Wall clock time and date at job start Tue Mar 31 2020 16:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34847 * 119.67912 * 2 1 4 4 C 1.40569 * 120.34184 * 180.02562 * 3 2 1 5 5 C 1.35901 * 119.73109 * 359.97438 * 4 3 2 6 6 C 1.41190 * 119.34306 * 0.02562 * 5 4 3 7 7 N 1.32236 * 132.04352 * 180.34634 * 6 5 4 8 8 C 1.34579 * 109.02531 * 180.08721 * 7 6 5 9 9 C 1.47590 * 125.92262 * 179.85752 * 8 7 6 10 10 O 1.21588 * 120.00191 * 185.62680 * 9 8 7 11 11 N 1.34780 * 119.99252 * 5.62851 * 9 8 7 12 12 C 1.46499 * 120.00528 * 356.06665 * 11 9 8 13 13 C 1.46509 * 119.99486 * 176.06800 * 11 9 8 14 14 C 1.52995 * 109.47234 * 89.99832 * 13 11 9 15 15 H 1.09006 * 109.47183 * 305.00346 * 14 13 11 16 16 O 1.42898 * 109.47128 * 64.99952 * 14 13 11 17 17 C 1.52998 * 109.47141 * 184.99807 * 14 13 11 18 18 N 1.46500 * 109.46946 * 179.97438 * 17 14 13 19 19 C 1.36938 * 119.99649 * 179.72554 * 18 17 14 20 20 H 1.07997 * 120.00254 * 0.27794 * 19 18 17 21 21 C 1.38816 * 119.99664 * 180.27839 * 19 18 17 22 22 N 1.31622 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47200 * 60.00560 * 23 21 19 25 25 H 1.48505 * 109.46872 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47307 * 299.99981 * 23 21 19 27 27 C 1.36582 * 108.15904 * 359.59335 * 8 7 6 28 28 N 1.36193 * 107.09313 * 0.23976 * 27 8 7 29 29 H 1.08997 * 109.47733 * 269.97964 * 1 2 3 30 30 H 1.08999 * 109.47073 * 29.98325 * 1 2 3 31 31 H 1.09005 * 109.47205 * 149.98069 * 1 2 3 32 32 H 1.07993 * 119.82780 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.13828 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.32752 * 179.97438 * 5 4 3 35 35 H 1.08991 * 109.46993 * 275.71827 * 12 11 9 36 36 H 1.09002 * 109.46901 * 35.71903 * 12 11 9 37 37 H 1.08997 * 109.47030 * 155.71689 * 12 11 9 38 38 H 1.09003 * 109.46936 * 329.99772 * 13 11 9 39 39 H 1.08999 * 109.46911 * 210.00313 * 13 11 9 40 40 H 0.96705 * 113.99912 * 59.99563 * 16 14 13 41 41 H 1.08998 * 109.46979 * 60.00587 * 17 14 13 42 42 H 1.08992 * 109.47461 * 300.00292 * 17 14 13 43 43 H 0.96998 * 120.00117 * 0.02562 * 18 17 14 44 44 H 0.96997 * 119.99703 * 179.97438 * 22 21 19 45 45 H 1.08003 * 126.44710 * 180.28063 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0156 -0.0005 6 6 3.5563 -1.2039 -0.0005 7 7 3.9582 -2.4637 0.0054 8 6 2.8795 -3.2683 0.0003 9 6 2.9000 -4.7441 0.0012 10 8 1.8612 -5.3666 -0.1070 11 7 4.0703 -5.4016 0.1222 12 6 5.3295 -4.6540 0.1660 13 6 4.0832 -6.8640 0.2099 14 6 4.1882 -7.4583 -1.1960 15 1 3.3822 -7.0671 -1.8170 16 8 5.4474 -7.1029 -1.7706 17 6 4.0764 -8.9820 -1.1152 18 7 4.1764 -9.5510 -2.4615 19 6 4.1082 -10.9072 -2.6384 20 1 3.9762 -11.5570 -1.7860 21 6 4.2087 -11.4467 -3.9135 22 7 4.3700 -10.6548 -4.9524 23 14 4.1164 -13.2968 -4.1547 24 1 2.8100 -13.7965 -3.6557 25 1 4.2483 -13.6148 -5.5993 26 1 5.2167 -13.9498 -3.4011 27 6 1.7623 -2.4826 0.0000 28 7 2.1838 -1.1875 -0.0004 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6267 2.1021 -0.0004 33 1 4.1117 2.1280 -0.0010 34 1 5.3478 0.0168 -0.0014 35 1 5.6611 -4.4412 -0.8502 36 1 5.1774 -3.7173 0.7022 37 1 6.0866 -5.2473 0.6786 38 1 3.1628 -7.2078 0.6819 39 1 4.9383 -7.1847 0.8048 40 1 6.2117 -7.4189 -1.2693 41 1 3.1159 -9.2531 -0.6771 42 1 4.8823 -9.3731 -0.4944 43 1 4.2952 -8.9674 -3.2271 44 1 4.4406 -11.0319 -5.8432 45 1 0.7377 -2.8241 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717934531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:47 Heat of formation + Delta-G solvation = 5.053849 kcal Electronic energy + Delta-G solvation = -27800.251191 eV Core-core repulsion = 23819.046749 eV Total energy + Delta-G solvation = -3981.204442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.99610 -40.99056 -38.95524 -38.33532 -36.48190 -35.82651 -35.15720 -33.27005 -32.52148 -31.02981 -30.39580 -28.21337 -27.87286 -27.29370 -25.40038 -24.02549 -23.74141 -22.73807 -22.32616 -20.48609 -19.25132 -19.08229 -17.97800 -17.87543 -17.56913 -17.32330 -16.81737 -16.57685 -16.46227 -16.15011 -15.95959 -15.35177 -15.31589 -15.02071 -14.81188 -14.49591 -14.37892 -14.16883 -13.84773 -13.71764 -13.59262 -13.31215 -13.24190 -12.99575 -12.72980 -12.62420 -12.47214 -12.35428 -12.22448 -12.07611 -12.03414 -11.82842 -11.53556 -11.20090 -10.97954 -10.88816 -9.99178 -9.56872 -9.03362 -8.86302 -7.95060 -5.25982 -0.37763 0.18017 0.92816 1.36263 1.45285 1.50296 1.56322 1.95147 2.22055 2.52079 2.55296 2.95691 3.28661 3.35383 3.47644 3.61053 3.70140 3.77511 3.94363 4.04910 4.15473 4.18425 4.19632 4.36397 4.50976 4.52479 4.55827 4.60654 4.62734 4.66798 4.71498 4.83762 4.90676 4.99372 5.08030 5.14108 5.18712 5.24719 5.34959 5.45443 5.56733 5.57847 5.93756 6.24588 6.25324 6.54429 6.88311 7.01848 7.30836 8.06556 8.30381 9.28475 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.002112 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.870002 B =13253.027284 C =13552.545983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.065 3.935 3 C -0.133 4.133 4 C -0.073 4.073 5 C -0.110 4.110 6 C 0.214 3.786 7 N -0.485 5.485 8 C -0.016 4.016 9 C 0.586 3.414 10 O -0.575 6.575 11 N -0.589 5.589 12 C 0.083 3.917 13 C 0.096 3.904 14 C 0.103 3.897 15 H 0.060 0.940 16 O -0.563 6.563 17 C 0.126 3.874 18 N -0.742 5.742 19 C -0.249 4.249 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.982 3.018 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.273 1.273 27 C -0.024 4.024 28 N -0.363 5.363 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.167 0.833 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.384 0.616 41 H 0.026 0.974 42 H 0.043 0.957 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 32.364 17.104 36.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.153 4.153 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.031 4.031 7 N -0.207 5.207 8 C -0.148 4.148 9 C 0.374 3.626 10 O -0.455 6.455 11 N -0.318 5.318 12 C -0.059 4.059 13 C -0.027 4.027 14 C 0.043 3.957 15 H 0.078 0.922 16 O -0.369 6.369 17 C -0.002 4.002 18 N -0.385 5.385 19 C -0.381 4.381 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.810 3.190 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.199 1.199 27 C -0.161 4.161 28 N -0.034 5.034 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.209 0.791 33 H 0.201 0.799 34 H 0.184 0.816 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.232 0.768 41 H 0.044 0.956 42 H 0.061 0.939 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.797 31.804 16.694 36.028 hybrid contribution -0.518 -1.306 -0.547 1.508 sum -3.316 30.498 16.147 34.668 Atomic orbital electron populations 1.21074 0.85885 1.05612 1.04944 1.21105 0.96888 0.83061 1.02665 1.21269 0.95091 0.97211 1.01679 1.21608 0.93956 0.99049 0.95031 1.20672 1.01773 0.87018 1.03509 1.21766 0.80796 0.95220 1.05307 1.70926 1.27882 0.98670 1.23268 1.20388 0.90602 0.93487 1.10300 1.17385 0.83606 0.85343 0.76265 1.90777 1.33531 1.68660 1.52516 1.47624 1.07171 1.06813 1.70174 1.22281 0.83372 0.97867 1.02384 1.22207 1.05348 0.78851 0.96310 1.22195 0.86193 0.92951 0.94387 0.92150 1.86596 1.15331 1.79624 1.55366 1.21411 0.98933 0.92231 0.87589 1.42471 1.88104 1.04092 1.03837 1.19670 1.40818 0.84566 0.93048 0.90223 1.25721 1.03448 1.02804 0.95351 1.69872 1.58455 1.35608 0.98352 0.85095 0.78299 0.79388 0.76247 1.20332 1.22150 1.19855 1.22601 1.01118 0.80968 1.11385 1.42870 1.08898 1.05909 1.45755 0.88584 0.86349 0.91548 0.79115 0.79894 0.81557 0.93760 0.87814 0.89471 0.89496 0.86115 0.76761 0.95576 0.93871 0.79538 0.94014 0.78072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.84 71.24 0.70 -0.01 16 2 C 0.06 0.75 6.78 41.02 0.28 1.03 16 3 C -0.13 -0.79 9.58 22.06 0.21 -0.57 16 4 C -0.07 -0.46 10.06 22.30 0.22 -0.24 16 5 C -0.11 -1.46 10.11 22.45 0.23 -1.23 16 6 C 0.21 4.70 7.79 134.21 1.05 5.74 16 7 N -0.49 -13.21 7.76 -183.49 -1.42 -14.63 16 8 C -0.02 -0.48 6.65 40.80 0.27 -0.21 16 9 C 0.59 20.25 7.67 86.71 0.66 20.91 16 10 O -0.57 -23.20 16.49 -3.99 -0.07 -23.26 16 11 N -0.59 -17.84 2.84 -850.47 -2.41 -20.25 16 12 C 0.08 2.05 9.28 127.77 1.19 3.24 16 13 C 0.10 2.83 5.07 86.38 0.44 3.26 16 14 C 0.10 3.90 3.30 30.59 0.10 4.00 16 15 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 16 O -0.56 -20.91 12.64 -148.98 -1.88 -22.79 16 17 C 0.13 5.38 5.92 86.38 0.51 5.89 16 18 N -0.74 -41.29 5.49 -343.46 -1.89 -43.18 16 19 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -63.58 13.06 21.65 0.28 -63.30 16 23 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 27 C -0.02 -0.61 10.79 83.63 0.90 0.30 16 28 N -0.36 -7.24 2.93 -337.95 -0.99 -8.23 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.12 0.06 8.07 -2.39 -0.02 0.04 16 31 H 0.07 0.58 7.46 -2.38 -0.02 0.56 16 32 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 33 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 2.58 5.22 -2.39 -0.01 2.57 16 37 H 0.09 1.64 7.83 -2.39 -0.02 1.62 16 38 H 0.09 2.69 7.48 -2.39 -0.02 2.67 16 39 H 0.12 2.61 7.86 -2.39 -0.02 2.59 16 40 H 0.38 10.96 9.05 -74.05 -0.67 10.29 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.37 22.81 7.54 -92.71 -0.70 22.11 16 44 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.20 4.30 7.77 -2.91 -0.02 4.28 16 Total: -1.00 -87.08 379.73 1.38 -85.70 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.34 Total: 36.01 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 8.07 Total: 23.68 kcal Atomic # 7 Polarization: -143.16 SS G_CDS: -6.43 Total: -149.59 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.95 Total: -46.05 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -87.08 1.38 -85.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717934531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.758 kcal (2) G-P(sol) polarization free energy of solvation -87.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds