Wall clock time and date at job start Tue Mar 31 2020 16:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40573 * 119.83292 * 2 1 4 4 C 1.35888 * 119.73453 * 179.97438 * 3 2 1 5 5 C 1.41194 * 119.34559 * 0.02562 * 4 3 2 6 6 N 1.32231 * 132.04551 * 180.34397 * 5 4 3 7 7 C 1.34580 * 109.02015 * 180.12110 * 6 5 4 8 8 C 1.47595 * 125.91862 * 179.82146 * 7 6 5 9 9 O 1.21583 * 120.00515 * 173.16611 * 8 7 6 10 10 N 1.34781 * 119.99575 * 353.44754 * 8 7 6 11 11 C 1.46503 * 120.00130 * 3.18881 * 10 8 7 12 12 C 1.46499 * 119.99914 * 183.18495 * 10 8 7 13 13 C 1.52999 * 109.47113 * 89.99631 * 12 10 8 14 14 H 1.09008 * 109.46793 * 60.00623 * 13 12 10 15 15 O 1.42898 * 109.47623 * 300.00173 * 13 12 10 16 16 C 1.53000 * 109.47069 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.47082 * 185.00522 * 16 13 12 18 18 C 1.36931 * 120.00120 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00019 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99843 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47482 * 90.00183 * 22 20 18 24 24 H 1.48500 * 109.47229 * 210.00428 * 22 20 18 25 25 H 1.48503 * 109.47069 * 329.99983 * 22 20 18 26 26 C 1.36574 * 108.16474 * 359.56524 * 7 6 5 27 27 N 1.36191 * 107.09533 * 0.26082 * 26 7 6 28 28 C 1.34851 * 119.82737 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47081 * 89.99604 * 1 2 3 30 30 H 1.09000 * 109.47021 * 209.99796 * 1 2 3 31 31 H 1.09000 * 109.46978 * 329.99707 * 1 2 3 32 32 H 1.08004 * 120.12796 * 359.95982 * 3 2 1 33 33 H 1.08001 * 120.33139 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47208 * 84.09770 * 11 10 8 35 35 H 1.09004 * 109.46531 * 204.09645 * 11 10 8 36 36 H 1.09003 * 109.46688 * 324.09167 * 11 10 8 37 37 H 1.08993 * 109.47511 * 210.00294 * 12 10 8 38 38 H 1.09007 * 109.47245 * 329.99982 * 12 10 8 39 39 H 0.96695 * 113.99981 * 300.00087 * 15 13 12 40 40 H 1.09003 * 109.47223 * 304.99696 * 16 13 12 41 41 H 1.09000 * 109.47383 * 65.00232 * 16 13 12 42 42 H 0.97000 * 119.99317 * 359.97438 * 17 16 13 43 43 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08001 * 126.45080 * 180.30089 * 26 7 6 45 45 H 1.08000 * 119.68021 * 0.04144 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.2194 0.0000 4 6 3.5652 1.2171 0.0005 5 6 4.2550 -0.0148 0.0005 6 7 5.5445 -0.3078 0.0068 7 6 5.6903 -1.6456 0.0008 8 6 6.9724 -2.3768 0.0010 9 8 6.9823 -3.5867 0.1204 10 7 8.1327 -1.7026 -0.1254 11 6 8.1259 -0.2392 -0.1928 12 6 9.4005 -2.4333 -0.1953 13 6 9.7242 -2.7545 -1.6558 14 1 9.8078 -1.8267 -2.2219 15 8 8.6802 -3.5580 -2.2095 16 6 11.0480 -3.5181 -1.7287 17 7 11.4179 -3.7212 -3.1317 18 6 12.5729 -4.3862 -3.4459 19 1 13.2115 -4.7607 -2.6594 20 6 12.9237 -4.5781 -4.7751 21 7 14.0342 -5.2169 -5.0771 22 14 11.8198 -3.9299 -6.1354 23 1 12.2272 -2.5457 -6.4863 24 1 11.9446 -4.8009 -7.3316 25 1 10.4096 -3.9278 -5.6697 26 6 4.4465 -2.2096 0.0001 27 7 3.5443 -1.1893 -0.0001 28 6 2.1777 -1.1699 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6656 2.1544 -0.0007 33 1 4.1122 2.1483 0.0001 34 1 8.1023 0.1710 0.8167 35 1 9.0250 0.1051 -0.7040 36 1 7.2454 0.0951 -0.7416 37 1 10.1968 -1.8205 0.2270 38 1 9.3170 -3.3610 0.3708 39 1 8.5492 -4.4009 -1.7543 40 1 11.8269 -2.9437 -1.2272 41 1 10.9370 -4.4853 -1.2386 42 1 10.8442 -3.3852 -3.8380 43 1 14.2791 -5.3513 -6.0060 44 1 4.2208 -3.2657 0.0003 45 1 1.6297 -2.1005 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725696475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:55 Heat of formation + Delta-G solvation = 34.692833 kcal Electronic energy + Delta-G solvation = -27814.518637 eV Core-core repulsion = 23834.599438 eV Total energy + Delta-G solvation = -3979.919199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24871 -39.87025 -38.14316 -37.21222 -35.28726 -34.16188 -34.02592 -32.65155 -31.39937 -29.86814 -29.29776 -27.51671 -26.82636 -25.70123 -24.12081 -23.06732 -22.57527 -21.77812 -21.15160 -19.42992 -18.27870 -17.64050 -17.38277 -16.70381 -16.56258 -16.32456 -15.78241 -15.47808 -15.07310 -15.05849 -14.80715 -14.42532 -14.26483 -14.06816 -13.65140 -13.34520 -13.20817 -13.04590 -12.89001 -12.79294 -12.55504 -12.35067 -12.15188 -12.07207 -11.76218 -11.49294 -11.43150 -11.17331 -10.80561 -10.75339 -10.40095 -10.12301 -10.02741 -9.65470 -9.49893 -9.15248 -8.84990 -8.48459 -8.26511 -7.16677 -5.70965 -3.05866 0.18842 0.78061 1.80666 2.06297 2.91850 2.97732 3.42701 3.45537 3.52338 3.54208 3.65915 3.93078 4.14037 4.26491 4.43575 4.66075 4.67316 4.80118 4.82447 4.94611 4.96883 4.98611 5.04605 5.27689 5.31611 5.32506 5.34660 5.52359 5.55678 5.61173 5.67563 5.69717 5.75995 5.82886 5.91286 5.98007 6.03432 6.21293 6.47671 6.52195 6.63204 6.71793 7.24301 7.42313 8.03622 8.14344 8.19063 8.48146 9.28240 10.00808 10.21463 11.47256 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.002253 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.249042 B =12423.662698 C =12801.146870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.071 4.071 5 C 0.217 3.783 6 N -0.459 5.459 7 C 0.015 3.985 8 C 0.605 3.395 9 O -0.535 6.535 10 N -0.592 5.592 11 C 0.075 3.925 12 C 0.084 3.916 13 C 0.082 3.918 14 H 0.096 0.904 15 O -0.552 6.552 16 C 0.130 3.870 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C -0.017 4.017 27 N -0.361 5.361 28 C 0.050 3.950 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.376 0.624 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.196 0.804 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.596 15.668 15.232 37.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.027 4.027 6 N -0.182 5.182 7 C -0.118 4.118 8 C 0.391 3.609 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.068 4.068 12 C -0.039 4.039 13 C 0.021 3.979 14 H 0.113 0.887 15 O -0.358 6.358 16 C 0.002 3.998 17 N -0.395 5.395 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.198 1.198 26 C -0.152 4.152 27 N -0.032 5.032 28 C -0.071 4.071 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.224 0.776 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.199 0.801 43 H 0.069 0.931 44 H 0.213 0.787 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -29.720 15.888 14.931 36.860 hybrid contribution -1.112 -0.547 -0.712 1.429 sum -30.832 15.341 14.219 37.258 Atomic orbital electron populations 1.20702 0.88831 1.03608 1.03111 1.19519 0.97386 0.91663 1.02238 1.21003 0.93425 0.98193 0.99729 1.20337 0.93630 0.94702 1.00451 1.21145 0.87584 0.87456 1.06562 1.71047 1.12815 1.12994 1.21296 1.20620 0.93695 0.89868 1.07577 1.16806 0.81790 0.85842 0.76433 1.90763 1.86625 1.13038 1.50764 1.47467 1.05717 1.07796 1.71297 1.22207 1.04127 0.78243 1.02250 1.22290 0.84722 0.98488 0.98385 1.22560 0.87815 0.94997 0.92510 0.88653 1.86518 1.55029 1.34285 1.59935 1.21222 0.93104 0.97309 0.88165 1.42596 1.26096 1.69697 1.01149 1.19061 0.97063 1.28087 0.93148 0.89286 1.24660 0.97254 1.00427 0.96841 1.69713 1.24261 1.46666 1.17670 0.86541 0.81124 0.78474 0.82536 1.21167 1.21794 1.19819 1.22610 0.87237 0.94097 1.11271 1.42694 1.06208 1.08689 1.45608 1.21473 0.80524 1.00681 1.04446 0.90456 0.91049 0.90580 0.83833 0.82795 0.92787 0.91753 0.87980 0.89235 0.89139 0.77620 0.94789 0.95185 0.80144 0.93122 0.78733 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.21 10.00 36.00 0.36 0.15 16 2 C -0.11 -0.51 5.85 -104.94 -0.61 -1.12 16 3 C -0.10 -0.49 9.73 -39.54 -0.38 -0.88 16 4 C -0.07 -0.50 10.11 -39.30 -0.40 -0.90 16 5 C 0.22 2.28 7.79 -156.04 -1.22 1.06 16 6 N -0.46 -5.74 7.79 -9.35 -0.07 -5.81 16 7 C 0.02 0.21 6.64 -83.45 -0.55 -0.35 16 8 C 0.60 9.22 7.13 -12.44 -0.09 9.13 16 9 O -0.54 -9.18 15.47 1.38 0.02 -9.16 16 10 N -0.59 -8.23 2.83 -182.78 -0.52 -8.74 16 11 C 0.07 0.86 9.59 59.85 0.57 1.44 16 12 C 0.08 1.17 5.14 -4.04 -0.02 1.14 16 13 C 0.08 1.38 3.27 -26.73 -0.09 1.29 16 14 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 15 O -0.55 -10.38 12.17 -39.14 -0.48 -10.85 16 16 C 0.13 2.60 5.90 -4.04 -0.02 2.57 16 17 N -0.75 -18.90 5.35 -59.90 -0.32 -19.22 16 18 C -0.24 -7.21 10.47 -15.06 -0.16 -7.36 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -30.28 13.97 55.49 0.78 -29.50 16 22 Si 0.88 23.33 27.74 -169.99 -4.71 18.62 16 23 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -7.02 6.52 56.52 0.37 -6.65 16 26 C -0.02 -0.19 11.47 -16.22 -0.19 -0.37 16 27 N -0.36 -3.47 2.93 -62.37 -0.18 -3.66 16 28 C 0.05 0.31 10.54 -16.59 -0.17 0.14 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.09 8.07 -51.93 -0.42 -0.33 16 31 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 32 H 0.14 0.30 8.06 -52.48 -0.42 -0.12 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.10 1.27 5.32 -51.93 -0.28 0.99 16 37 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.09 1.29 7.38 -51.92 -0.38 0.90 16 39 H 0.38 6.55 8.56 45.56 0.39 6.94 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.37 9.30 5.53 -40.82 -0.23 9.07 16 43 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 44 H 0.20 1.80 8.06 -52.49 -0.42 1.37 16 45 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -37.88 376.45 -8.45 -46.33 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.57 Total: 10.37 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.07 Total: 5.97 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -0.32 Total: -66.94 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.45 Total: -20.01 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.71 Total: 18.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.88 -8.45 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725696475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.020 kcal (2) G-P(sol) polarization free energy of solvation -37.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds