Wall clock time and date at job start Tue Mar 31 2020 16:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99623 * 2 1 4 4 H 1.48507 * 109.47044 * 239.99853 * 3 2 1 5 5 H 1.48505 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47112 * 119.99906 * 3 2 1 7 7 C 1.38811 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00425 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46744 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46795 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47190 * 179.97438 * 12 11 10 14 14 C 1.42898 * 114.00401 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47346 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47134 * 65.00014 * 15 14 13 17 17 C 1.34785 * 119.99945 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.47371 * 119.99794 * 179.97438 * 17 16 15 20 20 C 1.39253 * 120.83940 * 0.02562 * 19 17 16 21 21 N 1.31914 * 120.97150 * 179.97438 * 20 19 17 22 22 C 1.31916 * 122.71703 * 0.02562 * 21 20 19 23 23 C 1.38694 * 120.79642 * 359.97438 * 22 21 20 24 24 N 1.37754 * 134.30279 * 180.02562 * 23 22 21 25 25 H 0.96994 * 125.55884 * 0.02646 * 24 23 22 26 26 C 1.36562 * 108.87676 * 179.97438 * 24 23 22 27 27 C 1.34647 * 109.65988 * 0.02562 * 26 24 23 28 28 C 1.40985 * 118.84118 * 359.97438 * 23 22 21 29 29 H 0.96996 * 120.00453 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00253 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47005 * 60.00296 * 10 9 7 32 32 H 1.09004 * 109.46995 * 299.99714 * 10 9 7 33 33 H 1.08993 * 109.47189 * 59.99746 * 11 10 9 34 34 H 1.09004 * 109.47024 * 299.99553 * 11 10 9 35 35 H 1.09003 * 109.47458 * 59.99945 * 12 11 10 36 36 H 1.09004 * 109.46958 * 299.99580 * 12 11 10 37 37 H 1.09001 * 109.46721 * 59.99621 * 14 13 12 38 38 H 1.08997 * 109.46942 * 300.00221 * 14 13 12 39 39 H 1.09005 * 109.47138 * 305.00063 * 15 14 13 40 40 H 1.09003 * 109.47244 * 185.00265 * 15 14 13 41 41 H 0.96991 * 120.00101 * 359.97438 * 16 15 14 42 42 H 1.08001 * 119.51508 * 0.25937 * 20 19 17 43 43 H 1.08002 * 119.59934 * 180.02562 * 22 21 20 44 44 H 1.08001 * 125.16314 * 179.97438 * 26 24 23 45 45 H 1.08005 * 126.08533 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8291 -6.1447 -0.0005 13 8 0.9006 -7.2309 -0.0005 14 6 1.5152 -8.5210 -0.0005 15 6 0.4323 -9.6018 -0.0012 16 7 -0.3252 -9.5334 -1.2533 17 6 -1.3369 -10.3955 -1.4768 18 8 -1.6206 -11.2304 -0.6394 19 6 -2.0992 -10.3263 -2.7362 20 6 -1.7889 -9.3776 -3.7072 21 7 -2.4693 -9.3137 -4.8356 22 6 -3.4693 -10.1283 -5.1124 23 6 -3.8571 -11.1084 -4.2110 24 7 -4.8315 -12.0821 -4.2085 25 1 -5.4668 -12.2462 -4.9229 26 6 -4.7565 -12.7793 -3.0367 27 6 -3.7603 -12.2844 -2.2781 28 6 -3.1629 -11.2217 -2.9891 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6848 -3.7144 0.8894 32 1 2.6849 -3.7144 -0.8906 33 1 0.4377 -4.7618 -0.8913 34 1 0.4371 -4.7622 0.8886 35 1 2.4552 -6.2024 0.8899 36 1 2.4564 -6.2025 -0.8901 37 1 2.1353 -8.6279 0.8894 38 1 2.1353 -8.6280 -0.8905 39 1 -0.2416 -9.4414 0.8404 40 1 0.8983 -10.5831 0.0884 41 1 -0.0992 -8.8673 -1.9211 42 1 -0.9764 -8.6871 -3.5360 43 1 -3.9917 -10.0313 -6.0526 44 1 -5.3993 -13.6020 -2.7602 45 1 -3.4691 -12.6387 -1.3002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725449518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:25 Heat of formation + Delta-G solvation = -30.246081 kcal Electronic energy + Delta-G solvation = -26500.911647 eV Core-core repulsion = 22518.176485 eV Total energy + Delta-G solvation = -3982.735162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80229 -40.68417 -39.18354 -38.90046 -37.03365 -35.83618 -34.14017 -33.68371 -31.89790 -31.14742 -30.90253 -29.64709 -26.80771 -25.68000 -24.28242 -23.78722 -23.45153 -22.34117 -22.12824 -21.67784 -19.57406 -19.12957 -18.46853 -17.79835 -17.74858 -17.42507 -16.77957 -16.59826 -16.31578 -16.13679 -15.71728 -15.67740 -15.50752 -15.31708 -15.18191 -14.84509 -14.42877 -14.23192 -13.96905 -13.67667 -13.44013 -13.29612 -13.14326 -13.04246 -12.75321 -12.59322 -12.42242 -12.08747 -12.01147 -11.92302 -11.74338 -11.46122 -11.22905 -10.92872 -10.58549 -10.47534 -10.17146 -9.68035 -9.02146 -9.00388 -7.95381 -5.25688 -0.59068 0.36037 1.47739 1.51810 1.57960 1.62485 1.88661 2.03311 2.13171 2.51480 2.67370 2.89602 3.35262 3.37978 3.62408 3.77728 3.85408 3.87865 4.04988 4.10025 4.10349 4.18524 4.22266 4.38033 4.43781 4.44073 4.53391 4.63837 4.65795 4.73639 4.75631 4.78482 4.82953 4.90224 5.16760 5.33469 5.34709 5.36744 5.37437 5.48950 5.54772 5.80944 6.24378 6.28687 6.45248 6.55723 6.88715 7.14073 7.32031 8.07886 8.30590 9.28294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.001800 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.341625 B =15550.704702 C =16820.702795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.078 3.922 13 O -0.408 6.408 14 C 0.049 3.951 15 C 0.124 3.876 16 N -0.712 5.712 17 C 0.563 3.437 18 O -0.571 6.571 19 C -0.175 4.175 20 C 0.103 3.897 21 N -0.501 5.501 22 C 0.150 3.850 23 C 0.006 3.994 24 N -0.555 5.555 25 H 0.443 0.557 26 C 0.108 3.892 27 C -0.241 4.241 28 C -0.048 4.048 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.026 0.974 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.411 0.589 42 H 0.171 0.829 43 H 0.193 0.807 44 H 0.225 0.775 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -32.387 -10.040 34.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.153 4.153 12 C 0.001 3.999 13 O -0.328 6.328 14 C -0.027 4.027 15 C 0.001 3.999 16 N -0.364 5.364 17 C 0.351 3.649 18 O -0.452 6.452 19 C -0.181 4.181 20 C -0.048 4.048 21 N -0.209 5.209 22 C -0.016 4.016 23 C -0.104 4.104 24 N -0.159 5.159 25 H 0.286 0.714 26 C -0.024 4.024 27 C -0.266 4.266 28 C -0.060 4.060 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.248 0.752 42 H 0.188 0.812 43 H 0.210 0.790 44 H 0.242 0.758 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.690 -32.206 -10.104 34.410 hybrid contribution -0.160 0.778 0.382 0.881 sum -6.849 -31.428 -9.722 33.603 Atomic orbital electron populations 1.69828 1.06788 1.26289 1.59326 1.25678 0.96484 1.01469 1.03534 0.85128 0.77127 0.78655 0.78330 1.20131 1.22158 1.20183 1.19658 0.91680 0.85282 1.41575 0.90253 1.42610 1.05713 1.01416 1.89582 1.20681 0.93834 0.84424 0.98224 1.21487 0.98629 0.92963 1.02192 1.22318 0.91177 0.84734 1.01655 1.87891 1.34697 1.14466 1.95732 1.22880 0.94771 0.81703 1.03372 1.21469 0.93559 0.98762 0.86108 1.45838 1.33682 1.35580 1.21330 1.18133 0.79870 0.80787 0.86151 1.90715 1.68654 1.38328 1.47461 1.20379 1.00073 1.00870 0.96770 1.22866 0.98204 0.95484 0.88275 1.67671 1.07763 1.24937 1.20575 1.22545 0.92590 0.87887 0.98532 1.19405 0.95731 0.97319 0.97979 1.41818 1.28852 1.26742 1.18523 0.71444 1.22834 0.98118 0.97239 0.84255 1.20920 1.01769 1.00935 1.02950 1.18575 0.95359 0.96875 0.95226 0.93935 0.79583 0.95620 0.95361 0.92140 0.92612 0.91888 0.91400 0.89592 0.90493 0.92111 0.88567 0.75160 0.81187 0.78989 0.75821 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -39.61 5.60 -343.44 -1.92 -41.54 16 10 C 0.15 6.19 6.26 86.38 0.54 6.73 16 11 C -0.11 -3.80 5.70 30.60 0.17 -3.63 16 12 C 0.08 1.88 5.94 71.98 0.43 2.31 16 13 O -0.41 -9.77 10.29 -148.98 -1.53 -11.30 16 14 C 0.05 0.79 6.07 71.98 0.44 1.23 16 15 C 0.12 2.33 6.06 86.38 0.52 2.86 16 16 N -0.71 -14.81 5.46 -466.42 -2.55 -17.36 16 17 C 0.56 14.66 7.77 86.65 0.67 15.33 16 18 O -0.57 -18.09 15.22 -4.06 -0.06 -18.15 16 19 C -0.17 -4.22 5.91 -19.87 -0.12 -4.34 16 20 C 0.10 2.22 10.71 84.92 0.91 3.13 16 21 N -0.50 -10.56 10.30 -194.56 -2.00 -12.56 16 22 C 0.15 2.34 11.21 84.79 0.95 3.29 16 23 C 0.01 0.10 7.31 38.99 0.29 0.39 16 24 N -0.56 -4.37 6.13 -187.55 -1.15 -5.52 16 25 H 0.44 -0.20 8.96 -92.71 -0.83 -1.03 16 26 C 0.11 0.98 11.84 83.13 0.98 1.97 16 27 C -0.24 -4.65 10.09 22.16 0.22 -4.43 16 28 C -0.05 -1.09 6.04 -21.14 -0.13 -1.22 16 29 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 30 H 0.37 21.07 7.67 -92.71 -0.71 20.36 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.41 7.19 6.55 -92.72 -0.61 6.59 16 42 H 0.17 2.92 6.42 -2.91 -0.02 2.90 16 43 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.23 -0.14 8.06 -2.91 -0.02 -0.17 16 45 H 0.14 3.16 7.19 -2.91 -0.02 3.13 16 Total: -1.00 -83.19 383.79 -0.82 -84.01 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -1.10 Total: 28.59 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.19 Total: 5.92 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -7.34 Total: -137.76 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.59 Total: -29.46 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.19 -0.82 -84.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725449518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.760 kcal (2) G-P(sol) polarization free energy of solvation -83.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds