702 1.48946 1.03695 1.35686 0.86532 0.79177 0.78646 0.84034 1.21060 1.21693 1.20349 1.21188 0.93375 0.94253 1.13391 0.87776 0.90156 0.88456 0.88829 0.89001 0.89472 0.82096 0.75983 0.92224 0.92397 0.91192 0.89952 0.91234 0.95674 0.95507 0.80670 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 8.65 36.00 0.31 -0.41 16 2 C 0.16 1.87 7.43 -80.24 -0.60 1.27 16 3 N -0.28 -3.71 12.81 34.84 0.45 -3.26 16 4 O -0.08 -1.19 12.06 7.64 0.09 -1.10 16 5 C 0.30 3.96 8.64 -16.43 -0.14 3.81 16 6 N -0.47 -5.80 10.25 -9.24 -0.09 -5.90 16 7 C 0.21 1.99 6.78 -82.58 -0.56 1.43 16 8 C -0.11 -0.71 10.14 36.01 0.37 -0.35 16 9 C -0.17 -1.59 9.05 -39.00 -0.35 -1.94 16 10 C 0.00 0.05 5.84 -104.45 -0.61 -0.56 16 11 C 0.56 6.13 7.08 -12.26 -0.09 6.04 16 12 O -0.52 -6.66 12.83 5.34 0.07 -6.59 16 13 N -0.70 -6.71 4.46 -54.70 -0.24 -6.95 16 14 C 0.14 1.47 2.57 -67.93 -0.17 1.30 16 15 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 16 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 17 C -0.14 -1.69 4.87 -26.73 -0.13 -1.82 16 18 C 0.16 2.66 6.15 -4.04 -0.02 2.64 16 19 N -0.76 -16.64 5.41 -59.91 -0.32 -16.97 16 20 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 21 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 24 Si 0.89 21.10 27.74 -169.99 -4.71 16.38 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 28 C -0.22 -2.64 6.12 -104.84 -0.64 -3.28 16 29 H 0.10 0.95 7.88 -51.93 -0.41 0.54 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.89 6.24 -51.93 -0.32 0.57 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.16 1.13 7.71 -52.49 -0.40 0.73 16 36 H 0.40 3.20 7.87 -40.82 -0.32 2.88 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.41 7.75 -51.93 -0.40 0.01 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 7.68 5.53 -40.82 -0.23 7.46 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -33.73 377.32 -7.15 -40.88 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.30 Total: 5.22 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.54 Total: 0.29 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.56 Total: -60.77 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.16 Total: -7.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.73 -7.15 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716161375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.052 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds