Wall clock time and date at job start Tue Mar 31 2020 16:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29818 * 126.33374 * 2 1 4 4 O 1.41325 * 109.72751 * 179.97438 * 3 2 1 5 5 C 1.34842 * 109.42181 * 359.97438 * 4 3 2 6 6 N 1.32443 * 133.09892 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.02613 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.16766 * 180.02562 * 7 6 5 9 9 C 1.38590 * 121.65730 * 359.65892 * 7 6 5 10 10 C 1.39439 * 119.19947 * 0.62810 * 9 7 6 11 11 C 1.48006 * 121.10390 * 179.70585 * 10 9 7 12 12 O 1.21529 * 120.00352 * 144.49006 * 11 10 9 13 13 N 1.34776 * 119.99748 * 324.76590 * 11 10 9 14 14 C 1.46502 * 119.99875 * 179.72494 * 13 11 10 15 15 H 1.08995 * 109.47173 * 325.00118 * 14 13 11 16 16 C 1.53003 * 109.47253 * 84.99766 * 14 13 11 17 17 C 1.53001 * 109.47303 * 204.99891 * 14 13 11 18 18 C 1.53009 * 109.46682 * 64.99870 * 17 14 13 19 19 N 1.46500 * 109.46730 * 179.97438 * 18 17 14 20 20 C 1.36937 * 119.99848 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99820 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99891 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99813 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46972 * 90.00249 * 24 22 20 26 26 H 1.48500 * 109.46741 * 210.00368 * 24 22 20 27 27 H 1.48499 * 109.46795 * 329.99886 * 24 22 20 28 28 C 1.40523 * 106.85501 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.47021 * 264.25968 * 1 2 3 30 30 H 1.09003 * 109.47132 * 24.25461 * 1 2 3 31 31 H 1.08991 * 109.47580 * 144.25879 * 1 2 3 32 32 H 1.09005 * 109.47139 * 90.00005 * 8 7 6 33 33 H 1.09006 * 109.46987 * 210.00039 * 8 7 6 34 34 H 1.08996 * 109.47504 * 329.99814 * 8 7 6 35 35 H 1.08001 * 120.40224 * 180.33166 * 9 7 6 36 36 H 0.96998 * 120.00700 * 359.72360 * 13 11 10 37 37 H 1.08993 * 109.47385 * 300.00403 * 16 14 13 38 38 H 1.09001 * 109.46764 * 60.00525 * 16 14 13 39 39 H 1.08994 * 109.47054 * 179.97438 * 16 14 13 40 40 H 1.08994 * 109.47143 * 184.99813 * 17 14 13 41 41 H 1.08995 * 109.47068 * 305.00335 * 17 14 13 42 42 H 1.08994 * 109.47285 * 299.99856 * 18 17 14 43 43 H 1.08995 * 109.46989 * 60.00417 * 18 17 14 44 44 H 0.97001 * 120.00185 * 0.02562 * 19 18 17 45 45 H 0.97005 * 120.00014 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6419 0.0006 5 6 3.6967 -0.7049 0.0015 6 7 4.7070 -1.5612 0.0019 7 6 4.5181 -2.8632 0.0024 8 6 5.7149 -3.7791 0.0034 9 6 3.2462 -3.4136 0.0095 10 6 2.1384 -2.5668 0.0031 11 6 0.7613 -3.1092 0.0038 12 8 -0.1191 -2.5314 0.6104 13 7 0.4849 -4.2469 -0.6638 14 6 -0.8769 -4.7870 -0.6582 15 1 -1.3405 -4.5935 0.3091 16 6 -1.6972 -4.1139 -1.7605 17 6 -0.8282 -6.2957 -0.9078 18 6 -0.1153 -6.9828 0.2587 19 7 -0.0692 -8.4275 0.0200 20 6 0.5247 -9.2542 0.9360 21 1 0.9595 -8.8411 1.8341 22 6 0.5688 -10.6231 0.7095 23 7 1.1402 -11.4176 1.5897 24 14 -0.1826 -11.3375 -0.8443 25 1 0.8434 -11.3780 -1.9170 26 1 -0.6683 -12.7140 -0.5715 27 1 -1.3205 -10.4883 -1.2794 28 6 2.3734 -1.1779 0.0010 29 1 -0.3633 -0.1028 1.0226 30 1 -0.3633 0.9370 -0.4222 31 1 -0.3634 -0.8340 -0.6002 32 1 6.0029 -3.9994 1.0314 33 1 5.4628 -4.7069 -0.5102 34 1 6.5445 -3.2934 -0.5102 35 1 3.1145 -4.4856 0.0152 36 1 1.1875 -4.7081 -1.1481 37 1 -1.7319 -3.0391 -1.5827 38 1 -1.2336 -4.3074 -2.7278 39 1 -2.7102 -4.5161 -1.7565 40 1 -1.8436 -6.6830 -0.9920 41 1 -0.2860 -6.4937 -1.8323 42 1 0.9000 -6.5956 0.3429 43 1 -0.6576 -6.7849 1.1832 44 1 -0.4595 -8.7985 -0.7869 45 1 1.1707 -12.3742 1.4316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716161375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:29 Heat of formation + Delta-G solvation = 26.060367 kcal Electronic energy + Delta-G solvation = -28242.234494 eV Core-core repulsion = 24261.940963 eV Total energy + Delta-G solvation = -3980.293531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.33040 -41.17227 -40.02538 -38.00346 -36.27308 -35.90511 -34.21540 -33.54201 -33.19658 -31.95376 -29.87842 -29.68850 -28.66092 -26.17723 -25.52374 -24.28464 -23.12762 -22.59060 -21.84684 -21.21577 -19.70011 -19.33965 -18.79208 -18.51908 -17.73934 -17.19384 -16.70166 -16.37713 -15.95146 -15.61395 -15.41835 -15.28950 -15.14734 -14.94348 -14.75424 -14.55899 -14.39571 -14.29217 -14.02542 -13.83010 -13.63936 -13.29275 -13.12456 -13.08764 -12.93941 -12.90428 -12.57872 -12.34416 -12.23043 -12.18310 -11.94287 -11.79989 -11.71424 -11.51140 -10.94102 -10.81617 -10.72256 -10.16320 -10.14273 -9.26398 -7.99593 -5.33652 -1.05250 -0.39180 0.63530 0.81726 1.42017 1.46233 1.49585 1.53845 1.83721 2.28273 2.49971 2.52311 2.81545 3.15088 3.24912 3.32340 3.41648 3.51431 3.77204 3.97957 4.05383 4.10885 4.17802 4.28745 4.33149 4.47881 4.55689 4.57834 4.60086 4.64823 4.76797 4.81385 4.84376 4.85900 4.92964 5.03887 5.09724 5.21063 5.30358 5.31559 5.38735 5.50137 5.78449 5.79110 6.24068 6.35043 6.38962 6.97670 7.12040 7.87743 8.06959 9.21917 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002916 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.624687 B = 9599.337805 C =11052.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.163 3.837 3 N -0.300 5.300 4 O -0.108 6.108 5 C 0.276 3.724 6 N -0.492 5.492 7 C 0.208 3.792 8 C -0.110 4.110 9 C -0.162 4.162 10 C 0.000 4.000 11 C 0.559 3.441 12 O -0.538 6.538 13 N -0.696 5.696 14 C 0.151 3.849 15 H 0.080 0.920 16 C -0.156 4.156 17 C -0.126 4.126 18 C 0.153 3.847 19 N -0.758 5.758 20 C -0.235 4.235 21 H 0.053 0.947 22 C -0.066 4.066 23 N -0.986 5.986 24 Si 0.958 3.042 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.247 1.247 28 C -0.230 4.230 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.187 0.813 36 H 0.415 0.585 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.011 0.989 44 H 0.368 0.632 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 19.540 -10.427 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 N -0.050 5.050 4 O -0.110 6.110 5 C 0.094 3.906 6 N -0.215 5.215 7 C 0.065 3.935 8 C -0.167 4.167 9 C -0.182 4.182 10 C -0.013 4.013 11 C 0.344 3.656 12 O -0.416 6.416 13 N -0.348 5.348 14 C 0.047 3.953 15 H 0.098 0.902 16 C -0.214 4.214 17 C -0.164 4.164 18 C 0.027 3.973 19 N -0.404 5.404 20 C -0.366 4.366 21 H 0.071 0.929 22 C -0.258 4.258 23 N -0.637 5.637 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.229 1.229 27 H -0.171 1.171 28 C -0.237 4.237 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.204 0.796 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.201 0.799 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.479 21.672 -9.815 23.796 hybrid contribution -0.509 -1.838 -0.357 1.940 sum -0.029 19.834 -10.172 22.290 Atomic orbital electron populations 1.20701 0.81464 1.05178 1.05841 1.25021 0.99639 0.88292 0.88810 1.80075 0.83708 1.17921 1.23294 1.89192 1.24340 1.15750 1.81692 1.20534 0.89991 0.86359 0.93705 1.66433 1.33183 1.03448 1.18390 1.22057 0.96606 0.87540 0.87254 1.21101 0.92869 0.97274 1.05481 1.22578 0.90780 1.02921 1.01959 1.20014 0.95204 0.90751 0.95288 1.17955 0.86613 0.81398 0.79673 1.90792 1.47470 1.59493 1.43796 1.45997 1.13035 1.24156 1.51566 1.20969 0.81452 0.91998 1.00864 0.90216 1.22117 1.00537 1.00646 0.98098 1.22006 1.02750 0.92832 0.98797 1.20811 0.98025 0.82122 0.96386 1.42705 1.70468 1.03551 1.23693 1.19015 1.28230 0.89066 1.00328 0.92887 1.25572 1.01887 0.96430 1.01873 1.69900 1.51465 1.03834 1.38468 0.85361 0.79258 0.77288 0.79555 1.20024 1.22931 1.17099 1.21320 0.93056 0.95059 1.14225 0.87784 0.88232 0.88278 0.87909 0.86731 0.89165 0.79576 0.74783 0.92556 0.91144 0.90249 0.89269 0.89317 0.94893 0.97095 0.79861 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 8.65 71.23 0.62 -0.67 16 2 C 0.16 3.83 7.43 44.93 0.33 4.17 16 3 N -0.30 -8.15 12.81 -43.68 -0.56 -8.71 16 4 O -0.11 -3.24 12.06 29.72 0.36 -2.88 16 5 C 0.28 7.54 8.64 85.16 0.74 8.27 16 6 N -0.49 -12.04 10.25 -296.38 -3.04 -15.08 16 7 C 0.21 3.70 6.78 42.68 0.29 3.99 16 8 C -0.11 -1.17 10.14 71.24 0.72 -0.44 16 9 C -0.16 -2.63 9.05 22.64 0.20 -2.43 16 10 C 0.00 0.00 5.84 -19.76 -0.12 -0.11 16 11 C 0.56 11.35 7.08 86.83 0.62 11.97 16 12 O -0.54 -13.20 12.83 -3.81 -0.05 -13.25 16 13 N -0.70 -11.35 4.46 -445.25 -1.99 -13.34 16 14 C 0.15 2.64 2.57 44.99 0.12 2.76 16 15 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 16 C -0.16 -2.12 9.48 71.98 0.68 -1.43 16 17 C -0.13 -2.55 4.87 30.60 0.15 -2.40 16 18 C 0.15 4.80 6.15 86.38 0.53 5.33 16 19 N -0.76 -31.61 5.41 -343.45 -1.86 -33.47 16 20 C -0.24 -12.67 10.47 84.03 0.88 -11.79 16 21 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 22 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.99 -61.27 13.97 21.65 0.30 -60.97 16 24 Si 0.96 42.47 27.74 68.60 1.90 44.37 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.25 -9.56 6.52 99.48 0.65 -8.91 16 28 C -0.23 -5.62 6.12 -20.00 -0.12 -5.75 16 29 H 0.10 1.84 7.88 -2.38 -0.02 1.82 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.70 6.24 -2.39 -0.01 1.68 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.11 0.71 8.07 -2.38 -0.02 0.69 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.19 2.01 7.71 -2.91 -0.02 1.99 16 36 H 0.41 5.11 7.87 -92.71 -0.73 4.38 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.03 1.00 7.75 -2.39 -0.02 0.98 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 44 H 0.37 14.29 5.53 -92.71 -0.51 13.78 16 45 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -75.19 377.32 0.92 -74.27 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.26 Total: 20.86 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.11 Total: 8.19 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -7.14 Total: -131.56 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.31 Total: -16.13 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.90 Total: 44.37 kcal Total: -75.19 0.92 -74.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716161375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.333 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds