Wall clock time and date at job start Tue Mar 31 2020 16:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34847 * 119.68130 * 2 1 4 4 C 1.40568 * 120.34576 * 180.02562 * 3 2 1 5 5 C 1.35897 * 119.72773 * 359.97438 * 4 3 2 6 6 C 1.41182 * 119.34590 * 0.02562 * 5 4 3 7 7 N 1.32236 * 132.04614 * 180.33691 * 6 5 4 8 8 C 1.34586 * 109.02735 * 180.08545 * 7 6 5 9 9 C 1.47584 * 125.92161 * 179.85920 * 8 7 6 10 10 O 1.21593 * 120.00181 * 185.61282 * 9 8 7 11 11 N 1.34778 * 120.00100 * 5.61044 * 9 8 7 12 12 C 1.46504 * 120.00042 * 356.15561 * 11 9 8 13 13 C 1.46502 * 120.00251 * 176.15026 * 11 9 8 14 14 C 1.53005 * 109.46682 * 90.00478 * 13 11 9 15 15 H 1.09004 * 109.47500 * 59.99767 * 14 13 11 16 16 O 1.42905 * 109.46880 * 299.99840 * 14 13 11 17 17 C 1.53000 * 109.46814 * 180.02562 * 14 13 11 18 18 N 1.46508 * 109.46619 * 184.99752 * 17 14 13 19 19 C 1.36940 * 119.99345 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00421 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99692 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00053 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46954 * 59.99973 * 23 21 19 25 25 H 1.48502 * 109.47128 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46873 * 299.99973 * 23 21 19 27 27 C 1.36574 * 108.16044 * 359.60268 * 8 7 6 28 28 N 1.36197 * 107.09320 * 0.23770 * 27 8 7 29 29 H 1.08999 * 109.47210 * 269.97815 * 1 2 3 30 30 H 1.09004 * 109.47303 * 29.97584 * 1 2 3 31 31 H 1.09005 * 109.47286 * 149.98082 * 1 2 3 32 32 H 1.08003 * 119.82303 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.13330 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.32569 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47229 * 275.70804 * 12 11 9 36 36 H 1.09002 * 109.46883 * 35.70495 * 12 11 9 37 37 H 1.08995 * 109.47415 * 155.70640 * 12 11 9 38 38 H 1.08993 * 109.47014 * 330.00757 * 13 11 9 39 39 H 1.08999 * 109.47095 * 210.00115 * 13 11 9 40 40 H 0.96692 * 113.99899 * 299.99914 * 16 14 13 41 41 H 1.08997 * 109.47148 * 304.99699 * 17 14 13 42 42 H 1.09004 * 109.46894 * 65.00234 * 17 14 13 43 43 H 0.96992 * 120.00251 * 0.02562 * 18 17 14 44 44 H 0.97000 * 120.00036 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.45607 * 180.27511 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0156 -0.0005 6 6 3.5564 -1.2038 -0.0005 7 7 3.9582 -2.4636 0.0052 8 6 2.8794 -3.2683 0.0002 9 6 2.9000 -4.7440 0.0011 10 8 1.8611 -5.3666 -0.1067 11 7 4.0703 -5.4016 0.1215 12 6 5.3294 -4.6540 0.1667 13 6 4.0834 -6.8641 0.2073 14 6 4.1889 -7.4564 -1.1995 15 1 5.1094 -7.1118 -1.6708 16 8 3.0679 -7.0350 -1.9791 17 6 4.2020 -8.9838 -1.1100 18 7 4.4227 -9.5491 -2.4435 19 6 4.4729 -10.9072 -2.6115 20 1 4.3501 -11.5615 -1.7611 21 6 4.6826 -11.4430 -3.8748 22 7 4.8337 -10.6456 -4.9110 23 14 4.7517 -13.2956 -4.1040 24 1 3.4655 -13.8966 -3.6684 25 1 4.9850 -13.6087 -5.5367 26 1 5.8603 -13.8541 -3.2889 27 6 1.7623 -2.4826 0.0000 28 7 2.1838 -1.1875 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6267 2.1022 0.0004 33 1 4.1116 2.1281 -0.0010 34 1 5.3478 0.0169 -0.0014 35 1 5.6615 -4.4398 -0.8492 36 1 5.1770 -3.7179 0.7040 37 1 6.0864 -5.2478 0.6788 38 1 3.1629 -7.2086 0.6784 39 1 4.9384 -7.1855 0.8019 40 1 2.2132 -7.3073 -1.6183 41 1 5.0034 -9.3018 -0.4433 42 1 3.2455 -9.3331 -0.7211 43 1 4.5333 -8.9615 -3.2072 44 1 4.9798 -11.0199 -5.7938 45 1 0.7377 -2.8240 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717934530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:41 Heat of formation + Delta-G solvation = 32.444663 kcal Electronic energy + Delta-G solvation = -27890.102339 eV Core-core repulsion = 23910.085651 eV Total energy + Delta-G solvation = -3980.016687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.24766 -39.78386 -37.90340 -37.00167 -35.18492 -34.55711 -33.88016 -31.86675 -31.15398 -29.86084 -29.19490 -27.74804 -26.66404 -25.85793 -23.95032 -23.11989 -22.48778 -21.61256 -20.99027 -19.41764 -18.31674 -17.08285 -17.04881 -16.95364 -16.57410 -16.25035 -15.67293 -15.50520 -14.90372 -14.72477 -14.69325 -14.32109 -14.22504 -13.93087 -13.54525 -13.42591 -13.25188 -12.85321 -12.82224 -12.75900 -12.52717 -12.24335 -12.03934 -12.00938 -11.77678 -11.39197 -11.32318 -10.86598 -10.73812 -10.53605 -10.36290 -10.12036 -9.88674 -9.68017 -9.47382 -9.19261 -8.80997 -8.37057 -8.16007 -6.83070 -5.66619 -2.95753 0.22584 0.85068 1.86521 2.06695 2.98856 3.06018 3.47821 3.49782 3.53352 3.55143 3.71075 3.88336 4.23025 4.28138 4.56247 4.64900 4.69535 4.83867 4.90361 4.97839 4.99812 5.08389 5.19011 5.24884 5.36279 5.39720 5.43304 5.58591 5.62970 5.71741 5.74361 5.80796 5.88219 5.93321 6.04717 6.14801 6.26678 6.36297 6.55426 6.63069 6.72009 6.86854 7.30512 7.50176 7.75831 8.24667 8.36592 8.51932 9.62610 10.21882 10.57669 11.55841 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002096 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.597934 B =13354.200862 C =13543.579669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.089 3.911 3 C -0.145 4.145 4 C -0.098 4.098 5 C -0.082 4.082 6 C 0.225 3.775 7 N -0.460 5.460 8 C 0.018 3.982 9 C 0.603 3.397 10 O -0.532 6.532 11 N -0.591 5.591 12 C 0.072 3.928 13 C 0.085 3.915 14 C 0.086 3.914 15 H 0.096 0.904 16 O -0.547 6.547 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.020 4.020 28 N -0.361 5.361 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.373 0.627 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 30.066 15.318 34.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.014 4.014 3 C -0.165 4.165 4 C -0.121 4.121 5 C -0.102 4.102 6 C -0.020 4.020 7 N -0.182 5.182 8 C -0.114 4.114 9 C 0.389 3.611 10 O -0.409 6.409 11 N -0.322 5.322 12 C -0.071 4.071 13 C -0.038 4.038 14 C 0.026 3.974 15 H 0.113 0.887 16 O -0.352 6.352 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.155 4.155 28 N -0.034 5.034 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.221 0.779 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.447 29.460 14.919 33.320 hybrid contribution -0.928 -0.854 -0.150 1.270 sum -5.375 28.606 14.768 32.639 Atomic orbital electron populations 1.20975 0.87712 1.04903 1.04103 1.20366 0.95336 0.83648 1.02002 1.20647 0.94820 0.96520 1.04537 1.21047 0.93666 0.98475 0.98960 1.20329 1.00842 0.87546 1.01453 1.21172 0.79985 0.94819 1.06016 1.71049 1.27945 0.97709 1.21510 1.20636 0.89061 0.94491 1.07236 1.16798 0.83698 0.83968 0.76635 1.90758 1.32265 1.67537 1.50337 1.47469 1.06628 1.06732 1.71346 1.22265 0.84272 0.97769 1.02768 1.22336 1.03863 0.78724 0.98866 1.22486 0.90781 0.94128 0.90045 0.88660 1.86550 1.16239 1.79726 1.52683 1.21249 0.98122 0.90659 0.90225 1.42254 1.86957 1.04359 1.03432 1.19188 1.41602 0.83139 0.93290 0.91322 1.24766 1.02933 0.97706 0.95665 1.69679 1.56047 1.33356 0.98838 0.86254 0.77766 0.85411 0.76653 1.21298 1.21710 1.21319 1.22522 1.01275 0.80122 1.11578 1.42739 1.08903 1.05602 1.46107 0.89546 0.89000 0.90326 0.83159 0.83828 0.82902 0.92623 0.87816 0.91925 0.89536 0.89465 0.77912 0.95800 0.96107 0.77744 0.93505 0.78907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 9.84 36.01 0.35 -0.12 16 2 C 0.09 0.61 6.78 -81.63 -0.55 0.05 16 3 C -0.14 -0.72 9.58 -39.91 -0.38 -1.10 16 4 C -0.10 -0.50 10.06 -39.54 -0.40 -0.90 16 5 C -0.08 -0.61 10.11 -39.30 -0.40 -1.01 16 6 C 0.22 2.47 7.79 -156.04 -1.22 1.25 16 7 N -0.46 -6.01 7.76 -9.35 -0.07 -6.08 16 8 C 0.02 0.26 6.65 -83.45 -0.55 -0.30 16 9 C 0.60 9.58 7.23 -12.45 -0.09 9.49 16 10 O -0.53 -9.49 15.03 -7.49 -0.11 -9.60 16 11 N -0.59 -8.67 2.83 -182.79 -0.52 -9.19 16 12 C 0.07 0.89 9.68 59.85 0.58 1.47 16 13 C 0.09 1.25 5.18 -4.04 -0.02 1.23 16 14 C 0.09 1.59 3.27 -26.73 -0.09 1.50 16 15 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 16 O -0.55 -11.26 12.01 -48.00 -0.58 -11.83 16 17 C 0.13 2.68 5.90 -4.04 -0.02 2.66 16 18 N -0.73 -19.73 5.55 -59.90 -0.33 -20.06 16 19 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -29.65 13.06 55.49 0.72 -28.93 16 23 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C -0.02 -0.23 10.79 -16.21 -0.17 -0.41 16 28 N -0.36 -3.63 2.93 -58.17 -0.17 -3.80 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.18 8.07 -51.93 -0.42 -0.24 16 31 H 0.08 0.36 7.46 -51.93 -0.39 -0.03 16 32 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 33 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.26 5.23 -51.93 -0.27 0.99 16 37 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 38 H 0.09 1.29 7.48 -51.93 -0.39 0.90 16 39 H 0.09 1.07 7.86 -51.93 -0.41 0.67 16 40 H 0.37 7.16 8.34 45.56 0.38 7.54 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.39 11.39 7.67 -40.82 -0.31 11.08 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.19 1.85 7.77 -52.49 -0.41 1.45 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -37.54 377.11 -9.16 -46.70 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.55 Total: 12.83 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -3.21 Total: 6.04 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.37 Total: -68.06 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.69 Total: -21.43 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.54 -9.16 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717934530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.147 kcal (2) G-P(sol) polarization free energy of solvation -37.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds