Wall clock time and date at job start Tue Mar 31 2020 16:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36330 * 119.74561 * 2 1 4 4 C 1.47522 * 120.16463 * 359.95079 * 3 2 1 5 5 O 1.21599 * 120.00129 * 54.13194 * 4 3 2 6 6 N 1.34772 * 120.00164 * 234.13093 * 4 3 2 7 7 C 1.46499 * 119.99973 * 5.87115 * 6 4 3 8 8 C 1.53001 * 109.46923 * 84.12011 * 7 6 4 9 9 O 1.42901 * 109.47257 * 65.00137 * 8 7 6 10 10 C 1.46501 * 120.00198 * 185.87917 * 6 4 3 11 11 C 1.52992 * 109.47228 * 89.99890 * 10 6 4 12 12 N 1.46501 * 109.47228 * 180.02562 * 11 10 6 13 13 C 1.36937 * 120.00569 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99704 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00283 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99927 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47103 * 120.00169 * 17 15 13 20 20 H 1.48499 * 109.47165 * 239.99954 * 17 15 13 21 21 C 1.46495 * 119.66648 * 179.97438 * 3 2 1 22 22 C 1.35536 * 119.04824 * 359.97438 * 21 3 2 23 23 C 1.41228 * 119.42518 * 359.97438 * 22 21 3 24 24 C 1.37906 * 132.97156 * 180.02562 * 23 22 21 25 25 N 1.33450 * 107.66417 * 179.72326 * 24 23 22 26 26 C 1.30744 * 109.92938 * 0.43124 * 25 24 23 27 27 N 1.35920 * 109.21139 * 359.56251 * 26 25 24 28 28 H 1.08996 * 109.47114 * 266.50816 * 1 2 3 29 29 H 1.09000 * 109.47099 * 26.51160 * 1 2 3 30 30 H 1.09004 * 109.46332 * 146.50938 * 1 2 3 31 31 H 1.08995 * 109.47481 * 204.12048 * 7 6 4 32 32 H 1.09001 * 109.47663 * 324.12581 * 7 6 4 33 33 H 1.09006 * 109.47569 * 185.00407 * 8 7 6 34 34 H 1.09009 * 109.47433 * 305.00018 * 8 7 6 35 35 H 0.96702 * 114.00198 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46807 * 210.00107 * 10 6 4 37 37 H 1.09000 * 109.46755 * 329.99142 * 10 6 4 38 38 H 1.09001 * 109.47404 * 299.99851 * 11 10 6 39 39 H 1.09000 * 109.47863 * 59.99931 * 11 10 6 40 40 H 0.97005 * 119.99503 * 359.97438 * 12 11 10 41 41 H 0.97006 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.47477 * 180.02562 * 21 3 2 43 43 H 1.08001 * 120.28721 * 179.97438 * 22 21 3 44 44 H 1.08009 * 126.16921 * 0.02562 * 24 23 22 45 45 H 1.08006 * 125.39440 * 179.82668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1835 1.1837 0.0000 4 6 1.4439 2.4601 -0.0011 5 8 0.6045 2.6772 0.8516 6 7 1.6984 3.3856 -0.9471 7 6 2.6141 3.0754 -2.0478 8 6 1.8528 2.3403 -3.1527 9 8 0.8687 3.2114 -3.7138 10 6 1.0596 4.7020 -0.8747 11 6 1.9442 5.6546 -0.0680 12 7 1.3051 6.9708 0.0049 13 6 1.9163 7.9923 0.6818 14 1 2.8698 7.8277 1.1615 15 6 1.3110 9.2395 0.7503 16 7 0.1492 9.4402 0.1652 17 14 2.1452 10.6331 1.6731 18 1 3.4324 10.1530 2.2365 19 1 2.4030 11.7598 0.7406 20 1 1.2634 11.0947 2.7752 21 6 3.6484 1.1816 0.0006 22 6 4.3049 -0.0041 0.0016 23 6 3.5647 -1.2069 0.0027 24 6 3.9315 -2.5363 0.0043 25 7 2.8134 -3.2648 0.0108 26 6 1.7690 -2.4783 0.0042 27 7 2.1838 -1.1840 0.0026 28 1 -0.3633 -0.0626 1.0257 29 1 -0.3633 0.9196 -0.4587 30 1 -0.3632 -0.8571 -0.5671 31 1 3.0296 4.0008 -2.4466 32 1 3.4223 2.4427 -1.6808 33 1 2.5505 2.0312 -3.9311 34 1 1.3632 1.4611 -2.7337 35 1 0.3464 2.8105 -4.4220 36 1 0.9250 5.0964 -1.8819 37 1 0.0885 4.6083 -0.3885 38 1 2.0788 5.2602 0.9392 39 1 2.9153 5.7483 -0.5542 40 1 0.4489 7.1187 -0.4264 41 1 -0.2741 10.3117 0.2135 42 1 4.1974 2.1117 0.0010 43 1 5.3846 -0.0290 0.0016 44 1 4.9415 -2.9189 0.0055 45 1 0.7396 -2.8053 0.0045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724673774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:13 Heat of formation + Delta-G solvation = 28.650288 kcal Electronic energy + Delta-G solvation = -28693.589632 eV Core-core repulsion = 24713.408408 eV Total energy + Delta-G solvation = -3980.181224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.11205 -40.31015 -37.54529 -37.17492 -35.71870 -34.56626 -34.14580 -32.11922 -31.31902 -29.58211 -29.25976 -28.15471 -27.08404 -24.56053 -23.54996 -23.16202 -22.82311 -21.54742 -21.40236 -19.50348 -18.46104 -17.75242 -17.28558 -17.11313 -16.51868 -16.39059 -16.06248 -15.88761 -14.99561 -14.68597 -14.52424 -14.31361 -14.05109 -13.91736 -13.86967 -13.64830 -13.51481 -13.26090 -13.13604 -12.84474 -12.66927 -12.54162 -11.94078 -11.77093 -11.66246 -11.25976 -10.99633 -10.93232 -10.89028 -10.67017 -10.63446 -10.33469 -10.08323 -9.97574 -9.72528 -9.47389 -8.86769 -8.60007 -7.87263 -6.92008 -5.74923 -3.04186 0.38103 0.69605 2.06330 2.43750 2.74746 2.90956 3.07587 3.44738 3.50129 3.52551 3.88209 4.00425 4.12272 4.21687 4.33400 4.42774 4.57277 4.62307 4.84106 4.87663 4.92778 5.01466 5.08381 5.11439 5.14695 5.25879 5.34961 5.51815 5.54337 5.59100 5.62077 5.72241 5.76539 5.87319 6.04218 6.12413 6.17384 6.21545 6.50050 6.71530 6.76298 6.88814 7.32521 7.44418 7.49700 7.71435 8.06861 8.43419 9.54476 10.10807 10.45856 11.48016 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.002676 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.399960 B =10461.864926 C =10878.106983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.138 3.862 3 C -0.144 4.144 4 C 0.567 3.433 5 O -0.519 6.519 6 N -0.586 5.586 7 C 0.099 3.901 8 C 0.061 3.939 9 O -0.561 6.561 10 C 0.111 3.889 11 C 0.143 3.857 12 N -0.729 5.729 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.098 4.098 22 C -0.082 4.082 23 C 0.008 3.992 24 C -0.020 4.020 25 N -0.453 5.453 26 C 0.149 3.851 27 N -0.371 5.371 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.377 0.623 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.182 0.818 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -25.035 -7.666 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.035 3.965 3 C -0.150 4.150 4 C 0.353 3.647 5 O -0.395 6.395 6 N -0.318 5.318 7 C -0.024 4.024 8 C -0.018 4.018 9 O -0.366 6.366 10 C -0.011 4.011 11 C 0.014 3.986 12 N -0.374 5.374 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.739 3.261 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.100 4.100 24 C -0.173 4.173 25 N -0.166 5.166 26 C -0.126 4.126 27 N -0.044 5.044 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.199 0.801 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.532 -25.315 -6.661 26.755 hybrid contribution 0.092 1.287 -0.064 1.292 sum 5.624 -24.028 -6.724 25.577 Atomic orbital electron populations 1.21029 0.86950 1.04701 1.04915 1.20132 0.94990 0.82897 0.98492 1.20333 0.94117 0.92413 1.08182 1.17714 0.82368 0.82750 0.81895 1.90871 1.32735 1.78722 1.37132 1.47686 1.45812 1.14268 1.24051 1.21922 0.91833 1.02328 0.86319 1.22639 0.91182 0.92468 0.95534 1.86593 1.51932 1.42014 1.56069 1.21786 0.97249 0.79921 1.02122 1.20919 0.94552 0.86492 0.96635 1.42203 1.24454 1.05842 1.64909 1.19238 1.02364 0.89574 1.25655 0.91176 1.24752 0.97200 0.97807 1.01261 1.69676 1.16891 1.22946 1.48595 0.86097 0.78453 0.82415 0.79108 1.20570 1.21844 1.21817 1.22085 0.91233 0.98937 0.99565 1.20416 1.00244 0.88769 1.00687 1.19742 0.82350 0.97128 1.10802 1.22577 0.98101 0.86997 1.09654 1.69973 0.97912 1.33012 1.15702 1.25099 1.00597 0.76422 1.10492 1.42885 1.07529 1.06465 1.47485 0.88581 0.88745 0.90522 0.88466 0.88622 0.92721 0.94106 0.77641 0.89397 0.89678 0.96197 0.96471 0.78187 0.93531 0.83472 0.82968 0.80116 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.96 36.01 0.32 -0.73 16 2 C 0.14 1.44 6.82 -81.26 -0.55 0.88 16 3 C -0.14 -1.64 4.90 -103.48 -0.51 -2.15 16 4 C 0.57 8.17 5.97 -12.48 -0.07 8.09 16 5 O -0.52 -9.48 15.43 5.28 0.08 -9.40 16 6 N -0.59 -8.05 2.43 -174.93 -0.43 -8.47 16 7 C 0.10 1.01 5.57 -4.04 -0.02 0.99 16 8 C 0.06 0.53 7.35 37.16 0.27 0.80 16 9 O -0.56 -5.77 13.19 -35.23 -0.46 -6.23 16 10 C 0.11 1.93 5.50 -4.05 -0.02 1.90 16 11 C 0.14 2.99 6.58 -4.05 -0.03 2.97 16 12 N -0.73 -19.11 5.60 -59.91 -0.34 -19.44 16 13 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 14 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 17 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 C -0.10 -0.90 7.86 -37.22 -0.29 -1.19 16 22 C -0.08 -0.65 10.09 -39.41 -0.40 -1.05 16 23 C 0.01 0.08 6.78 -84.02 -0.57 -0.49 16 24 C -0.02 -0.19 12.00 -16.97 -0.20 -0.40 16 25 N -0.45 -4.93 11.19 -13.78 -0.15 -5.09 16 26 C 0.15 1.39 12.12 -89.37 -1.08 0.30 16 27 N -0.37 -3.72 2.94 -57.74 -0.17 -3.89 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.98 6.54 -51.93 -0.34 0.64 16 30 H 0.08 0.46 7.60 -51.93 -0.39 0.07 16 31 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 32 H 0.10 0.77 4.47 -51.93 -0.23 0.53 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.35 8.00 -51.92 -0.42 -0.06 16 35 H 0.38 2.22 9.12 45.56 0.42 2.64 16 36 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 37 H 0.08 1.64 7.35 -51.93 -0.38 1.26 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.15 1.16 7.39 -52.49 -0.39 0.77 16 43 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.18 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.21 1.22 7.82 -52.48 -0.41 0.81 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -37.17 377.19 -8.85 -46.01 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.36 Total: 8.58 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -3.40 Total: 2.45 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.36 Total: -64.84 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.38 Total: -15.63 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.17 -8.85 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724673774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.663 kcal (2) G-P(sol) polarization free energy of solvation -37.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds