Wall clock time and date at job start Tue Mar 31 2020 16:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34847 * 119.68130 * 2 1 4 4 C 1.40568 * 120.34576 * 180.02562 * 3 2 1 5 5 C 1.35897 * 119.72773 * 359.97438 * 4 3 2 6 6 C 1.41182 * 119.34590 * 0.02562 * 5 4 3 7 7 N 1.32236 * 132.04614 * 180.33691 * 6 5 4 8 8 C 1.34586 * 109.02735 * 180.08545 * 7 6 5 9 9 C 1.47584 * 125.92161 * 179.85920 * 8 7 6 10 10 O 1.21593 * 120.00181 * 185.61282 * 9 8 7 11 11 N 1.34778 * 120.00100 * 5.61044 * 9 8 7 12 12 C 1.46504 * 120.00042 * 356.15561 * 11 9 8 13 13 C 1.46502 * 120.00251 * 176.15026 * 11 9 8 14 14 C 1.53005 * 109.46682 * 90.00478 * 13 11 9 15 15 H 1.09004 * 109.47500 * 59.99767 * 14 13 11 16 16 O 1.42905 * 109.46880 * 299.99840 * 14 13 11 17 17 C 1.53000 * 109.46814 * 180.02562 * 14 13 11 18 18 N 1.46508 * 109.46619 * 184.99752 * 17 14 13 19 19 C 1.36940 * 119.99345 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00421 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99692 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00053 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46954 * 59.99973 * 23 21 19 25 25 H 1.48502 * 109.47128 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46873 * 299.99973 * 23 21 19 27 27 C 1.36574 * 108.16044 * 359.60268 * 8 7 6 28 28 N 1.36197 * 107.09320 * 0.23770 * 27 8 7 29 29 H 1.08999 * 109.47210 * 269.97815 * 1 2 3 30 30 H 1.09004 * 109.47303 * 29.97584 * 1 2 3 31 31 H 1.09005 * 109.47286 * 149.98082 * 1 2 3 32 32 H 1.08003 * 119.82303 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.13330 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.32569 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47229 * 275.70804 * 12 11 9 36 36 H 1.09002 * 109.46883 * 35.70495 * 12 11 9 37 37 H 1.08995 * 109.47415 * 155.70640 * 12 11 9 38 38 H 1.08993 * 109.47014 * 330.00757 * 13 11 9 39 39 H 1.08999 * 109.47095 * 210.00115 * 13 11 9 40 40 H 0.96692 * 113.99899 * 299.99914 * 16 14 13 41 41 H 1.08997 * 109.47148 * 304.99699 * 17 14 13 42 42 H 1.09004 * 109.46894 * 65.00234 * 17 14 13 43 43 H 0.96992 * 120.00251 * 0.02562 * 18 17 14 44 44 H 0.97000 * 120.00036 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.45607 * 180.27511 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0156 -0.0005 6 6 3.5564 -1.2038 -0.0005 7 7 3.9582 -2.4636 0.0052 8 6 2.8794 -3.2683 0.0002 9 6 2.9000 -4.7440 0.0011 10 8 1.8611 -5.3666 -0.1067 11 7 4.0703 -5.4016 0.1215 12 6 5.3294 -4.6540 0.1667 13 6 4.0834 -6.8641 0.2073 14 6 4.1889 -7.4564 -1.1995 15 1 5.1094 -7.1118 -1.6708 16 8 3.0679 -7.0350 -1.9791 17 6 4.2020 -8.9838 -1.1100 18 7 4.4227 -9.5491 -2.4435 19 6 4.4729 -10.9072 -2.6115 20 1 4.3501 -11.5615 -1.7611 21 6 4.6826 -11.4430 -3.8748 22 7 4.8337 -10.6456 -4.9110 23 14 4.7517 -13.2956 -4.1040 24 1 3.4655 -13.8966 -3.6684 25 1 4.9850 -13.6087 -5.5367 26 1 5.8603 -13.8541 -3.2889 27 6 1.7623 -2.4826 0.0000 28 7 2.1838 -1.1875 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6267 2.1022 0.0004 33 1 4.1116 2.1281 -0.0010 34 1 5.3478 0.0169 -0.0014 35 1 5.6615 -4.4398 -0.8492 36 1 5.1770 -3.7179 0.7040 37 1 6.0864 -5.2478 0.6788 38 1 3.1629 -7.2086 0.6784 39 1 4.9384 -7.1855 0.8019 40 1 2.2132 -7.3073 -1.6183 41 1 5.0034 -9.3018 -0.4433 42 1 3.2455 -9.3331 -0.7211 43 1 4.5333 -8.9615 -3.2072 44 1 4.9798 -11.0199 -5.7938 45 1 0.7377 -2.8240 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717934530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:40 Heat of formation + Delta-G solvation = 6.354531 kcal Electronic energy + Delta-G solvation = -27891.233692 eV Core-core repulsion = 23910.085651 eV Total energy + Delta-G solvation = -3981.148040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.97449 -40.93922 -38.85177 -38.24328 -36.46159 -35.86689 -35.15118 -33.23863 -32.49678 -30.95900 -30.37005 -28.20578 -27.94831 -27.23686 -25.40047 -23.98131 -23.72997 -22.69648 -22.26721 -20.45190 -19.23871 -19.07827 -17.99253 -17.82584 -17.57278 -17.29149 -16.79643 -16.51607 -16.46506 -16.04004 -15.97230 -15.30784 -15.27385 -15.00836 -14.80157 -14.47508 -14.31571 -14.09160 -13.88503 -13.69201 -13.65756 -13.31671 -13.23203 -12.97037 -12.74433 -12.62416 -12.46364 -12.34305 -12.21305 -12.07328 -12.02423 -11.82505 -11.44059 -11.11277 -10.96806 -10.85639 -9.95864 -9.55082 -9.02730 -8.85118 -7.94842 -5.25560 -0.35813 0.19774 0.97780 1.38543 1.45504 1.50362 1.56412 1.98386 2.28469 2.54062 2.55815 2.98628 3.29613 3.36225 3.50978 3.63652 3.73342 3.78762 3.97662 4.08175 4.17134 4.19850 4.22609 4.35764 4.48804 4.53267 4.56082 4.61276 4.63512 4.69051 4.72664 4.79437 4.91306 4.96573 5.07031 5.14088 5.22809 5.25226 5.34416 5.45862 5.57355 5.58757 5.95521 6.25223 6.29777 6.56938 6.81245 7.10289 7.31141 8.07021 8.30608 9.28655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002096 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.597934 B =13354.200862 C =13543.579669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.065 3.935 3 C -0.134 4.134 4 C -0.073 4.073 5 C -0.111 4.111 6 C 0.213 3.787 7 N -0.488 5.488 8 C -0.015 4.015 9 C 0.595 3.405 10 O -0.563 6.563 11 N -0.593 5.593 12 C 0.076 3.924 13 C 0.095 3.905 14 C 0.096 3.904 15 H 0.084 0.916 16 O -0.567 6.567 17 C 0.126 3.874 18 N -0.742 5.742 19 C -0.249 4.249 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.981 3.019 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.273 1.273 27 C -0.025 4.025 28 N -0.363 5.363 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.191 0.809 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.041 0.959 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.377 0.623 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 32.300 16.862 36.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.131 4.131 6 C -0.032 4.032 7 N -0.210 5.210 8 C -0.147 4.147 9 C 0.383 3.617 10 O -0.442 6.442 11 N -0.323 5.323 12 C -0.066 4.066 13 C -0.028 4.028 14 C 0.035 3.965 15 H 0.102 0.898 16 O -0.373 6.373 17 C -0.002 4.002 18 N -0.385 5.385 19 C -0.381 4.381 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.809 3.191 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.199 1.199 27 C -0.161 4.161 28 N -0.035 5.035 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.208 0.792 33 H 0.200 0.800 34 H 0.183 0.817 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.225 0.775 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.496 31.714 16.526 36.043 hybrid contribution -0.943 -1.274 -0.583 1.689 sum -5.438 30.440 15.944 34.790 Atomic orbital electron populations 1.21073 0.85853 1.05623 1.04943 1.21104 0.96899 0.83078 1.02580 1.21262 0.95068 0.97239 1.01811 1.21597 0.93984 0.99022 0.95095 1.20660 1.01737 0.87085 1.03577 1.21747 0.80839 0.95212 1.05381 1.70916 1.28051 0.98705 1.23370 1.20474 0.90476 0.93764 1.09986 1.17202 0.83581 0.85018 0.75943 1.90713 1.33218 1.68428 1.51862 1.47571 1.07146 1.06684 1.70879 1.22318 0.83789 0.98285 1.02243 1.22206 1.05242 0.78907 0.96457 1.22411 0.89621 0.92442 0.92000 0.89841 1.86522 1.16964 1.79953 1.53874 1.21434 0.98601 0.92358 0.87761 1.42486 1.87155 1.03746 1.05105 1.19665 1.40270 0.84412 0.93707 0.90253 1.25710 1.03420 1.02739 0.95447 1.69866 1.57838 1.35455 0.99116 0.85103 0.78263 0.79446 0.76265 1.20310 1.22166 1.19925 1.22606 1.01144 0.80894 1.11416 1.42874 1.08862 1.05955 1.45780 0.88578 0.86389 0.91483 0.79155 0.79968 0.81653 0.94049 0.87496 0.89530 0.89580 0.86336 0.77514 0.93904 0.95658 0.79586 0.94024 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.84 71.24 0.70 0.01 16 2 C 0.07 0.76 6.78 41.02 0.28 1.04 16 3 C -0.13 -0.81 9.58 22.06 0.21 -0.60 16 4 C -0.07 -0.48 10.06 22.29 0.22 -0.26 16 5 C -0.11 -1.49 10.11 22.45 0.23 -1.26 16 6 C 0.21 4.69 7.79 134.20 1.05 5.73 16 7 N -0.49 -13.26 7.76 -183.50 -1.42 -14.69 16 8 C -0.02 -0.45 6.65 40.80 0.27 -0.18 16 9 C 0.59 19.84 7.23 86.71 0.63 20.47 16 10 O -0.56 -21.12 15.03 8.21 0.12 -20.99 16 11 N -0.59 -17.75 2.83 -850.47 -2.40 -20.15 16 12 C 0.08 1.89 9.68 127.77 1.24 3.13 16 13 C 0.10 2.77 5.18 86.38 0.45 3.22 16 14 C 0.10 3.57 3.27 30.60 0.10 3.67 16 15 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 16 O -0.57 -24.27 12.01 -136.77 -1.64 -25.91 16 17 C 0.13 5.33 5.90 86.38 0.51 5.84 16 18 N -0.74 -41.00 5.55 -343.43 -1.91 -42.91 16 19 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 22 N -0.97 -63.33 13.06 21.65 0.28 -63.05 16 23 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 27 C -0.02 -0.60 10.79 83.63 0.90 0.30 16 28 N -0.36 -7.20 2.93 -337.96 -0.99 -8.19 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 0.05 8.07 -2.39 -0.02 0.03 16 31 H 0.07 0.57 7.46 -2.38 -0.02 0.55 16 32 H 0.19 -0.39 8.06 -2.91 -0.02 -0.41 16 33 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 2.67 5.23 -2.39 -0.01 2.66 16 37 H 0.09 1.70 7.83 -2.39 -0.02 1.68 16 38 H 0.09 2.54 7.48 -2.39 -0.02 2.53 16 39 H 0.12 2.69 7.86 -2.39 -0.02 2.67 16 40 H 0.38 15.14 8.34 -74.06 -0.62 14.52 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.37 22.59 7.67 -92.71 -0.71 21.88 16 44 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.20 4.18 7.77 -2.91 -0.02 4.16 16 Total: -1.00 -84.46 377.11 1.86 -82.60 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.30 Total: 40.37 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 8.09 Total: 22.80 kcal Atomic # 7 Polarization: -142.54 SS G_CDS: -6.44 Total: -148.99 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.52 Total: -46.91 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.46 1.86 -82.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717934530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.959 kcal (2) G-P(sol) polarization free energy of solvation -84.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds