Wall clock time and date at job start Tue Mar 31 2020 16:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34847 * 119.67912 * 2 1 4 4 C 1.40569 * 120.34184 * 180.02562 * 3 2 1 5 5 C 1.35901 * 119.73109 * 359.97438 * 4 3 2 6 6 C 1.41190 * 119.34306 * 0.02562 * 5 4 3 7 7 N 1.32236 * 132.04352 * 180.34634 * 6 5 4 8 8 C 1.34579 * 109.02531 * 180.08721 * 7 6 5 9 9 C 1.47590 * 125.92262 * 179.85752 * 8 7 6 10 10 O 1.21588 * 120.00191 * 185.62680 * 9 8 7 11 11 N 1.34780 * 119.99252 * 5.62851 * 9 8 7 12 12 C 1.46499 * 120.00528 * 356.06665 * 11 9 8 13 13 C 1.46509 * 119.99486 * 176.06800 * 11 9 8 14 14 C 1.52995 * 109.47234 * 89.99832 * 13 11 9 15 15 H 1.09006 * 109.47183 * 305.00346 * 14 13 11 16 16 O 1.42898 * 109.47128 * 64.99952 * 14 13 11 17 17 C 1.52998 * 109.47141 * 184.99807 * 14 13 11 18 18 N 1.46500 * 109.46946 * 179.97438 * 17 14 13 19 19 C 1.36938 * 119.99649 * 179.72554 * 18 17 14 20 20 H 1.07997 * 120.00254 * 0.27794 * 19 18 17 21 21 C 1.38816 * 119.99664 * 180.27839 * 19 18 17 22 22 N 1.31622 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47200 * 60.00560 * 23 21 19 25 25 H 1.48505 * 109.46872 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47307 * 299.99981 * 23 21 19 27 27 C 1.36582 * 108.15904 * 359.59335 * 8 7 6 28 28 N 1.36193 * 107.09313 * 0.23976 * 27 8 7 29 29 H 1.08997 * 109.47733 * 269.97964 * 1 2 3 30 30 H 1.08999 * 109.47073 * 29.98325 * 1 2 3 31 31 H 1.09005 * 109.47205 * 149.98069 * 1 2 3 32 32 H 1.07993 * 119.82780 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.13828 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.32752 * 179.97438 * 5 4 3 35 35 H 1.08991 * 109.46993 * 275.71827 * 12 11 9 36 36 H 1.09002 * 109.46901 * 35.71903 * 12 11 9 37 37 H 1.08997 * 109.47030 * 155.71689 * 12 11 9 38 38 H 1.09003 * 109.46936 * 329.99772 * 13 11 9 39 39 H 1.08999 * 109.46911 * 210.00313 * 13 11 9 40 40 H 0.96705 * 113.99912 * 59.99563 * 16 14 13 41 41 H 1.08998 * 109.46979 * 60.00587 * 17 14 13 42 42 H 1.08992 * 109.47461 * 300.00292 * 17 14 13 43 43 H 0.96998 * 120.00117 * 0.02562 * 18 17 14 44 44 H 0.96997 * 119.99703 * 179.97438 * 22 21 19 45 45 H 1.08003 * 126.44710 * 180.28063 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0156 -0.0005 6 6 3.5563 -1.2039 -0.0005 7 7 3.9582 -2.4637 0.0054 8 6 2.8795 -3.2683 0.0003 9 6 2.9000 -4.7441 0.0012 10 8 1.8612 -5.3666 -0.1070 11 7 4.0703 -5.4016 0.1222 12 6 5.3295 -4.6540 0.1660 13 6 4.0832 -6.8640 0.2099 14 6 4.1882 -7.4583 -1.1960 15 1 3.3822 -7.0671 -1.8170 16 8 5.4474 -7.1029 -1.7706 17 6 4.0764 -8.9820 -1.1152 18 7 4.1764 -9.5510 -2.4615 19 6 4.1082 -10.9072 -2.6384 20 1 3.9762 -11.5570 -1.7860 21 6 4.2087 -11.4467 -3.9135 22 7 4.3700 -10.6548 -4.9524 23 14 4.1164 -13.2968 -4.1547 24 1 2.8100 -13.7965 -3.6557 25 1 4.2483 -13.6148 -5.5993 26 1 5.2167 -13.9498 -3.4011 27 6 1.7623 -2.4826 0.0000 28 7 2.1838 -1.1875 -0.0004 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6267 2.1021 -0.0004 33 1 4.1117 2.1280 -0.0010 34 1 5.3478 0.0168 -0.0014 35 1 5.6611 -4.4412 -0.8502 36 1 5.1774 -3.7173 0.7022 37 1 6.0866 -5.2473 0.6786 38 1 3.1628 -7.2078 0.6819 39 1 4.9383 -7.1847 0.8048 40 1 6.2117 -7.4189 -1.2693 41 1 3.1159 -9.2531 -0.6771 42 1 4.8823 -9.3731 -0.4944 43 1 4.2952 -8.9674 -3.2271 44 1 4.4406 -11.0319 -5.8432 45 1 0.7377 -2.8241 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717934531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:49 Heat of formation + Delta-G solvation = 32.835284 kcal Electronic energy + Delta-G solvation = -27799.046497 eV Core-core repulsion = 23819.046749 eV Total energy + Delta-G solvation = -3979.999749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.26040 -39.81204 -37.92198 -37.20307 -35.14979 -34.55921 -33.89352 -31.90199 -31.19210 -29.88757 -29.25329 -27.75413 -26.55746 -25.91181 -23.94359 -23.13302 -22.52998 -21.62245 -21.06596 -19.43611 -18.31181 -17.07968 -17.07875 -16.95748 -16.58644 -16.24906 -15.69385 -15.57572 -14.89520 -14.81948 -14.70674 -14.37060 -14.25222 -13.94685 -13.56485 -13.45278 -13.25353 -12.87668 -12.83189 -12.75344 -12.51448 -12.30628 -12.04269 -11.92334 -11.81064 -11.41929 -11.34533 -10.86273 -10.73955 -10.54793 -10.39009 -10.13325 -9.95482 -9.70442 -9.56415 -9.21051 -8.80788 -8.38496 -8.16513 -6.82766 -5.66216 -2.95385 0.21660 0.84028 1.83437 2.05558 2.97737 3.03853 3.42766 3.50022 3.53554 3.55353 3.69944 3.87558 4.22284 4.27410 4.55798 4.64725 4.68121 4.83563 4.88189 4.93065 4.97442 5.05077 5.16738 5.24458 5.28946 5.38917 5.43185 5.58007 5.64075 5.71236 5.78682 5.80424 5.88390 6.02526 6.04757 6.11749 6.27981 6.36972 6.54559 6.64725 6.70399 6.87030 7.28738 7.47475 7.76034 8.16871 8.21060 8.52129 9.63063 10.22349 10.58365 11.56221 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.002112 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.870002 B =13253.027284 C =13552.545983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.089 3.911 3 C -0.144 4.144 4 C -0.098 4.098 5 C -0.081 4.081 6 C 0.225 3.775 7 N -0.458 5.458 8 C 0.017 3.983 9 C 0.594 3.406 10 O -0.535 6.535 11 N -0.588 5.588 12 C 0.077 3.923 13 C 0.087 3.913 14 C 0.086 3.914 15 H 0.100 0.900 16 O -0.549 6.549 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.020 4.020 28 N -0.361 5.361 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.366 0.634 41 H 0.027 0.973 42 H 0.019 0.981 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 30.102 15.468 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.014 4.014 3 C -0.165 4.165 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.020 4.020 7 N -0.180 5.180 8 C -0.116 4.116 9 C 0.380 3.620 10 O -0.412 6.412 11 N -0.319 5.319 12 C -0.065 4.065 13 C -0.036 4.036 14 C 0.026 3.974 15 H 0.118 0.882 16 O -0.353 6.353 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.155 4.155 28 N -0.033 5.033 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.212 0.788 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.225 29.522 14.991 33.267 hybrid contribution -0.383 -0.884 -0.080 0.966 sum -3.608 28.638 14.911 32.489 Atomic orbital electron populations 1.20976 0.87702 1.04906 1.04118 1.20368 0.95340 0.83635 1.02025 1.20649 0.94823 0.96519 1.04484 1.21052 0.93662 0.98484 0.98946 1.20335 1.00855 0.87527 1.01416 1.21183 0.79970 0.94827 1.06005 1.71063 1.27860 0.97683 1.21397 1.20601 0.89123 0.94380 1.07468 1.16944 0.83760 0.84184 0.77065 1.90826 1.32254 1.67574 1.50553 1.47513 1.06678 1.06813 1.70891 1.22239 0.83942 0.97314 1.03044 1.22317 1.03950 0.78717 0.98637 1.22537 0.87072 0.94876 0.92914 0.88189 1.86629 1.14747 1.79536 1.54367 1.21221 0.98432 0.90468 0.90091 1.42243 1.87957 1.04684 1.02114 1.19188 1.42125 0.83334 0.92586 0.91322 1.24768 1.02978 0.97733 0.95588 1.69682 1.56631 1.33485 0.98093 0.86253 0.77786 0.85386 0.76655 1.21297 1.21710 1.21318 1.22531 1.01280 0.80148 1.11524 1.42738 1.08915 1.05593 1.46093 0.89533 0.88990 0.90333 0.83145 0.83811 0.82874 0.92088 0.88121 0.92197 0.88896 0.89957 0.78790 0.95512 0.96300 0.77656 0.93506 0.78875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.84 36.01 0.35 -0.12 16 2 C 0.09 0.61 6.78 -81.63 -0.55 0.05 16 3 C -0.14 -0.71 9.58 -39.91 -0.38 -1.09 16 4 C -0.10 -0.50 10.06 -39.54 -0.40 -0.90 16 5 C -0.08 -0.61 10.11 -39.30 -0.40 -1.01 16 6 C 0.22 2.47 7.79 -156.05 -1.22 1.25 16 7 N -0.46 -5.98 7.76 -9.35 -0.07 -6.05 16 8 C 0.02 0.24 6.65 -83.45 -0.55 -0.32 16 9 C 0.59 9.63 7.67 -12.44 -0.10 9.54 16 10 O -0.54 -10.06 16.49 5.29 0.09 -9.97 16 11 N -0.59 -8.68 2.84 -182.79 -0.52 -9.20 16 12 C 0.08 0.96 9.28 59.85 0.56 1.51 16 13 C 0.09 1.28 5.07 -4.04 -0.02 1.26 16 14 C 0.09 1.59 3.30 -26.73 -0.09 1.50 16 15 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 16 O -0.55 -10.10 12.64 -35.23 -0.45 -10.54 16 17 C 0.13 2.70 5.92 -4.04 -0.02 2.68 16 18 N -0.73 -19.79 5.49 -59.91 -0.33 -20.11 16 19 C -0.24 -7.12 9.99 -15.06 -0.15 -7.27 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -29.71 13.06 55.49 0.72 -28.99 16 23 Si 0.91 23.29 29.55 -169.99 -5.02 18.27 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.02 -0.23 10.79 -16.21 -0.17 -0.41 16 28 N -0.36 -3.63 2.93 -58.17 -0.17 -3.80 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.18 8.07 -51.93 -0.42 -0.24 16 31 H 0.08 0.36 7.46 -51.93 -0.39 -0.03 16 32 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.23 5.22 -51.93 -0.27 0.96 16 37 H 0.06 0.61 7.83 -51.93 -0.41 0.21 16 38 H 0.09 1.42 7.48 -51.93 -0.39 1.03 16 39 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 40 H 0.37 5.41 9.05 45.56 0.41 5.82 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.39 11.46 7.54 -40.82 -0.31 11.16 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.19 1.87 7.77 -52.48 -0.41 1.47 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -38.14 379.73 -8.78 -46.92 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.51 Total: 11.60 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.24 Total: 6.15 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.37 Total: -68.15 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.36 Total: -20.51 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.14 -8.78 -46.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717934531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.756 kcal (2) G-P(sol) polarization free energy of solvation -38.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds