Wall clock time and date at job start Tue Mar 31 2020 16:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38349 * 119.46172 * 2 1 4 4 C 1.38360 * 119.30031 * 179.72345 * 3 2 1 5 5 C 1.40026 * 118.28877 * 0.55947 * 4 3 2 6 6 C 1.47841 * 120.55930 * 179.73110 * 5 4 3 7 7 O 1.21559 * 119.99725 * 359.73025 * 6 5 4 8 8 N 1.34775 * 120.00084 * 179.72435 * 6 5 4 9 9 C 1.46498 * 120.00077 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47339 * 180.02562 * 9 8 6 11 11 H 1.09003 * 112.78501 * 284.19064 * 10 9 8 12 12 C 1.53509 * 113.47894 * 153.38214 * 10 9 8 13 13 C 1.53511 * 83.57304 * 219.21113 * 12 10 9 14 14 N 1.47472 * 87.93709 * 26.02273 * 13 12 10 15 15 C 1.46899 * 111.00489 * 221.29734 * 14 13 12 16 16 C 1.50704 * 109.46821 * 294.01683 * 15 14 13 17 17 O 1.21293 * 119.99954 * 354.32904 * 16 15 14 18 18 N 1.34777 * 119.99461 * 174.33154 * 16 15 14 19 19 C 1.37102 * 119.99547 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99887 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99811 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00276 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00094 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46919 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47328 * 119.99606 * 23 21 19 26 26 H 1.48495 * 109.47433 * 239.99898 * 23 21 19 27 27 C 1.39523 * 118.87967 * 359.46854 * 5 4 3 28 28 N 1.31685 * 120.56663 * 0.24273 * 27 5 4 29 29 H 1.08998 * 109.46903 * 269.97768 * 1 2 3 30 30 H 1.08998 * 109.46878 * 29.97561 * 1 2 3 31 31 H 1.08999 * 109.47073 * 149.97746 * 1 2 3 32 32 H 1.07995 * 120.35118 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.85448 * 180.29405 * 4 3 2 34 34 H 0.96996 * 119.99740 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47013 * 60.00181 * 9 8 6 36 36 H 1.09002 * 109.46993 * 300.00343 * 9 8 6 37 37 H 1.08994 * 114.17315 * 105.55827 * 12 10 9 38 38 H 1.09005 * 114.34195 * 332.87148 * 12 10 9 39 39 H 1.08996 * 113.47410 * 271.25323 * 13 12 10 40 40 H 1.09009 * 113.52970 * 140.80142 * 13 12 10 41 41 H 1.08997 * 109.46900 * 54.01113 * 15 14 13 42 42 H 1.08994 * 109.47289 * 174.01077 * 15 14 13 43 43 H 0.96996 * 120.00547 * 359.97438 * 18 16 15 44 44 H 0.96996 * 120.00673 * 180.02562 * 22 21 19 45 45 H 1.08000 * 119.71015 * 180.27477 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 0.0058 5 6 4.2313 -0.0342 -0.0005 6 6 5.7083 -0.0969 -0.0007 7 8 6.3602 0.9292 -0.0003 8 7 6.3321 -1.2916 -0.0012 9 6 7.7958 -1.3537 -0.0008 10 6 8.2442 -2.8165 -0.0022 11 1 8.1321 -3.2933 0.9716 12 6 9.6272 -3.0316 -0.6328 13 6 8.9747 -4.2934 -1.2149 14 7 7.6749 -3.6045 -1.1113 15 6 6.6318 -4.5183 -0.6266 16 6 6.3884 -5.5931 -1.6546 17 8 6.9455 -5.5403 -2.7308 18 7 5.5518 -6.6129 -1.3780 19 6 5.3300 -7.5904 -2.3134 20 1 5.8253 -7.5430 -3.2719 21 6 4.4670 -8.6415 -2.0285 22 7 3.8639 -8.6989 -0.8625 23 14 4.1642 -9.9731 -3.3032 24 1 4.9565 -9.6788 -4.5242 25 1 4.5748 -11.2891 -2.7514 26 1 2.7202 -10.0095 -3.6476 27 6 3.4716 -1.2044 -0.0010 28 7 2.1559 -1.1487 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6445 2.1381 0.0004 33 1 4.1276 2.1263 0.0107 34 1 5.8120 -2.1102 -0.0018 35 1 8.1803 -0.8562 0.8896 36 1 8.1808 -0.8551 -0.8904 37 1 10.4202 -3.2310 0.0878 38 1 9.9015 -2.2861 -1.3793 39 1 9.0576 -5.1643 -0.5648 40 1 9.2740 -4.5039 -2.2417 41 1 6.9555 -4.9761 0.3080 42 1 5.7103 -3.9611 -0.4582 43 1 5.1066 -6.6553 -0.5173 44 1 3.2618 -9.4328 -0.6634 45 1 3.9669 -2.1641 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716643478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:13 Heat of formation + Delta-G solvation = 2.792939 kcal Electronic energy + Delta-G solvation = -27940.459526 eV Core-core repulsion = 23959.157043 eV Total energy + Delta-G solvation = -3981.302483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91933 -40.35008 -39.00641 -37.76772 -34.75167 -33.96298 -33.31642 -32.58141 -31.43973 -30.73007 -29.19324 -27.47913 -25.86295 -24.07504 -23.79018 -23.57830 -22.43622 -20.76487 -19.76020 -19.32393 -18.23151 -17.95614 -17.09543 -16.24043 -16.15217 -15.88263 -15.49891 -15.34419 -15.23029 -14.69929 -14.60134 -14.49142 -14.06323 -13.82203 -13.65152 -13.49362 -13.38647 -12.86625 -12.62710 -12.52698 -12.33517 -12.32674 -11.96221 -11.75260 -11.54283 -11.41513 -11.12354 -10.84881 -10.63212 -10.37381 -10.27144 -10.25265 -10.15304 -9.61113 -9.55494 -9.33887 -9.07321 -8.79227 -8.34174 -8.01290 -6.46018 -3.87007 0.40965 0.98193 2.70069 2.96095 3.13548 3.24885 3.31793 3.62068 3.81138 3.90715 3.95926 4.17732 4.40239 4.41574 4.56521 4.60010 4.71533 4.73251 4.90725 4.96092 5.04555 5.18238 5.25376 5.30274 5.31500 5.35796 5.36942 5.44964 5.57728 5.70183 5.71478 5.75741 5.80463 5.81757 5.85713 6.04567 6.14443 6.22877 6.29905 6.33909 6.53202 7.13283 7.33779 7.51510 7.66153 8.00709 8.04079 8.55518 9.13377 9.48122 9.99142 10.71532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.003452 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.767389 B = 8109.737854 C =10990.075796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.149 3.851 3 C -0.182 4.182 4 C -0.014 4.014 5 C -0.195 4.195 6 C 0.565 3.435 7 O -0.542 6.542 8 N -0.714 5.714 9 C 0.142 3.858 10 C 0.002 3.998 11 H 0.084 0.916 12 C -0.136 4.136 13 C 0.016 3.984 14 N -0.438 5.438 15 C 0.007 3.993 16 C 0.441 3.559 17 O -0.577 6.577 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.146 3.854 28 N -0.483 5.483 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 17.012 7.604 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.202 4.202 4 C -0.040 4.040 5 C -0.201 4.201 6 C 0.351 3.649 7 O -0.420 6.420 8 N -0.366 5.366 9 C 0.018 3.982 10 C -0.108 4.108 11 H 0.102 0.898 12 C -0.174 4.174 13 C -0.112 4.112 14 N -0.161 5.161 15 C -0.125 4.125 16 C 0.226 3.774 17 O -0.460 6.460 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.013 4.013 28 N -0.192 5.192 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.282 17.151 6.357 18.293 hybrid contribution -0.128 -0.994 0.740 1.245 sum -0.410 16.157 7.097 17.652 Atomic orbital electron populations 1.20808 0.88388 1.03977 1.03451 1.21609 0.97471 0.88292 0.91435 1.21969 0.94484 0.99568 1.04196 1.21703 0.94020 0.97850 0.90441 1.20984 0.94449 0.95656 1.08966 1.17998 0.86751 0.83717 0.76406 1.90760 1.66957 1.33866 1.50421 1.45868 1.08130 1.08144 1.74452 1.21377 0.79030 0.95272 1.02523 1.23863 0.96236 0.94883 0.95850 0.89824 1.23204 0.94758 0.99260 1.00210 1.23537 0.89392 0.95137 1.03176 1.68903 1.03776 1.15387 1.28014 1.22558 0.97324 0.95294 0.97339 1.19580 0.84704 0.84199 0.88955 1.90541 1.52632 1.77773 1.25084 1.41874 1.39725 1.21007 1.17193 1.19741 1.24753 1.00655 0.97778 0.87860 1.25257 0.96388 0.98874 0.97277 1.69609 1.29802 1.33092 1.21573 0.85812 0.78211 0.80004 0.80409 1.19203 1.20735 1.20677 1.22999 0.89478 0.97500 0.91325 1.67588 1.09495 1.29077 1.13049 0.89931 0.90405 0.89902 0.84054 0.83501 0.76283 0.90986 0.90485 0.90477 0.88620 0.91521 0.88737 0.92472 0.89968 0.77511 0.91854 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 36.01 0.37 -0.44 16 2 C 0.15 1.57 6.78 -82.51 -0.56 1.01 16 3 C -0.18 -1.66 9.72 -39.50 -0.38 -2.05 16 4 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 5 C -0.20 -2.41 5.89 -104.82 -0.62 -3.02 16 6 C 0.56 7.67 7.78 -12.33 -0.10 7.58 16 7 O -0.54 -8.70 16.42 5.31 0.09 -8.61 16 8 N -0.71 -8.75 5.42 -61.25 -0.33 -9.08 16 9 C 0.14 1.63 5.81 -4.04 -0.02 1.60 16 10 C 0.00 0.02 3.25 -71.45 -0.23 -0.21 16 11 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 12 C -0.14 -1.45 8.00 -26.20 -0.21 -1.66 16 13 C 0.02 0.24 6.35 -7.56 -0.05 0.19 16 14 N -0.44 -6.70 5.74 -237.98 -1.37 -8.07 16 15 C 0.01 0.12 5.10 -4.97 -0.03 0.09 16 16 C 0.44 10.01 7.47 -10.98 -0.08 9.93 16 17 O -0.58 -15.21 14.98 5.55 0.08 -15.13 16 18 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 23 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.15 1.82 10.71 -17.14 -0.18 1.63 16 28 N -0.48 -6.30 10.25 -9.14 -0.09 -6.39 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.42 7.74 -52.49 -0.41 1.02 16 34 H 0.40 4.65 4.39 -40.82 -0.18 4.47 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.99 7.94 -51.93 -0.41 0.58 16 39 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 40 H 0.09 1.58 7.97 -51.92 -0.41 1.17 16 41 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 42 H 0.08 1.20 6.55 -51.93 -0.34 0.86 16 43 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.16 1.76 6.42 -52.49 -0.34 1.42 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -34.02 377.93 -9.06 -43.07 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.06 Total: 13.61 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.71 Total: 6.31 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -1.13 Total: -60.75 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.02 -9.06 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716643478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.867 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds