Wall clock time and date at job start Tue Mar 31 2020 16:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38349 * 119.46172 * 2 1 4 4 C 1.38360 * 119.30031 * 179.72345 * 3 2 1 5 5 C 1.40026 * 118.28877 * 0.55947 * 4 3 2 6 6 C 1.47841 * 120.55930 * 179.73110 * 5 4 3 7 7 O 1.21559 * 119.99725 * 359.73025 * 6 5 4 8 8 N 1.34775 * 120.00084 * 179.72435 * 6 5 4 9 9 C 1.46498 * 120.00077 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47339 * 180.02562 * 9 8 6 11 11 H 1.09003 * 112.78501 * 284.19064 * 10 9 8 12 12 C 1.53509 * 113.47894 * 153.38214 * 10 9 8 13 13 C 1.53511 * 83.57304 * 219.21113 * 12 10 9 14 14 N 1.47472 * 87.93709 * 26.02273 * 13 12 10 15 15 C 1.46899 * 111.00489 * 221.29734 * 14 13 12 16 16 C 1.50704 * 109.46821 * 294.01683 * 15 14 13 17 17 O 1.21293 * 119.99954 * 354.32904 * 16 15 14 18 18 N 1.34777 * 119.99461 * 174.33154 * 16 15 14 19 19 C 1.37102 * 119.99547 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99887 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99811 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00276 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00094 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46919 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47328 * 119.99606 * 23 21 19 26 26 H 1.48495 * 109.47433 * 239.99898 * 23 21 19 27 27 C 1.39523 * 118.87967 * 359.46854 * 5 4 3 28 28 N 1.31685 * 120.56663 * 0.24273 * 27 5 4 29 29 H 1.08998 * 109.46903 * 269.97768 * 1 2 3 30 30 H 1.08998 * 109.46878 * 29.97561 * 1 2 3 31 31 H 1.08999 * 109.47073 * 149.97746 * 1 2 3 32 32 H 1.07995 * 120.35118 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.85448 * 180.29405 * 4 3 2 34 34 H 0.96996 * 119.99740 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47013 * 60.00181 * 9 8 6 36 36 H 1.09002 * 109.46993 * 300.00343 * 9 8 6 37 37 H 1.08994 * 114.17315 * 105.55827 * 12 10 9 38 38 H 1.09005 * 114.34195 * 332.87148 * 12 10 9 39 39 H 1.08996 * 113.47410 * 271.25323 * 13 12 10 40 40 H 1.09009 * 113.52970 * 140.80142 * 13 12 10 41 41 H 1.08997 * 109.46900 * 54.01113 * 15 14 13 42 42 H 1.08994 * 109.47289 * 174.01077 * 15 14 13 43 43 H 0.96996 * 120.00547 * 359.97438 * 18 16 15 44 44 H 0.96996 * 120.00673 * 180.02562 * 22 21 19 45 45 H 1.08000 * 119.71015 * 180.27477 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 0.0058 5 6 4.2313 -0.0342 -0.0005 6 6 5.7083 -0.0969 -0.0007 7 8 6.3602 0.9292 -0.0003 8 7 6.3321 -1.2916 -0.0012 9 6 7.7958 -1.3537 -0.0008 10 6 8.2442 -2.8165 -0.0022 11 1 8.1321 -3.2933 0.9716 12 6 9.6272 -3.0316 -0.6328 13 6 8.9747 -4.2934 -1.2149 14 7 7.6749 -3.6045 -1.1113 15 6 6.6318 -4.5183 -0.6266 16 6 6.3884 -5.5931 -1.6546 17 8 6.9455 -5.5403 -2.7308 18 7 5.5518 -6.6129 -1.3780 19 6 5.3300 -7.5904 -2.3134 20 1 5.8253 -7.5430 -3.2719 21 6 4.4670 -8.6415 -2.0285 22 7 3.8639 -8.6989 -0.8625 23 14 4.1642 -9.9731 -3.3032 24 1 4.9565 -9.6788 -4.5242 25 1 4.5748 -11.2891 -2.7514 26 1 2.7202 -10.0095 -3.6476 27 6 3.4716 -1.2044 -0.0010 28 7 2.1559 -1.1487 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6445 2.1381 0.0004 33 1 4.1276 2.1263 0.0107 34 1 5.8120 -2.1102 -0.0018 35 1 8.1803 -0.8562 0.8896 36 1 8.1808 -0.8551 -0.8904 37 1 10.4202 -3.2310 0.0878 38 1 9.9015 -2.2861 -1.3793 39 1 9.0576 -5.1643 -0.5648 40 1 9.2740 -4.5039 -2.2417 41 1 6.9555 -4.9761 0.3080 42 1 5.7103 -3.9611 -0.4582 43 1 5.1066 -6.6553 -0.5173 44 1 3.2618 -9.4328 -0.6634 45 1 3.9669 -2.1641 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716643478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:13 Heat of formation + Delta-G solvation = -24.141909 kcal Electronic energy + Delta-G solvation = -27941.627508 eV Core-core repulsion = 23959.157043 eV Total energy + Delta-G solvation = -3982.470465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89670 -41.40845 -40.08048 -39.49295 -36.01118 -35.72438 -34.12756 -33.40983 -33.34339 -32.08357 -30.09558 -28.32787 -27.56056 -25.38101 -24.94326 -24.49936 -23.32759 -21.73881 -21.12007 -20.72695 -19.92635 -19.17513 -18.03627 -17.75195 -17.24839 -16.87702 -16.65451 -16.45855 -16.37137 -16.27913 -15.81309 -15.61371 -15.38953 -15.26126 -14.90816 -14.42666 -14.22815 -14.18724 -13.80651 -13.56982 -13.34425 -13.19951 -13.12966 -13.00503 -12.91765 -12.80398 -12.44932 -12.37184 -12.13716 -11.92366 -11.73894 -11.51316 -11.27175 -11.00549 -10.51075 -10.33799 -10.26817 -10.02819 -9.95923 -9.79837 -8.48122 -5.96564 -0.45372 0.16298 1.34851 1.40829 1.54324 1.72884 1.98428 2.04603 2.27324 2.74890 2.81446 3.12753 3.18174 3.23707 3.54863 3.64697 3.69067 3.76229 3.79275 3.92694 4.06866 4.15291 4.25177 4.28591 4.34580 4.42378 4.47604 4.58660 4.64990 4.70150 4.78707 4.84516 4.88735 5.00406 5.01727 5.05273 5.14762 5.18009 5.28671 5.39590 5.42168 5.57770 5.90424 6.07706 6.34632 6.58423 6.82540 7.03249 7.11666 7.54139 8.09852 8.69245 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.003452 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.767389 B = 8109.737854 C =10990.075796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.138 3.862 3 C -0.170 4.170 4 C -0.021 4.021 5 C -0.210 4.210 6 C 0.564 3.436 7 O -0.572 6.572 8 N -0.710 5.710 9 C 0.142 3.858 10 C 0.014 3.986 11 H 0.107 0.893 12 C -0.114 4.114 13 C 0.006 3.994 14 N -0.465 5.465 15 C 0.019 3.981 16 C 0.439 3.561 17 O -0.618 6.618 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.989 3.011 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.135 3.865 28 N -0.515 5.515 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.179 0.821 33 H 0.155 0.845 34 H 0.403 0.597 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 18.111 8.969 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.001 3.999 3 C -0.189 4.189 4 C -0.047 4.047 5 C -0.215 4.215 6 C 0.352 3.648 7 O -0.453 6.453 8 N -0.361 5.361 9 C 0.019 3.981 10 C -0.095 4.095 11 H 0.125 0.875 12 C -0.152 4.152 13 C -0.123 4.123 14 N -0.188 5.188 15 C -0.113 4.113 16 C 0.226 3.774 17 O -0.504 6.504 18 N -0.209 5.209 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.024 4.024 28 N -0.225 5.225 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.197 0.803 33 H 0.173 0.827 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.902 18.240 7.751 19.839 hybrid contribution 0.047 -1.274 0.298 1.309 sum -0.855 16.967 8.049 18.798 Atomic orbital electron populations 1.20917 0.86229 1.04759 1.04522 1.22215 0.99003 0.88155 0.90493 1.22329 0.93844 1.00602 1.02138 1.21948 0.94962 0.97580 0.90205 1.20966 0.93740 0.96441 1.10337 1.18201 0.87264 0.83553 0.75816 1.90735 1.67634 1.34752 1.52136 1.45886 1.08555 1.07963 1.73719 1.21435 0.78577 0.95364 1.02752 1.23900 0.95880 0.94087 0.95676 0.87487 1.23146 0.95162 0.96565 1.00309 1.23545 0.90108 0.97022 1.01629 1.68908 1.03794 1.15609 1.30508 1.22465 0.99078 0.93822 0.95896 1.20671 0.82728 0.84428 0.89530 1.90514 1.53709 1.78750 1.27383 1.41928 1.40595 1.21352 1.16988 1.19653 1.26139 1.02617 0.97811 0.90537 1.25976 0.95616 1.00262 0.99115 1.69661 1.29865 1.33788 1.22534 0.84925 0.78229 0.77688 0.77843 1.19957 1.19470 1.19679 1.23053 0.89656 0.97773 0.91898 1.67604 1.09771 1.30766 1.14313 0.88571 0.87679 0.91060 0.80328 0.82692 0.75957 0.89298 0.91727 0.87298 0.88416 0.91558 0.92022 0.89804 0.87945 0.76984 0.91286 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.16 71.24 0.72 -0.63 16 2 C 0.14 2.70 6.78 42.57 0.29 2.98 16 3 C -0.17 -2.71 9.72 22.33 0.22 -2.49 16 4 C -0.02 -0.42 9.72 22.73 0.22 -0.20 16 5 C -0.21 -5.08 5.89 -19.99 -0.12 -5.20 16 6 C 0.56 15.08 7.78 86.79 0.68 15.76 16 7 O -0.57 -18.14 16.42 -3.90 -0.06 -18.21 16 8 N -0.71 -16.71 5.42 -465.97 -2.52 -19.23 16 9 C 0.14 3.02 5.81 86.38 0.50 3.52 16 10 C 0.01 0.29 3.25 42.18 0.14 0.42 16 11 H 0.11 1.76 7.64 -2.39 -0.02 1.74 16 12 C -0.11 -2.17 8.00 30.94 0.25 -1.92 16 13 C 0.01 0.17 6.35 83.57 0.53 0.70 16 14 N -0.46 -13.87 5.74 -906.84 -5.21 -19.08 16 15 C 0.02 0.61 5.10 85.56 0.44 1.05 16 16 C 0.44 20.37 7.47 87.66 0.66 21.02 16 17 O -0.62 -33.84 14.98 -3.07 -0.05 -33.89 16 18 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 22 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 23 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.13 3.34 10.71 85.03 0.91 4.26 16 28 N -0.51 -13.23 10.25 -182.82 -1.87 -15.10 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.16 2.81 7.74 -2.91 -0.02 2.79 16 34 H 0.40 8.98 4.39 -92.71 -0.41 8.57 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.56 7.88 -2.39 -0.02 1.54 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.85 7.94 -2.38 -0.02 1.84 16 39 H 0.07 1.88 7.83 -2.39 -0.02 1.86 16 40 H 0.06 2.15 7.97 -2.38 -0.02 2.13 16 41 H 0.08 2.26 7.56 -2.39 -0.02 2.24 16 42 H 0.10 2.87 6.55 -2.39 -0.02 2.85 16 43 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.16 3.60 6.42 -2.91 -0.02 3.59 16 Total: -1.00 -76.23 377.93 -2.42 -78.65 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.10 Total: 39.71 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 6.71 Total: 21.29 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -10.94 Total: -132.44 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.11 Total: -52.09 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -76.23 -2.42 -78.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716643478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.510 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds