Wall clock time and date at job start Tue Mar 31 2020 16:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99623 * 2 1 4 4 H 1.48507 * 109.47044 * 239.99853 * 3 2 1 5 5 H 1.48505 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47112 * 119.99906 * 3 2 1 7 7 C 1.38811 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00425 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46744 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46795 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47190 * 179.97438 * 12 11 10 14 14 C 1.42898 * 114.00401 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47346 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47134 * 65.00014 * 15 14 13 17 17 C 1.34785 * 119.99945 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.47371 * 119.99794 * 179.97438 * 17 16 15 20 20 C 1.39253 * 120.83940 * 0.02562 * 19 17 16 21 21 N 1.31914 * 120.97150 * 179.97438 * 20 19 17 22 22 C 1.31916 * 122.71703 * 0.02562 * 21 20 19 23 23 C 1.38694 * 120.79642 * 359.97438 * 22 21 20 24 24 N 1.37754 * 134.30279 * 180.02562 * 23 22 21 25 25 H 0.96994 * 125.55884 * 0.02646 * 24 23 22 26 26 C 1.36562 * 108.87676 * 179.97438 * 24 23 22 27 27 C 1.34647 * 109.65988 * 0.02562 * 26 24 23 28 28 C 1.40985 * 118.84118 * 359.97438 * 23 22 21 29 29 H 0.96996 * 120.00453 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00253 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47005 * 60.00296 * 10 9 7 32 32 H 1.09004 * 109.46995 * 299.99714 * 10 9 7 33 33 H 1.08993 * 109.47189 * 59.99746 * 11 10 9 34 34 H 1.09004 * 109.47024 * 299.99553 * 11 10 9 35 35 H 1.09003 * 109.47458 * 59.99945 * 12 11 10 36 36 H 1.09004 * 109.46958 * 299.99580 * 12 11 10 37 37 H 1.09001 * 109.46721 * 59.99621 * 14 13 12 38 38 H 1.08997 * 109.46942 * 300.00221 * 14 13 12 39 39 H 1.09005 * 109.47138 * 305.00063 * 15 14 13 40 40 H 1.09003 * 109.47244 * 185.00265 * 15 14 13 41 41 H 0.96991 * 120.00101 * 359.97438 * 16 15 14 42 42 H 1.08001 * 119.51508 * 0.25937 * 20 19 17 43 43 H 1.08002 * 119.59934 * 180.02562 * 22 21 20 44 44 H 1.08001 * 125.16314 * 179.97438 * 26 24 23 45 45 H 1.08005 * 126.08533 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8291 -6.1447 -0.0005 13 8 0.9006 -7.2309 -0.0005 14 6 1.5152 -8.5210 -0.0005 15 6 0.4323 -9.6018 -0.0012 16 7 -0.3252 -9.5334 -1.2533 17 6 -1.3369 -10.3955 -1.4768 18 8 -1.6206 -11.2304 -0.6394 19 6 -2.0992 -10.3263 -2.7362 20 6 -1.7889 -9.3776 -3.7072 21 7 -2.4693 -9.3137 -4.8356 22 6 -3.4693 -10.1283 -5.1124 23 6 -3.8571 -11.1084 -4.2110 24 7 -4.8315 -12.0821 -4.2085 25 1 -5.4668 -12.2462 -4.9229 26 6 -4.7565 -12.7793 -3.0367 27 6 -3.7603 -12.2844 -2.2781 28 6 -3.1629 -11.2217 -2.9891 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6848 -3.7144 0.8894 32 1 2.6849 -3.7144 -0.8906 33 1 0.4377 -4.7618 -0.8913 34 1 0.4371 -4.7622 0.8886 35 1 2.4552 -6.2024 0.8899 36 1 2.4564 -6.2025 -0.8901 37 1 2.1353 -8.6279 0.8894 38 1 2.1353 -8.6280 -0.8905 39 1 -0.2416 -9.4414 0.8404 40 1 0.8983 -10.5831 0.0884 41 1 -0.0992 -8.8673 -1.9211 42 1 -0.9764 -8.6871 -3.5360 43 1 -3.9917 -10.0313 -6.0526 44 1 -5.3993 -13.6020 -2.7602 45 1 -3.4691 -12.6387 -1.3002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725449518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:26 Heat of formation + Delta-G solvation = -1.660311 kcal Electronic energy + Delta-G solvation = -26499.672075 eV Core-core repulsion = 22518.176485 eV Total energy + Delta-G solvation = -3981.495590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17950 -39.83646 -38.36527 -38.05767 -35.43704 -34.70802 -33.02629 -32.31674 -30.81568 -30.31759 -29.78048 -28.70063 -25.20086 -24.83237 -23.10077 -22.75517 -22.50076 -21.44084 -20.98277 -20.80751 -18.91015 -17.73217 -17.08497 -17.01701 -16.84112 -16.55637 -15.81353 -15.57326 -15.35896 -15.12473 -14.93620 -14.62392 -14.30360 -14.16202 -13.65077 -13.52849 -13.30805 -13.11279 -13.02287 -12.83561 -12.79767 -12.38972 -12.17162 -11.65958 -11.29497 -10.88411 -10.73969 -10.69292 -10.62695 -10.54793 -10.51321 -10.06606 -9.73900 -9.68736 -9.60301 -9.30525 -9.06564 -8.84893 -8.35994 -6.90494 -5.73662 -3.03011 0.11019 1.04025 2.27971 2.52651 2.68764 2.91314 3.46200 3.49104 3.51321 3.55523 3.65156 4.01137 4.26496 4.35431 4.47856 4.60724 4.66240 4.75180 4.81003 4.91025 4.95787 5.14798 5.27387 5.28692 5.31413 5.41537 5.43211 5.59086 5.60886 5.66281 5.79882 5.98007 6.01526 6.09890 6.17473 6.20931 6.28404 6.38336 6.44557 6.83935 6.88343 6.90749 7.17844 7.27392 7.58826 7.71265 8.00365 8.45045 9.55814 10.13905 10.48616 11.49186 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.001800 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.341625 B =15550.704702 C =16820.702795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.387 6.387 14 C 0.047 3.953 15 C 0.124 3.876 16 N -0.719 5.719 17 C 0.566 3.434 18 O -0.535 6.535 19 C -0.146 4.146 20 C 0.104 3.896 21 N -0.472 5.472 22 C 0.142 3.858 23 C 0.017 3.983 24 N -0.577 5.577 25 H 0.422 0.578 26 C 0.068 3.932 27 C -0.193 4.193 28 C -0.020 4.020 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.404 0.596 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.179 0.821 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 -31.199 -8.737 33.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.306 6.306 14 C -0.030 4.030 15 C 0.001 3.999 16 N -0.371 5.371 17 C 0.353 3.647 18 O -0.413 6.413 19 C -0.152 4.152 20 C -0.048 4.048 21 N -0.180 5.180 22 C -0.025 4.025 23 C -0.093 4.093 24 N -0.180 5.180 25 H 0.260 0.740 26 C -0.062 4.062 27 C -0.218 4.218 28 C -0.032 4.032 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.240 0.760 42 H 0.177 0.823 43 H 0.175 0.825 44 H 0.196 0.804 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.086 -30.998 -8.766 32.984 hybrid contribution 0.025 0.567 0.007 0.567 sum -7.061 -30.431 -8.759 32.444 Atomic orbital electron populations 1.69655 1.05125 1.25808 1.57575 1.24767 0.95558 0.97757 1.02986 0.86238 0.78486 0.83438 0.77832 1.21251 1.21663 1.21257 1.19191 0.91019 0.84148 1.42938 0.91188 1.42334 1.05963 0.99896 1.89536 1.20514 0.93304 0.85481 0.97821 1.21673 0.99423 0.91802 1.03379 1.22513 0.91810 0.86451 1.00096 1.87934 1.33920 1.13294 1.95465 1.22724 0.94980 0.83840 1.01447 1.21415 0.93712 0.97725 0.87053 1.45836 1.34250 1.36039 1.21023 1.17877 0.79696 0.81066 0.86054 1.90750 1.67497 1.36784 1.46286 1.20355 0.98828 0.99315 0.96663 1.22694 0.98008 0.95695 0.88417 1.67618 1.06432 1.23595 1.20359 1.21981 0.93662 0.89149 0.97679 1.19360 0.94939 0.96317 0.98694 1.41779 1.29735 1.28294 1.18157 0.73957 1.22243 1.00120 0.98133 0.85684 1.20894 0.99135 0.99329 1.02400 1.18166 0.94909 0.96379 0.93751 0.93421 0.78166 0.96350 0.96323 0.91134 0.91170 0.93233 0.93236 0.91488 0.92612 0.90257 0.89876 0.75974 0.82280 0.82455 0.80376 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.21 5.60 -59.90 -0.34 -19.54 16 10 C 0.16 3.19 6.26 -4.04 -0.03 3.17 16 11 C -0.12 -2.09 5.70 -26.73 -0.15 -2.24 16 12 C 0.07 0.89 5.94 37.16 0.22 1.11 16 13 O -0.39 -4.86 10.29 -35.23 -0.36 -5.23 16 14 C 0.05 0.42 6.07 37.15 0.23 0.65 16 15 C 0.12 1.17 6.06 -4.04 -0.02 1.15 16 16 N -0.72 -7.27 5.46 -61.40 -0.34 -7.60 16 17 C 0.57 6.92 7.77 -12.54 -0.10 6.82 16 18 O -0.54 -7.88 15.22 5.27 0.08 -7.80 16 19 C -0.15 -1.66 5.91 -104.63 -0.62 -2.28 16 20 C 0.10 1.08 10.71 -17.14 -0.18 0.90 16 21 N -0.47 -5.04 10.30 -12.85 -0.13 -5.17 16 22 C 0.14 1.20 11.21 -17.35 -0.19 1.00 16 23 C 0.02 0.14 7.31 -84.00 -0.61 -0.47 16 24 N -0.58 -3.04 6.13 -10.63 -0.07 -3.11 16 25 H 0.42 0.69 8.96 -40.82 -0.37 0.33 16 26 C 0.07 0.39 11.84 -16.72 -0.20 0.19 16 27 C -0.19 -1.82 10.09 -39.76 -0.40 -2.23 16 28 C -0.02 -0.22 6.04 -106.59 -0.64 -0.86 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 3.50 6.55 -40.82 -0.27 3.23 16 42 H 0.16 1.31 6.42 -52.49 -0.34 0.98 16 43 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.16 1.62 7.19 -52.48 -0.38 1.24 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -37.21 383.79 -8.90 -46.11 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.28 Total: 7.72 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.95 Total: -0.72 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.14 Total: -63.53 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.28 Total: -13.03 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.21 -8.90 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725449518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.446 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds