Wall clock time and date at job start Tue Mar 31 2020 16:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29810 * 126.33936 * 2 1 4 4 O 1.41323 * 109.72504 * 179.97438 * 3 2 1 5 5 C 1.34838 * 109.42481 * 0.02562 * 4 3 2 6 6 N 1.32451 * 133.09742 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.02413 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.16624 * 179.97438 * 7 6 5 9 9 C 1.38585 * 121.65901 * 0.02562 * 7 6 5 10 10 C 1.39449 * 119.20133 * 0.24568 * 9 7 6 11 11 C 1.48000 * 121.10300 * 179.72832 * 10 9 7 12 12 O 1.21526 * 119.99998 * 186.26375 * 11 10 9 13 13 N 1.34782 * 120.00236 * 6.26410 * 11 10 9 14 14 C 1.46499 * 120.00231 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47066 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47476 * 64.99816 * 15 14 13 17 17 C 1.52999 * 109.46692 * 184.99915 * 15 14 13 18 18 N 1.46502 * 109.46794 * 304.99493 * 15 14 13 19 19 C 1.46504 * 120.00013 * 300.00197 * 18 15 14 20 20 C 1.36935 * 119.99676 * 120.00726 * 18 15 14 21 21 H 1.07995 * 120.00022 * 22.47602 * 20 18 15 22 22 C 1.38815 * 119.99666 * 202.48441 * 20 18 15 23 23 N 1.31614 * 120.00200 * 16.20724 * 22 20 18 24 24 Si 1.86803 * 119.99715 * 196.21430 * 22 20 18 25 25 H 1.48505 * 109.47066 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47216 * 119.99634 * 24 22 20 27 27 H 1.48501 * 109.46725 * 239.99806 * 24 22 20 28 28 C 1.40522 * 106.85827 * 359.97438 * 5 4 3 29 29 H 1.08999 * 109.47162 * 252.61263 * 1 2 3 30 30 H 1.09002 * 109.46911 * 12.60907 * 1 2 3 31 31 H 1.08997 * 109.47681 * 132.60633 * 1 2 3 32 32 H 1.09003 * 109.47234 * 270.01695 * 8 7 6 33 33 H 1.09001 * 109.47494 * 30.02202 * 8 7 6 34 34 H 1.09003 * 109.47043 * 150.02443 * 8 7 6 35 35 H 1.08000 * 120.40061 * 179.97438 * 9 7 6 36 36 H 0.96999 * 119.99767 * 0.02562 * 13 11 10 37 37 H 1.09007 * 109.46938 * 300.00034 * 14 13 11 38 38 H 1.09000 * 109.47516 * 59.99734 * 14 13 11 39 39 H 1.08997 * 109.47443 * 299.99288 * 17 15 14 40 40 H 1.09004 * 109.47684 * 59.99603 * 17 15 14 41 41 H 1.09003 * 109.47276 * 179.97438 * 17 15 14 42 42 H 1.08997 * 109.46785 * 92.95222 * 19 18 15 43 43 H 1.09000 * 109.46939 * 212.95030 * 19 18 15 44 44 H 1.09001 * 109.46959 * 332.95138 * 19 18 15 45 45 H 0.97003 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0456 0.0000 4 8 3.6304 0.6416 0.0006 5 6 3.6966 -0.7052 0.0004 6 7 4.7069 -1.5616 0.0003 7 6 4.5178 -2.8636 -0.0004 8 6 5.7145 -3.7795 -0.0010 9 6 3.2459 -3.4139 -0.0016 10 6 2.1382 -2.5669 -0.0073 11 6 0.7611 -3.1092 -0.0148 12 8 -0.1869 -2.3584 -0.1345 13 7 0.5585 -4.4357 0.1111 14 6 -0.8046 -4.9726 0.1031 15 6 -0.7545 -6.4936 0.2612 16 1 -0.3518 -6.7439 1.2426 17 6 -2.1669 -7.0668 0.1281 18 7 0.1043 -7.0646 -0.7793 19 6 -0.2266 -6.8663 -2.1927 20 6 1.2162 -7.7839 -0.4308 21 1 1.2798 -8.2403 0.5459 22 6 2.2616 -7.9261 -1.3329 23 7 2.3419 -7.1303 -2.3781 24 14 3.5544 -9.2473 -1.0634 25 1 3.2392 -10.0030 0.1756 26 1 3.5619 -10.1763 -2.2219 27 1 4.8902 -8.6126 -0.9292 28 6 2.3733 -1.1782 0.0003 29 1 -0.3633 -0.3071 0.9807 30 1 -0.3633 1.0029 -0.2243 31 1 -0.3634 -0.6956 -0.7563 32 1 6.0032 -3.9996 -1.0288 33 1 6.5440 -3.2941 0.5133 34 1 5.4621 -4.7076 0.5120 35 1 3.1142 -4.4859 -0.0025 36 1 1.3152 -5.0350 0.2071 37 1 -1.3702 -4.5403 0.9286 38 1 -1.2888 -4.7207 -0.8403 39 1 -2.8058 -6.6419 0.9023 40 1 -2.5697 -6.8164 -0.8533 41 1 -2.1313 -8.1504 0.2403 42 1 0.2937 -5.9848 -2.5673 43 1 0.0828 -7.7411 -2.7645 44 1 -1.3024 -6.7253 -2.2976 45 1 3.0726 -7.2295 -3.0083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725168731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:22 Heat of formation + Delta-G solvation = 57.893916 kcal Electronic energy + Delta-G solvation = -29454.514322 eV Core-core repulsion = 25475.601197 eV Total energy + Delta-G solvation = -3978.913125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.29975 -40.97642 -39.93907 -38.38841 -35.96690 -35.42441 -34.17381 -33.39591 -32.98740 -31.03825 -29.77875 -28.74358 -27.93022 -27.45058 -25.51287 -24.83572 -23.89220 -22.39561 -21.17071 -20.65112 -19.29174 -18.91804 -18.75174 -18.33673 -17.72918 -17.05478 -16.75368 -16.36342 -16.06567 -15.65745 -15.44685 -15.18119 -14.95740 -14.66649 -14.49745 -14.39201 -14.23899 -13.99063 -13.80324 -13.61922 -13.43523 -13.21190 -13.03943 -13.00523 -12.82132 -12.64266 -12.52688 -12.38855 -12.24011 -12.21262 -12.00261 -11.68068 -11.42224 -11.32368 -10.74822 -10.58303 -10.52117 -10.12854 -9.95584 -8.71148 -7.71965 -5.18791 -1.07444 -0.39022 0.65926 0.83853 1.53005 1.61266 1.63074 1.65895 2.00764 2.41092 2.54107 2.59073 2.87837 3.20214 3.24439 3.42160 3.47119 3.71594 3.81504 3.97304 4.12619 4.20250 4.39283 4.43992 4.51513 4.64942 4.66722 4.71953 4.72556 4.77540 4.81497 4.87597 4.91148 4.93116 5.12876 5.16349 5.28070 5.34237 5.35395 5.53688 5.66726 5.76563 5.80547 5.82633 6.36673 6.42011 6.52143 7.13183 7.24840 7.96185 8.42040 9.29347 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.004575 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.561723 B = 6118.086419 C = 8078.302088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.169 3.831 3 N -0.301 5.301 4 O -0.107 6.107 5 C 0.275 3.725 6 N -0.485 5.485 7 C 0.207 3.793 8 C -0.106 4.106 9 C -0.158 4.158 10 C -0.002 4.002 11 C 0.547 3.453 12 O -0.545 6.545 13 N -0.683 5.683 14 C 0.112 3.888 15 C 0.155 3.845 16 H 0.075 0.925 17 C -0.150 4.150 18 N -0.601 5.601 19 C 0.179 3.821 20 C -0.259 4.259 21 H 0.072 0.928 22 C -0.031 4.031 23 N -0.922 5.922 24 Si 0.946 3.054 25 H -0.273 1.273 26 H -0.308 1.308 27 H -0.286 1.286 28 C -0.227 4.227 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.001 0.999 43 H 0.012 0.988 44 H 0.024 0.976 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 5.323 6.755 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 N -0.052 5.052 4 O -0.108 6.108 5 C 0.093 3.907 6 N -0.208 5.208 7 C 0.065 3.935 8 C -0.163 4.163 9 C -0.179 4.179 10 C -0.015 4.015 11 C 0.333 3.667 12 O -0.426 6.426 13 N -0.333 5.333 14 C -0.013 4.013 15 C 0.048 3.952 16 H 0.094 0.906 17 C -0.209 4.209 18 N -0.324 5.324 19 C 0.034 3.966 20 C -0.389 4.389 21 H 0.090 0.910 22 C -0.228 4.228 23 N -0.567 5.567 24 Si 0.776 3.224 25 H -0.198 1.198 26 H -0.236 1.236 27 H -0.212 1.212 28 C -0.234 4.234 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.185 0.815 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.020 0.980 43 H 0.030 0.970 44 H 0.042 0.958 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.948 7.552 6.562 10.193 hybrid contribution 0.556 -1.978 -0.485 2.111 sum -1.392 5.574 6.077 8.363 Atomic orbital electron populations 1.20954 0.81216 1.04518 1.06589 1.25062 0.99820 0.87918 0.88314 1.80040 0.83583 1.17716 1.23844 1.89165 1.24479 1.15297 1.81843 1.20515 0.89879 0.86456 0.93893 1.66441 1.32949 1.03010 1.18358 1.21932 0.96200 0.87731 0.87678 1.21035 0.93013 0.97053 1.05237 1.22488 0.91613 1.02312 1.01463 1.20085 0.95145 0.90932 0.95290 1.18116 0.87747 0.83065 0.77726 1.90666 1.43414 1.57106 1.51388 1.45875 1.11330 1.06160 1.69895 1.22022 0.81823 0.96026 1.01435 1.20862 0.92227 0.89264 0.92881 0.90642 1.22061 0.96039 1.00932 1.01871 1.44080 1.26507 1.60959 1.00893 1.20415 0.93732 0.97846 0.84624 1.19469 0.93909 1.24558 1.01010 0.91041 1.25416 0.98875 1.00017 0.98447 1.70218 1.32713 1.38138 1.15675 0.85546 0.80058 0.79973 0.76791 1.19782 1.23577 1.21237 1.21381 0.93335 0.94895 1.13747 0.88016 0.89210 0.86406 0.88322 0.88362 0.87694 0.81535 0.75019 0.90034 0.93024 0.90406 0.93265 0.92997 0.98031 0.96952 0.95756 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 8.50 71.24 0.61 -1.26 16 2 C 0.17 5.18 7.44 44.94 0.33 5.52 16 3 N -0.30 -9.92 12.81 -43.67 -0.56 -10.48 16 4 O -0.11 -3.81 12.06 29.77 0.36 -3.45 16 5 C 0.27 9.51 8.64 85.16 0.74 10.24 16 6 N -0.49 -15.63 10.25 -296.38 -3.04 -18.67 16 7 C 0.21 5.79 6.78 42.68 0.29 6.08 16 8 C -0.11 -2.17 10.14 71.24 0.72 -1.45 16 9 C -0.16 -4.64 9.21 22.64 0.21 -4.43 16 10 C 0.00 -0.06 5.93 -19.76 -0.12 -0.18 16 11 C 0.55 17.73 7.78 86.83 0.68 18.40 16 12 O -0.54 -17.92 11.37 -3.80 -0.04 -17.96 16 13 N -0.68 -21.79 5.35 -465.82 -2.49 -24.28 16 14 C 0.11 3.33 4.97 86.38 0.43 3.76 16 15 C 0.15 4.83 2.87 44.99 0.13 4.96 16 16 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 17 C -0.15 -3.92 9.18 71.98 0.66 -3.26 16 18 N -0.60 -24.14 2.28 -702.78 -1.60 -25.74 16 19 C 0.18 7.68 8.14 127.77 1.04 8.72 16 20 C -0.26 -11.56 9.30 84.03 0.78 -10.78 16 21 H 0.07 3.12 7.84 -2.91 -0.02 3.09 16 22 C -0.03 -1.44 5.01 84.86 0.43 -1.01 16 23 N -0.92 -46.15 10.88 21.65 0.24 -45.91 16 24 Si 0.95 38.84 29.58 68.60 2.03 40.87 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.31 -13.47 7.11 99.48 0.71 -12.77 16 27 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 28 C -0.23 -7.51 6.15 -20.00 -0.12 -7.64 16 29 H 0.10 2.34 7.83 -2.39 -0.02 2.32 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 3.23 5.56 -4.98 -0.03 3.21 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.86 8.07 -2.39 -0.02 1.84 16 35 H 0.17 4.82 6.59 -2.91 -0.02 4.81 16 36 H 0.41 13.92 6.08 -92.71 -0.56 13.36 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.32 6.66 -2.38 -0.02 1.31 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.00 0.07 7.47 -2.39 -0.02 0.05 16 43 H 0.01 0.57 7.25 -2.39 -0.02 0.55 16 44 H 0.02 0.91 6.43 -2.39 -0.02 0.89 16 45 H 0.25 12.32 8.31 -92.71 -0.77 11.54 16 Total: -1.00 -56.37 368.60 2.14 -54.23 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.46 Total: 23.71 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 6.80 Total: 27.69 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -7.46 Total: -125.08 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.32 Total: -21.41 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -56.37 2.14 -54.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725168731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.122 kcal (2) G-P(sol) polarization free energy of solvation -56.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds