Wall clock time and date at job start Tue Mar 31 2020 16:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40573 * 119.83292 * 2 1 4 4 C 1.35888 * 119.73453 * 179.97438 * 3 2 1 5 5 C 1.41194 * 119.34559 * 0.02562 * 4 3 2 6 6 N 1.32231 * 132.04551 * 180.34397 * 5 4 3 7 7 C 1.34580 * 109.02015 * 180.12110 * 6 5 4 8 8 C 1.47595 * 125.91862 * 179.82146 * 7 6 5 9 9 O 1.21583 * 120.00515 * 173.16611 * 8 7 6 10 10 N 1.34781 * 119.99575 * 353.44754 * 8 7 6 11 11 C 1.46503 * 120.00130 * 3.18881 * 10 8 7 12 12 C 1.46499 * 119.99914 * 183.18495 * 10 8 7 13 13 C 1.52999 * 109.47113 * 89.99631 * 12 10 8 14 14 H 1.09008 * 109.46793 * 60.00623 * 13 12 10 15 15 O 1.42898 * 109.47623 * 300.00173 * 13 12 10 16 16 C 1.53000 * 109.47069 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.47082 * 185.00522 * 16 13 12 18 18 C 1.36931 * 120.00120 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00019 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99843 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47482 * 90.00183 * 22 20 18 24 24 H 1.48500 * 109.47229 * 210.00428 * 22 20 18 25 25 H 1.48503 * 109.47069 * 329.99983 * 22 20 18 26 26 C 1.36574 * 108.16474 * 359.56524 * 7 6 5 27 27 N 1.36191 * 107.09533 * 0.26082 * 26 7 6 28 28 C 1.34851 * 119.82737 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47081 * 89.99604 * 1 2 3 30 30 H 1.09000 * 109.47021 * 209.99796 * 1 2 3 31 31 H 1.09000 * 109.46978 * 329.99707 * 1 2 3 32 32 H 1.08004 * 120.12796 * 359.95982 * 3 2 1 33 33 H 1.08001 * 120.33139 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47208 * 84.09770 * 11 10 8 35 35 H 1.09004 * 109.46531 * 204.09645 * 11 10 8 36 36 H 1.09003 * 109.46688 * 324.09167 * 11 10 8 37 37 H 1.08993 * 109.47511 * 210.00294 * 12 10 8 38 38 H 1.09007 * 109.47245 * 329.99982 * 12 10 8 39 39 H 0.96695 * 113.99981 * 300.00087 * 15 13 12 40 40 H 1.09003 * 109.47223 * 304.99696 * 16 13 12 41 41 H 1.09000 * 109.47383 * 65.00232 * 16 13 12 42 42 H 0.97000 * 119.99317 * 359.97438 * 17 16 13 43 43 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08001 * 126.45080 * 180.30089 * 26 7 6 45 45 H 1.08000 * 119.68021 * 0.04144 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.2194 0.0000 4 6 3.5652 1.2171 0.0005 5 6 4.2550 -0.0148 0.0005 6 7 5.5445 -0.3078 0.0068 7 6 5.6903 -1.6456 0.0008 8 6 6.9724 -2.3768 0.0010 9 8 6.9823 -3.5867 0.1204 10 7 8.1327 -1.7026 -0.1254 11 6 8.1259 -0.2392 -0.1928 12 6 9.4005 -2.4333 -0.1953 13 6 9.7242 -2.7545 -1.6558 14 1 9.8078 -1.8267 -2.2219 15 8 8.6802 -3.5580 -2.2095 16 6 11.0480 -3.5181 -1.7287 17 7 11.4179 -3.7212 -3.1317 18 6 12.5729 -4.3862 -3.4459 19 1 13.2115 -4.7607 -2.6594 20 6 12.9237 -4.5781 -4.7751 21 7 14.0342 -5.2169 -5.0771 22 14 11.8198 -3.9299 -6.1354 23 1 12.2272 -2.5457 -6.4863 24 1 11.9446 -4.8009 -7.3316 25 1 10.4096 -3.9278 -5.6697 26 6 4.4465 -2.2096 0.0001 27 7 3.5443 -1.1893 -0.0001 28 6 2.1777 -1.1699 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6656 2.1544 -0.0007 33 1 4.1122 2.1483 0.0001 34 1 8.1023 0.1710 0.8167 35 1 9.0250 0.1051 -0.7040 36 1 7.2454 0.0951 -0.7416 37 1 10.1968 -1.8205 0.2270 38 1 9.3170 -3.3610 0.3708 39 1 8.5492 -4.4009 -1.7543 40 1 11.8269 -2.9437 -1.2272 41 1 10.9370 -4.4853 -1.2386 42 1 10.8442 -3.3852 -3.8380 43 1 14.2791 -5.3513 -6.0060 44 1 4.2208 -3.2657 0.0003 45 1 1.6297 -2.1005 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725696475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:54 Heat of formation + Delta-G solvation = 7.939374 kcal Electronic energy + Delta-G solvation = -27815.678754 eV Core-core repulsion = 23834.599438 eV Total energy + Delta-G solvation = -3981.079316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.93854 -40.94836 -38.96113 -38.40413 -36.51745 -35.95879 -34.76359 -33.50702 -33.13105 -31.27507 -30.05284 -28.34527 -27.84445 -26.87870 -24.98753 -24.28206 -23.30779 -23.05873 -22.57272 -20.37875 -19.81484 -19.04261 -18.12308 -17.72997 -17.45396 -17.25526 -16.84615 -16.61487 -16.40389 -16.17543 -15.90405 -15.49153 -15.34514 -15.01707 -14.95236 -14.49340 -14.36036 -14.20945 -13.91790 -13.78230 -13.43619 -13.29662 -13.23289 -13.15073 -12.85989 -12.66307 -12.46381 -12.39823 -12.29066 -11.97467 -11.92329 -11.86651 -11.40349 -11.25808 -11.03380 -10.82836 -9.86522 -9.54707 -9.32882 -8.92103 -8.05560 -5.38372 -0.36207 0.16842 0.96734 1.36044 1.38534 1.40963 1.47346 1.96696 2.27721 2.45979 2.52507 2.96185 3.23820 3.30906 3.42907 3.63497 3.66870 3.82365 3.95430 3.99269 4.06192 4.14403 4.22640 4.24547 4.44319 4.45698 4.49892 4.66497 4.70883 4.77994 4.83349 4.88251 4.90313 4.99597 5.07580 5.19358 5.23590 5.31292 5.33050 5.55596 5.56854 5.71750 5.92168 6.18448 6.29192 6.55671 6.74581 7.04761 7.09613 7.81457 8.00108 9.15665 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.002253 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.249042 B =12423.662698 C =12801.146870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C -0.080 4.080 4 C -0.095 4.095 5 C 0.205 3.795 6 N -0.483 5.483 7 C -0.017 4.017 8 C 0.597 3.403 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.077 3.923 12 C 0.092 3.908 13 C 0.093 3.907 14 H 0.096 0.904 15 O -0.568 6.568 16 C 0.127 3.873 17 N -0.754 5.754 18 C -0.235 4.235 19 H 0.061 0.939 20 C -0.062 4.062 21 N -0.981 5.981 22 Si 0.954 3.046 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.262 1.262 26 C -0.024 4.024 27 N -0.362 5.362 28 C 0.027 3.973 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.380 0.620 40 H 0.049 0.951 41 H 0.029 0.971 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.206 0.794 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.056 18.142 15.549 41.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.114 4.114 5 C -0.040 4.040 6 N -0.205 5.205 7 C -0.149 4.149 8 C 0.385 3.615 9 O -0.446 6.446 10 N -0.323 5.323 11 C -0.065 4.065 12 C -0.031 4.031 13 C 0.033 3.967 14 H 0.114 0.886 15 O -0.374 6.374 16 C 0.000 4.000 17 N -0.400 5.400 18 C -0.366 4.366 19 H 0.079 0.921 20 C -0.254 4.254 21 N -0.631 5.631 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.187 1.187 26 C -0.160 4.160 27 N -0.032 5.032 28 C -0.093 4.093 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.187 0.813 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.228 0.772 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.222 0.778 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -33.217 18.405 15.290 40.937 hybrid contribution -0.207 -1.239 -0.699 1.438 sum -33.424 17.166 14.591 40.308 Atomic orbital electron populations 1.20808 0.86329 1.04943 1.04028 1.20017 0.99024 0.91068 0.99768 1.21514 0.92711 0.99761 0.96384 1.20658 0.94666 0.94027 1.02095 1.21708 0.87431 0.88821 1.06036 1.70937 1.14275 1.12421 1.22907 1.20486 0.93568 0.90694 1.10161 1.17172 0.82743 0.85726 0.75850 1.90721 1.87227 1.14263 1.52339 1.47563 1.05322 1.08653 1.70757 1.22269 1.04434 0.76860 1.02925 1.22169 0.85729 0.99114 0.96090 1.22474 0.85687 0.94030 0.94521 0.88571 1.86489 1.55491 1.34787 1.60680 1.21426 0.95220 0.97949 0.85394 1.42630 1.24780 1.69193 1.03417 1.19072 0.97785 1.27177 0.92539 0.92126 1.25464 0.98954 1.01479 0.99490 1.69876 1.26399 1.48714 1.18139 0.85411 0.79435 0.77982 0.78982 1.20079 1.21976 1.18748 1.22732 0.87166 0.94884 1.11251 1.42802 1.07258 1.07925 1.45238 1.22108 0.79306 1.02676 1.05182 0.89544 0.90077 0.89003 0.80284 0.81301 0.91858 0.90379 0.88725 0.86418 0.89664 0.77207 0.93346 0.95286 0.80148 0.93265 0.77767 0.79461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 10.00 71.24 0.71 0.72 16 2 C -0.10 -0.62 5.85 -20.07 -0.12 -0.74 16 3 C -0.08 -0.52 9.73 22.29 0.22 -0.30 16 4 C -0.09 -1.16 10.11 22.45 0.23 -0.93 16 5 C 0.21 4.20 7.79 134.21 1.05 5.24 16 6 N -0.48 -12.18 7.79 -183.48 -1.43 -13.61 16 7 C -0.02 -0.47 6.64 40.80 0.27 -0.20 16 8 C 0.60 18.61 7.13 86.71 0.62 19.23 16 9 O -0.57 -20.05 15.47 -0.24 0.00 -20.05 16 10 N -0.59 -16.28 2.83 -850.46 -2.40 -18.68 16 11 C 0.08 1.73 9.59 127.77 1.22 2.95 16 12 C 0.09 2.46 5.14 86.38 0.44 2.91 16 13 C 0.09 3.06 3.27 30.59 0.10 3.16 16 14 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 15 O -0.57 -21.21 12.17 -145.24 -1.77 -22.98 16 16 C 0.13 4.98 5.90 86.38 0.51 5.49 16 17 N -0.75 -37.66 5.35 -343.43 -1.84 -39.50 16 18 C -0.23 -14.03 10.47 84.03 0.88 -13.15 16 19 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 20 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.98 -64.71 13.97 21.65 0.30 -64.41 16 22 Si 0.95 48.50 27.74 68.60 1.90 50.40 16 23 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 25 H -0.26 -12.75 6.52 99.48 0.65 -12.10 16 26 C -0.02 -0.55 11.47 83.63 0.96 0.41 16 27 N -0.36 -6.73 2.93 -351.25 -1.03 -7.76 16 28 C 0.03 0.29 10.54 83.16 0.88 1.17 16 29 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.08 -0.11 8.07 -2.39 -0.02 -0.12 16 31 H 0.09 -0.23 8.09 -2.39 -0.02 -0.25 16 32 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 36 H 0.09 2.34 5.32 -2.39 -0.01 2.33 16 37 H 0.12 2.46 8.07 -2.39 -0.02 2.44 16 38 H 0.08 2.40 7.38 -2.38 -0.02 2.38 16 39 H 0.38 13.38 8.56 -74.06 -0.63 12.74 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 18.15 5.53 -92.71 -0.51 17.63 16 43 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 44 H 0.21 3.93 8.06 -2.91 -0.02 3.90 16 45 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -83.80 376.45 1.99 -81.81 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.18 Total: 32.20 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 8.43 Total: 22.59 kcal Atomic # 7 Polarization: -137.57 SS G_CDS: -6.40 Total: -143.97 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.77 Total: -43.03 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.90 Total: 50.40 kcal Total: -83.80 1.99 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725696475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.750 kcal (2) G-P(sol) polarization free energy of solvation -83.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds