Wall clock time and date at job start Tue Mar 31 2020 16:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40581 * 119.82588 * 2 1 4 4 C 1.35896 * 119.72833 * 179.97438 * 3 2 1 5 5 C 1.41188 * 119.34491 * 359.97438 * 4 3 2 6 6 N 1.32234 * 132.04502 * 180.29723 * 5 4 3 7 7 C 1.34583 * 109.02831 * 180.16566 * 6 5 4 8 8 C 1.47590 * 125.92462 * 179.82692 * 7 6 5 9 9 O 1.21588 * 120.00191 * 185.63097 * 8 7 6 10 10 N 1.34780 * 119.99252 * 5.63267 * 8 7 6 11 11 C 1.46499 * 120.00528 * 356.06665 * 10 8 7 12 12 C 1.46501 * 119.99495 * 176.06505 * 10 8 7 13 13 C 1.53004 * 109.47162 * 89.99969 * 12 10 8 14 14 H 1.09006 * 109.47083 * 305.00413 * 13 12 10 15 15 O 1.42898 * 109.47043 * 64.99905 * 13 12 10 16 16 C 1.52999 * 109.47307 * 185.00217 * 13 12 10 17 17 N 1.46500 * 109.46894 * 180.02562 * 16 13 12 18 18 C 1.36933 * 119.99978 * 179.72284 * 17 16 13 19 19 H 1.08007 * 119.99898 * 0.27252 * 18 17 16 20 20 C 1.38811 * 120.00381 * 180.27431 * 18 17 16 21 21 N 1.31622 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00297 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47080 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.47389 * 240.00123 * 22 20 18 26 26 C 1.36582 * 108.15706 * 359.56630 * 7 6 5 27 27 N 1.36197 * 107.09686 * 0.26188 * 26 7 6 28 28 C 1.34844 * 119.83073 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47087 * 89.99540 * 1 2 3 30 30 H 1.08998 * 109.46463 * 209.99762 * 1 2 3 31 31 H 1.09000 * 109.47271 * 329.99539 * 1 2 3 32 32 H 1.07990 * 120.13437 * 359.95753 * 3 2 1 33 33 H 1.07995 * 120.32763 * 179.97438 * 4 3 2 34 34 H 1.08991 * 109.46993 * 275.71827 * 11 10 8 35 35 H 1.09002 * 109.46901 * 35.71903 * 11 10 8 36 36 H 1.08997 * 109.47030 * 155.71689 * 11 10 8 37 37 H 1.09003 * 109.47485 * 330.00322 * 12 10 8 38 38 H 1.08998 * 109.47481 * 210.00073 * 12 10 8 39 39 H 0.96705 * 113.99912 * 59.99737 * 15 13 12 40 40 H 1.08990 * 109.47431 * 60.00132 * 16 13 12 41 41 H 1.08999 * 109.46965 * 299.99778 * 16 13 12 42 42 H 0.96998 * 120.00150 * 0.02562 * 17 16 13 43 43 H 0.97001 * 120.00215 * 179.97438 * 21 20 18 44 44 H 1.08003 * 126.44916 * 180.29555 * 26 7 6 45 45 H 1.08002 * 119.68096 * 0.05714 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2196 0.0000 4 6 3.5652 1.2173 0.0005 5 6 4.2550 -0.0146 0.0016 6 7 5.5445 -0.3075 0.0074 7 6 5.6906 -1.6454 0.0020 8 6 6.9727 -2.3765 0.0020 9 8 6.9820 -3.5875 -0.1065 10 7 8.1331 -1.7016 0.1225 11 6 8.1278 -0.2373 0.1667 12 6 9.3998 -2.4325 0.2094 13 6 9.9645 -2.6432 -1.1969 14 1 9.2182 -3.1391 -1.8176 15 8 10.2968 -1.3777 -1.7714 16 6 11.2208 -3.5128 -1.1171 17 7 11.7618 -3.7140 -2.4636 18 6 12.8958 -4.4606 -2.6413 19 1 13.3890 -4.9048 -1.7893 20 6 13.4117 -4.6466 -3.9166 21 7 12.8110 -4.1048 -4.9549 22 14 14.9590 -5.6645 -4.1589 23 1 15.4377 -6.1587 -2.8428 24 1 14.6581 -6.8203 -5.0415 25 1 16.0113 -4.8244 -4.7851 26 6 4.4466 -2.2094 0.0022 27 7 3.5444 -1.1891 0.0020 28 6 2.1778 -1.1698 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6656 2.1544 -0.0007 33 1 4.1121 2.1485 0.0001 34 1 8.1122 0.1567 -0.8494 35 1 7.2437 0.1068 0.7035 36 1 9.0235 0.1140 0.6788 37 1 9.2294 -3.4002 0.6812 38 1 10.1105 -1.8585 0.8040 39 1 10.9572 -0.8796 -1.2703 40 1 10.9673 -4.4781 -0.6790 41 1 11.9671 -3.0168 -0.4965 42 1 11.3191 -3.3147 -3.2288 43 1 13.1717 -4.2344 -5.8460 44 1 4.2210 -3.2656 0.0031 45 1 1.6298 -2.1005 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725696477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:59 Heat of formation + Delta-G solvation = 32.019065 kcal Electronic energy + Delta-G solvation = -27595.300565 eV Core-core repulsion = 23615.265422 eV Total energy + Delta-G solvation = -3980.035143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.21520 -39.81034 -38.09411 -37.23514 -35.14763 -34.09644 -33.87793 -32.62660 -31.24562 -29.65132 -29.20234 -27.44065 -26.55650 -25.56530 -24.08132 -23.16595 -22.56123 -21.99608 -21.06306 -19.39155 -18.21380 -17.33986 -17.07393 -16.67457 -16.49374 -16.30243 -15.68051 -15.49051 -15.03054 -14.91024 -14.77409 -14.36831 -14.26430 -14.05651 -13.60601 -13.42614 -13.03748 -12.85303 -12.82204 -12.74855 -12.52961 -12.32085 -12.06203 -11.92104 -11.73604 -11.40287 -11.37045 -10.86107 -10.77355 -10.54944 -10.39299 -10.07481 -9.94894 -9.70591 -9.56776 -9.12161 -8.81969 -8.40313 -8.20399 -6.82721 -5.66691 -2.95740 0.22044 0.81103 1.82908 2.09463 2.95386 3.04480 3.42674 3.49054 3.53832 3.56721 3.69894 3.97039 4.17152 4.29761 4.47452 4.64514 4.71334 4.82870 4.90488 4.97768 4.99644 5.03963 5.17946 5.28557 5.35371 5.37319 5.43048 5.55854 5.63974 5.72251 5.78641 5.80360 5.88446 6.00921 6.03694 6.11703 6.27903 6.36758 6.53326 6.64724 6.69912 6.87014 7.28433 7.47490 7.76842 8.16951 8.21285 8.51606 9.62766 10.22088 10.58064 11.55864 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.002001 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.082357 B =13993.047351 C =14147.678292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.070 4.070 5 C 0.217 3.783 6 N -0.457 5.457 7 C 0.015 3.985 8 C 0.594 3.406 9 O -0.535 6.535 10 N -0.589 5.589 11 C 0.077 3.923 12 C 0.087 3.913 13 C 0.086 3.914 14 H 0.100 0.900 15 O -0.549 6.549 16 C 0.127 3.873 17 N -0.725 5.725 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.018 4.018 27 N -0.361 5.361 28 C 0.049 3.951 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.366 0.634 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.389 0.611 43 H 0.254 0.746 44 H 0.196 0.804 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.889 13.724 15.523 34.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.027 4.027 6 N -0.179 5.179 7 C -0.118 4.118 8 C 0.381 3.619 9 O -0.412 6.412 10 N -0.319 5.319 11 C -0.065 4.065 12 C -0.036 4.036 13 C 0.026 3.974 14 H 0.118 0.882 15 O -0.353 6.353 16 C -0.002 4.002 17 N -0.370 5.370 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.153 4.153 27 N -0.032 5.032 28 C -0.072 4.072 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.212 0.788 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.213 0.787 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.479 13.270 15.069 34.033 hybrid contribution 0.573 -0.859 -0.116 1.039 sum -26.906 12.411 14.953 33.190 Atomic orbital electron populations 1.20701 0.88850 1.03584 1.03106 1.19517 0.97369 0.91672 1.02238 1.21003 0.93425 0.98179 0.99795 1.20343 0.93621 0.94720 1.00339 1.21167 0.87590 0.87455 1.06534 1.71050 1.12725 1.12932 1.21146 1.20609 0.93611 0.89905 1.07644 1.16943 0.81984 0.85957 0.77058 1.90828 1.86806 1.13024 1.50544 1.47511 1.05437 1.08048 1.70916 1.22238 1.03289 0.77971 1.03036 1.22315 0.84293 0.98378 0.98629 1.22540 0.97101 0.84852 0.92920 0.88183 1.86629 1.63079 1.31168 1.54400 1.21223 0.92429 0.96488 0.90084 1.42255 1.30690 1.61920 1.02133 1.19283 1.01525 1.23654 0.92637 0.91206 1.24768 0.99482 1.01282 0.95595 1.69704 1.41209 1.48869 0.98068 0.86108 0.82953 0.79573 0.77502 1.20591 1.21907 1.21909 1.22612 0.87232 0.94103 1.11369 1.42700 1.06201 1.08685 1.45610 1.21465 0.80525 1.00667 1.04494 0.90460 0.91068 0.90591 0.83840 0.82761 0.92095 0.88130 0.92202 0.88896 0.89962 0.78791 0.95493 0.96295 0.77663 0.93616 0.78709 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.23 10.00 36.01 0.36 0.13 16 2 C -0.11 -0.53 5.85 -104.94 -0.61 -1.14 16 3 C -0.10 -0.52 9.73 -39.54 -0.38 -0.90 16 4 C -0.07 -0.52 10.11 -39.30 -0.40 -0.91 16 5 C 0.22 2.35 7.79 -156.04 -1.22 1.13 16 6 N -0.46 -5.91 7.76 -9.35 -0.07 -5.99 16 7 C 0.02 0.21 6.65 -83.44 -0.55 -0.34 16 8 C 0.59 9.62 7.67 -12.44 -0.10 9.52 16 9 O -0.54 -10.06 16.49 5.29 0.09 -9.97 16 10 N -0.59 -8.67 2.84 -182.79 -0.52 -9.19 16 11 C 0.08 0.95 9.28 59.85 0.56 1.51 16 12 C 0.09 1.28 5.07 -4.04 -0.02 1.26 16 13 C 0.09 1.59 3.30 -26.73 -0.09 1.50 16 14 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 15 O -0.55 -10.08 12.64 -35.23 -0.45 -10.53 16 16 C 0.13 2.70 5.92 -4.04 -0.02 2.67 16 17 N -0.73 -19.76 5.49 -59.91 -0.33 -20.09 16 18 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.70 13.06 55.49 0.72 -28.97 16 22 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 C -0.02 -0.21 11.47 -16.21 -0.19 -0.39 16 27 N -0.36 -3.56 2.93 -62.37 -0.18 -3.74 16 28 C 0.05 0.32 10.54 -16.60 -0.17 0.15 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.10 8.07 -51.93 -0.42 -0.32 16 31 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 32 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.22 5.23 -51.93 -0.27 0.95 16 36 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.09 1.42 7.48 -51.93 -0.39 1.03 16 38 H 0.08 0.98 7.86 -51.93 -0.41 0.58 16 39 H 0.37 5.40 9.05 45.56 0.41 5.81 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.39 11.45 7.54 -40.82 -0.31 11.15 16 43 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.20 1.84 8.06 -52.48 -0.42 1.42 16 45 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -38.14 381.18 -8.66 -46.81 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.56 Total: 11.24 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -3.09 Total: 6.41 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -0.38 Total: -67.97 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.36 Total: -20.50 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.14 -8.66 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725696477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.826 kcal (2) G-P(sol) polarization free energy of solvation -38.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds