Wall clock time and date at job start Tue Mar 31 2020 16:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29810 * 126.33936 * 2 1 4 4 O 1.41323 * 109.72504 * 179.97438 * 3 2 1 5 5 C 1.34838 * 109.42481 * 0.02562 * 4 3 2 6 6 N 1.32451 * 133.09742 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.02413 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.16624 * 179.97438 * 7 6 5 9 9 C 1.38585 * 121.65901 * 0.02562 * 7 6 5 10 10 C 1.39449 * 119.20133 * 0.24568 * 9 7 6 11 11 C 1.48000 * 121.10300 * 179.72832 * 10 9 7 12 12 O 1.21526 * 119.99998 * 186.26375 * 11 10 9 13 13 N 1.34782 * 120.00236 * 6.26410 * 11 10 9 14 14 C 1.46499 * 120.00231 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47066 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47476 * 64.99816 * 15 14 13 17 17 C 1.52999 * 109.46692 * 184.99915 * 15 14 13 18 18 N 1.46502 * 109.46794 * 304.99493 * 15 14 13 19 19 C 1.46504 * 120.00013 * 300.00197 * 18 15 14 20 20 C 1.36935 * 119.99676 * 120.00726 * 18 15 14 21 21 H 1.07995 * 120.00022 * 22.47602 * 20 18 15 22 22 C 1.38815 * 119.99666 * 202.48441 * 20 18 15 23 23 N 1.31614 * 120.00200 * 16.20724 * 22 20 18 24 24 Si 1.86803 * 119.99715 * 196.21430 * 22 20 18 25 25 H 1.48505 * 109.47066 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47216 * 119.99634 * 24 22 20 27 27 H 1.48501 * 109.46725 * 239.99806 * 24 22 20 28 28 C 1.40522 * 106.85827 * 359.97438 * 5 4 3 29 29 H 1.08999 * 109.47162 * 252.61263 * 1 2 3 30 30 H 1.09002 * 109.46911 * 12.60907 * 1 2 3 31 31 H 1.08997 * 109.47681 * 132.60633 * 1 2 3 32 32 H 1.09003 * 109.47234 * 270.01695 * 8 7 6 33 33 H 1.09001 * 109.47494 * 30.02202 * 8 7 6 34 34 H 1.09003 * 109.47043 * 150.02443 * 8 7 6 35 35 H 1.08000 * 120.40061 * 179.97438 * 9 7 6 36 36 H 0.96999 * 119.99767 * 0.02562 * 13 11 10 37 37 H 1.09007 * 109.46938 * 300.00034 * 14 13 11 38 38 H 1.09000 * 109.47516 * 59.99734 * 14 13 11 39 39 H 1.08997 * 109.47443 * 299.99288 * 17 15 14 40 40 H 1.09004 * 109.47684 * 59.99603 * 17 15 14 41 41 H 1.09003 * 109.47276 * 179.97438 * 17 15 14 42 42 H 1.08997 * 109.46785 * 92.95222 * 19 18 15 43 43 H 1.09000 * 109.46939 * 212.95030 * 19 18 15 44 44 H 1.09001 * 109.46959 * 332.95138 * 19 18 15 45 45 H 0.97003 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0456 0.0000 4 8 3.6304 0.6416 0.0006 5 6 3.6966 -0.7052 0.0004 6 7 4.7069 -1.5616 0.0003 7 6 4.5178 -2.8636 -0.0004 8 6 5.7145 -3.7795 -0.0010 9 6 3.2459 -3.4139 -0.0016 10 6 2.1382 -2.5669 -0.0073 11 6 0.7611 -3.1092 -0.0148 12 8 -0.1869 -2.3584 -0.1345 13 7 0.5585 -4.4357 0.1111 14 6 -0.8046 -4.9726 0.1031 15 6 -0.7545 -6.4936 0.2612 16 1 -0.3518 -6.7439 1.2426 17 6 -2.1669 -7.0668 0.1281 18 7 0.1043 -7.0646 -0.7793 19 6 -0.2266 -6.8663 -2.1927 20 6 1.2162 -7.7839 -0.4308 21 1 1.2798 -8.2403 0.5459 22 6 2.2616 -7.9261 -1.3329 23 7 2.3419 -7.1303 -2.3781 24 14 3.5544 -9.2473 -1.0634 25 1 3.2392 -10.0030 0.1756 26 1 3.5619 -10.1763 -2.2219 27 1 4.8902 -8.6126 -0.9292 28 6 2.3733 -1.1782 0.0003 29 1 -0.3633 -0.3071 0.9807 30 1 -0.3633 1.0029 -0.2243 31 1 -0.3634 -0.6956 -0.7563 32 1 6.0032 -3.9996 -1.0288 33 1 6.5440 -3.2941 0.5133 34 1 5.4621 -4.7076 0.5120 35 1 3.1142 -4.4859 -0.0025 36 1 1.3152 -5.0350 0.2071 37 1 -1.3702 -4.5403 0.9286 38 1 -1.2888 -4.7207 -0.8403 39 1 -2.8058 -6.6419 0.9023 40 1 -2.5697 -6.8164 -0.8533 41 1 -2.1313 -8.1504 0.2403 42 1 0.2937 -5.9848 -2.5673 43 1 0.0828 -7.7411 -2.7645 44 1 -1.3024 -6.7253 -2.2976 45 1 3.0726 -7.2295 -3.0083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725168731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:22 Heat of formation + Delta-G solvation = 74.206229 kcal Electronic energy + Delta-G solvation = -29453.806967 eV Core-core repulsion = 25475.601197 eV Total energy + Delta-G solvation = -3978.205770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.05142 -39.68392 -38.69487 -36.91366 -34.69812 -33.99974 -32.75733 -32.17267 -31.67890 -29.46982 -28.65238 -27.62754 -26.26246 -26.13358 -24.23387 -23.25285 -22.64611 -21.16834 -19.81246 -19.30246 -18.05154 -17.63494 -17.12966 -17.02635 -16.45597 -15.53755 -15.38504 -15.02191 -14.67062 -14.27194 -14.11103 -14.06388 -13.63845 -13.36058 -13.20914 -12.97280 -12.92096 -12.80999 -12.51748 -12.37637 -12.28486 -11.99366 -11.93398 -11.72985 -11.45243 -11.21748 -11.01434 -10.92955 -10.83272 -10.56608 -10.41791 -10.07615 -10.01211 -9.91960 -9.49204 -9.32015 -8.90820 -8.74132 -8.64140 -6.97926 -5.92474 -3.39123 0.15913 0.86602 1.88707 2.09427 2.90701 3.22948 3.29154 3.34022 3.34702 3.66460 3.75066 4.08375 4.31367 4.39228 4.46350 4.71070 4.97811 5.14934 5.20293 5.23635 5.36418 5.43730 5.54048 5.57816 5.63541 5.71142 5.75732 5.78991 5.80869 5.93564 5.95540 6.00158 6.15258 6.22741 6.25352 6.36730 6.56603 6.65567 6.75587 6.92293 7.07620 7.22658 7.56244 7.58599 7.63559 7.85870 8.18834 8.45641 9.03157 9.66673 10.16426 11.10556 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.004575 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.561723 B = 6118.086419 C = 8078.302088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.165 3.835 3 N -0.291 5.291 4 O -0.089 6.089 5 C 0.289 3.711 6 N -0.474 5.474 7 C 0.204 3.796 8 C -0.108 4.108 9 C -0.161 4.161 10 C 0.005 3.995 11 C 0.548 3.452 12 O -0.540 6.540 13 N -0.682 5.682 14 C 0.106 3.894 15 C 0.157 3.843 16 H 0.070 0.930 17 C -0.158 4.158 18 N -0.594 5.594 19 C 0.161 3.839 20 C -0.265 4.265 21 H 0.068 0.932 22 C 0.009 3.991 23 N -0.897 5.897 24 Si 0.896 3.104 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C -0.213 4.213 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.042 0.958 44 H 0.001 0.999 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 5.779 5.466 8.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 N -0.040 5.040 4 O -0.092 6.092 5 C 0.106 3.894 6 N -0.196 5.196 7 C 0.061 3.939 8 C -0.165 4.165 9 C -0.182 4.182 10 C -0.008 4.008 11 C 0.334 3.666 12 O -0.421 6.421 13 N -0.332 5.332 14 C -0.020 4.020 15 C 0.048 3.952 16 H 0.088 0.912 17 C -0.218 4.218 18 N -0.317 5.317 19 C 0.016 3.984 20 C -0.395 4.395 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.541 5.541 24 Si 0.726 3.274 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.219 4.219 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.182 0.818 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.232 8.007 5.237 9.647 hybrid contribution 0.395 -2.075 -0.113 2.116 sum -0.837 5.932 5.124 7.883 Atomic orbital electron populations 1.20930 0.83105 1.03405 1.06575 1.24655 0.98846 0.88536 0.89439 1.80060 0.83986 1.17343 1.22644 1.89210 1.23605 1.14879 1.81473 1.20302 0.89241 0.86449 0.93399 1.66343 1.33019 1.02442 1.17811 1.21381 0.95244 0.87988 0.89317 1.20892 0.93970 0.97172 1.04462 1.22397 0.91514 1.02367 1.01952 1.20052 0.94975 0.90929 0.94810 1.18050 0.87587 0.83083 0.77868 1.90658 1.43211 1.57057 1.51168 1.45845 1.11201 1.06258 1.69862 1.22071 0.81982 0.96766 1.01189 1.20669 0.91674 0.88887 0.93972 0.91193 1.22163 0.97292 1.01375 1.00941 1.43971 1.26485 1.60685 1.00521 1.20746 0.92870 1.00503 0.84263 1.19246 0.93757 1.25207 1.01251 0.91388 1.24949 0.97265 0.98619 0.98239 1.70092 1.32303 1.36815 1.14884 0.86332 0.81396 0.81987 0.77659 1.20372 1.21661 1.21598 1.21234 0.93216 0.94430 1.13068 0.88882 0.91448 0.85363 0.88999 0.89823 0.89131 0.81776 0.74524 0.92283 0.91848 0.93480 0.92901 0.92324 0.95405 0.93952 0.98087 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 8.50 36.01 0.31 -0.77 16 2 C 0.17 2.58 7.44 -80.23 -0.60 1.99 16 3 N -0.29 -4.83 12.81 34.84 0.45 -4.38 16 4 O -0.09 -1.57 12.06 7.65 0.09 -1.48 16 5 C 0.29 4.98 8.64 -16.42 -0.14 4.84 16 6 N -0.47 -7.73 10.25 -9.24 -0.09 -7.82 16 7 C 0.20 2.93 6.78 -82.58 -0.56 2.37 16 8 C -0.11 -1.19 10.14 36.00 0.37 -0.83 16 9 C -0.16 -2.42 9.21 -39.00 -0.36 -2.78 16 10 C 0.01 0.08 5.93 -104.46 -0.62 -0.54 16 11 C 0.55 9.13 7.78 -12.26 -0.10 9.03 16 12 O -0.54 -9.22 11.37 5.34 0.06 -9.16 16 13 N -0.68 -11.29 5.35 -61.20 -0.33 -11.61 16 14 C 0.11 1.68 4.97 -4.04 -0.02 1.66 16 15 C 0.16 2.62 2.87 -67.93 -0.20 2.43 16 16 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 17 C -0.16 -2.30 9.18 37.16 0.34 -1.96 16 18 N -0.59 -12.26 2.28 -173.49 -0.40 -12.65 16 19 C 0.16 3.47 8.14 59.85 0.49 3.96 16 20 C -0.27 -6.06 9.30 -15.06 -0.14 -6.20 16 21 H 0.07 1.54 7.84 -52.49 -0.41 1.13 16 22 C 0.01 0.21 5.01 -17.43 -0.09 0.12 16 23 N -0.90 -22.31 10.88 55.49 0.60 -21.70 16 24 Si 0.90 19.09 29.58 -169.99 -5.03 14.06 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.21 -3.54 6.15 -104.83 -0.65 -4.19 16 29 H 0.09 1.15 7.83 -51.93 -0.41 0.75 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.13 1.83 5.56 -52.09 -0.29 1.54 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.16 2.43 6.59 -52.49 -0.35 2.09 16 36 H 0.42 7.23 6.08 -40.82 -0.25 6.99 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.66 7.47 -51.93 -0.39 0.27 16 43 H 0.04 1.01 7.25 -51.93 -0.38 0.63 16 44 H 0.00 0.01 6.43 -51.93 -0.33 -0.32 16 45 H 0.25 6.27 8.31 -40.82 -0.34 5.93 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -26.56 368.60 -7.10 -33.66 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.05 Total: 6.40 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.96 Total: 9.13 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.23 Total: -58.17 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.15 Total: -10.63 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.56 -7.10 -33.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725168731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.868 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds