Wall clock time and date at job start Tue Mar 31 2020 16:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36330 * 119.74561 * 2 1 4 4 C 1.47522 * 120.16463 * 359.95079 * 3 2 1 5 5 O 1.21599 * 120.00129 * 54.13194 * 4 3 2 6 6 N 1.34772 * 120.00164 * 234.13093 * 4 3 2 7 7 C 1.46499 * 119.99973 * 5.87115 * 6 4 3 8 8 C 1.53001 * 109.46923 * 84.12011 * 7 6 4 9 9 O 1.42901 * 109.47257 * 65.00137 * 8 7 6 10 10 C 1.46501 * 120.00198 * 185.87917 * 6 4 3 11 11 C 1.52992 * 109.47228 * 89.99890 * 10 6 4 12 12 N 1.46501 * 109.47228 * 180.02562 * 11 10 6 13 13 C 1.36937 * 120.00569 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99704 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00283 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99927 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47202 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47103 * 120.00169 * 17 15 13 20 20 H 1.48499 * 109.47165 * 239.99954 * 17 15 13 21 21 C 1.46495 * 119.66648 * 179.97438 * 3 2 1 22 22 C 1.35536 * 119.04824 * 359.97438 * 21 3 2 23 23 C 1.41228 * 119.42518 * 359.97438 * 22 21 3 24 24 C 1.37906 * 132.97156 * 180.02562 * 23 22 21 25 25 N 1.33450 * 107.66417 * 179.72326 * 24 23 22 26 26 C 1.30744 * 109.92938 * 0.43124 * 25 24 23 27 27 N 1.35920 * 109.21139 * 359.56251 * 26 25 24 28 28 H 1.08996 * 109.47114 * 266.50816 * 1 2 3 29 29 H 1.09000 * 109.47099 * 26.51160 * 1 2 3 30 30 H 1.09004 * 109.46332 * 146.50938 * 1 2 3 31 31 H 1.08995 * 109.47481 * 204.12048 * 7 6 4 32 32 H 1.09001 * 109.47663 * 324.12581 * 7 6 4 33 33 H 1.09006 * 109.47569 * 185.00407 * 8 7 6 34 34 H 1.09009 * 109.47433 * 305.00018 * 8 7 6 35 35 H 0.96702 * 114.00198 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46807 * 210.00107 * 10 6 4 37 37 H 1.09000 * 109.46755 * 329.99142 * 10 6 4 38 38 H 1.09001 * 109.47404 * 299.99851 * 11 10 6 39 39 H 1.09000 * 109.47863 * 59.99931 * 11 10 6 40 40 H 0.97005 * 119.99503 * 359.97438 * 12 11 10 41 41 H 0.97006 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.47477 * 180.02562 * 21 3 2 43 43 H 1.08001 * 120.28721 * 179.97438 * 22 21 3 44 44 H 1.08009 * 126.16921 * 0.02562 * 24 23 22 45 45 H 1.08006 * 125.39440 * 179.82668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1835 1.1837 0.0000 4 6 1.4439 2.4601 -0.0011 5 8 0.6045 2.6772 0.8516 6 7 1.6984 3.3856 -0.9471 7 6 2.6141 3.0754 -2.0478 8 6 1.8528 2.3403 -3.1527 9 8 0.8687 3.2114 -3.7138 10 6 1.0596 4.7020 -0.8747 11 6 1.9442 5.6546 -0.0680 12 7 1.3051 6.9708 0.0049 13 6 1.9163 7.9923 0.6818 14 1 2.8698 7.8277 1.1615 15 6 1.3110 9.2395 0.7503 16 7 0.1492 9.4402 0.1652 17 14 2.1452 10.6331 1.6731 18 1 3.4324 10.1530 2.2365 19 1 2.4030 11.7598 0.7406 20 1 1.2634 11.0947 2.7752 21 6 3.6484 1.1816 0.0006 22 6 4.3049 -0.0041 0.0016 23 6 3.5647 -1.2069 0.0027 24 6 3.9315 -2.5363 0.0043 25 7 2.8134 -3.2648 0.0108 26 6 1.7690 -2.4783 0.0042 27 7 2.1838 -1.1840 0.0026 28 1 -0.3633 -0.0626 1.0257 29 1 -0.3633 0.9196 -0.4587 30 1 -0.3632 -0.8571 -0.5671 31 1 3.0296 4.0008 -2.4466 32 1 3.4223 2.4427 -1.6808 33 1 2.5505 2.0312 -3.9311 34 1 1.3632 1.4611 -2.7337 35 1 0.3464 2.8105 -4.4220 36 1 0.9250 5.0964 -1.8819 37 1 0.0885 4.6083 -0.3885 38 1 2.0788 5.2602 0.9392 39 1 2.9153 5.7483 -0.5542 40 1 0.4489 7.1187 -0.4264 41 1 -0.2741 10.3117 0.2135 42 1 4.1974 2.1117 0.0010 43 1 5.3846 -0.0290 0.0016 44 1 4.9415 -2.9189 0.0055 45 1 0.7396 -2.8053 0.0045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724673774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:10 Heat of formation + Delta-G solvation = 2.485332 kcal Electronic energy + Delta-G solvation = -28694.724229 eV Core-core repulsion = 24713.408408 eV Total energy + Delta-G solvation = -3981.315821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -43.82542 -41.38761 -38.39469 -38.05509 -37.09780 -36.00810 -35.01731 -33.57728 -32.61277 -30.80787 -29.98233 -29.24952 -28.19699 -26.00178 -24.78731 -24.15748 -23.57106 -23.10999 -22.13803 -20.57152 -19.39579 -19.08737 -18.49460 -18.07708 -17.62717 -17.16258 -16.97526 -16.88383 -16.46780 -15.79465 -15.64347 -15.45841 -15.13747 -15.06345 -14.96339 -14.72856 -14.57265 -14.43724 -14.34349 -13.86013 -13.63236 -13.36316 -13.08726 -12.94241 -12.76610 -12.63265 -12.54635 -12.49905 -12.18771 -12.08916 -11.88311 -11.64616 -11.38503 -11.20853 -11.00266 -10.93092 -10.28649 -9.78504 -9.07322 -8.56283 -7.98042 -5.29047 -0.38070 -0.00272 1.24903 1.45473 1.47925 1.48833 1.58143 1.87840 2.01246 2.30148 2.55261 3.13348 3.29518 3.35441 3.36473 3.57316 3.67551 3.77902 3.88123 4.04690 4.05826 4.07561 4.21463 4.26691 4.31623 4.38326 4.39081 4.46520 4.54361 4.55142 4.61443 4.67332 4.79004 4.92397 4.93195 5.01856 5.07341 5.10491 5.39661 5.45737 5.48386 5.56587 6.04718 6.23066 6.25522 6.79645 6.89550 6.94707 7.29277 8.00838 8.25968 9.25679 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.002676 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.399960 B =10461.864926 C =10878.106983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.140 3.860 3 C -0.156 4.156 4 C 0.568 3.432 5 O -0.568 6.568 6 N -0.583 5.583 7 C 0.092 3.908 8 C 0.064 3.936 9 O -0.588 6.588 10 C 0.131 3.869 11 C 0.149 3.851 12 N -0.743 5.743 13 C -0.248 4.248 14 H 0.075 0.925 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.978 3.022 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.293 1.293 21 C -0.112 4.112 22 C -0.063 4.063 23 C -0.012 4.012 24 C -0.021 4.021 25 N -0.481 5.481 26 C 0.150 3.850 27 N -0.377 5.377 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.394 0.606 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.003 0.997 39 H 0.032 0.968 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.159 0.841 43 H 0.187 0.813 44 H 0.206 0.794 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -26.625 -8.240 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.036 3.964 3 C -0.162 4.162 4 C 0.357 3.643 5 O -0.447 6.447 6 N -0.313 5.313 7 C -0.030 4.030 8 C -0.015 4.015 9 O -0.397 6.397 10 C 0.008 3.992 11 C 0.022 3.978 12 N -0.386 5.386 13 C -0.380 4.380 14 H 0.093 0.907 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.220 1.220 21 C -0.133 4.133 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.174 4.174 25 N -0.195 5.195 26 C -0.124 4.124 27 N -0.050 5.050 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.050 0.950 40 H 0.207 0.793 41 H 0.062 0.938 42 H 0.177 0.823 43 H 0.204 0.796 44 H 0.222 0.778 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.717 -26.958 -7.272 28.969 hybrid contribution -0.561 1.620 0.093 1.717 sum 7.156 -25.338 -7.179 27.291 Atomic orbital electron populations 1.21019 0.86399 1.05032 1.04941 1.20174 0.95437 0.82919 0.97832 1.20107 0.95156 0.90938 1.10043 1.18161 0.81669 0.83632 0.80887 1.90840 1.35007 1.79888 1.39005 1.47676 1.45942 1.12647 1.25040 1.22259 0.92012 1.02994 0.85698 1.22651 0.91373 0.91742 0.95704 1.86541 1.52733 1.43300 1.57079 1.21295 0.95609 0.81277 1.01054 1.20966 0.95467 0.85043 0.96347 1.42403 1.24285 1.07325 1.64618 1.19626 1.02536 0.90406 1.25384 0.90698 1.25641 0.98017 1.00439 1.02613 1.69834 1.18442 1.23406 1.50205 0.85011 0.77839 0.78959 0.77544 1.18979 1.21498 1.22018 1.22160 0.89991 1.00056 1.01061 1.20773 1.01733 0.87473 0.98264 1.20135 0.82450 0.97888 1.11446 1.23069 0.98908 0.86907 1.08469 1.70012 0.98776 1.33792 1.16890 1.25742 1.01641 0.76046 1.09012 1.42969 1.07846 1.06391 1.47752 0.89041 0.90664 0.87514 0.88759 0.86093 0.89794 0.94100 0.75630 0.89103 0.92179 0.97904 0.95015 0.79325 0.93807 0.82335 0.79562 0.77763 0.74496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.96 71.24 0.64 -1.39 16 2 C 0.14 2.77 6.82 41.41 0.28 3.05 16 3 C -0.16 -3.42 4.90 -19.12 -0.09 -3.52 16 4 C 0.57 16.66 5.97 86.69 0.52 17.18 16 5 O -0.57 -21.78 15.43 -4.03 -0.06 -21.85 16 6 N -0.58 -16.05 2.43 -825.60 -2.01 -18.06 16 7 C 0.09 1.74 5.57 86.38 0.48 2.22 16 8 C 0.06 1.00 7.35 71.98 0.53 1.52 16 9 O -0.59 -11.53 13.19 -148.98 -1.96 -13.49 16 10 C 0.13 4.69 5.50 86.38 0.48 5.17 16 11 C 0.15 6.40 6.58 86.38 0.57 6.97 16 12 N -0.74 -39.85 5.60 -343.46 -1.92 -41.78 16 13 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 15 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 16 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 17 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 21 C -0.11 -1.83 7.86 23.80 0.19 -1.64 16 22 C -0.06 -0.82 10.09 22.38 0.23 -0.60 16 23 C -0.01 -0.20 6.78 38.81 0.26 0.06 16 24 C -0.02 -0.35 12.00 84.37 1.01 0.66 16 25 N -0.48 -9.47 11.19 -197.50 -2.21 -11.68 16 26 C 0.15 2.48 12.12 179.91 2.18 4.66 16 27 N -0.38 -6.83 2.94 -336.60 -0.99 -7.82 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.61 6.54 -2.39 -0.02 1.60 16 30 H 0.11 1.11 7.60 -2.38 -0.02 1.09 16 31 H 0.09 1.86 8.03 -2.39 -0.02 1.84 16 32 H 0.12 1.67 4.47 -2.39 -0.01 1.66 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.04 0.64 8.00 -2.38 -0.02 0.62 16 35 H 0.39 4.22 9.12 -74.06 -0.68 3.54 16 36 H 0.09 3.20 7.69 -2.39 -0.02 3.18 16 37 H 0.06 2.45 7.35 -2.39 -0.02 2.44 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.37 21.24 7.67 -92.70 -0.71 20.53 16 41 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 42 H 0.16 2.14 7.39 -2.91 -0.02 2.12 16 43 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.24 2.15 7.82 -2.91 -0.02 2.13 16 Total: -1.00 -81.74 377.19 1.38 -80.36 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.35 Total: 28.79 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 8.57 Total: 16.89 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -6.85 Total: -139.66 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -2.03 Total: -35.34 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -81.74 1.38 -80.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724673774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.843 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds