Wall clock time and date at job start Tue Mar 31 2020 16:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40581 * 119.82588 * 2 1 4 4 C 1.35896 * 119.72833 * 179.97438 * 3 2 1 5 5 C 1.41188 * 119.34491 * 359.97438 * 4 3 2 6 6 N 1.32234 * 132.04502 * 180.29723 * 5 4 3 7 7 C 1.34583 * 109.02831 * 180.16566 * 6 5 4 8 8 C 1.47590 * 125.92462 * 179.82692 * 7 6 5 9 9 O 1.21588 * 120.00191 * 185.63097 * 8 7 6 10 10 N 1.34780 * 119.99252 * 5.63267 * 8 7 6 11 11 C 1.46499 * 120.00528 * 356.06665 * 10 8 7 12 12 C 1.46501 * 119.99495 * 176.06505 * 10 8 7 13 13 C 1.53004 * 109.47162 * 89.99969 * 12 10 8 14 14 H 1.09006 * 109.47083 * 305.00413 * 13 12 10 15 15 O 1.42898 * 109.47043 * 64.99905 * 13 12 10 16 16 C 1.52999 * 109.47307 * 185.00217 * 13 12 10 17 17 N 1.46500 * 109.46894 * 180.02562 * 16 13 12 18 18 C 1.36933 * 119.99978 * 179.72284 * 17 16 13 19 19 H 1.08007 * 119.99898 * 0.27252 * 18 17 16 20 20 C 1.38811 * 120.00381 * 180.27431 * 18 17 16 21 21 N 1.31622 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00297 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47080 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.47389 * 240.00123 * 22 20 18 26 26 C 1.36582 * 108.15706 * 359.56630 * 7 6 5 27 27 N 1.36197 * 107.09686 * 0.26188 * 26 7 6 28 28 C 1.34844 * 119.83073 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47087 * 89.99540 * 1 2 3 30 30 H 1.08998 * 109.46463 * 209.99762 * 1 2 3 31 31 H 1.09000 * 109.47271 * 329.99539 * 1 2 3 32 32 H 1.07990 * 120.13437 * 359.95753 * 3 2 1 33 33 H 1.07995 * 120.32763 * 179.97438 * 4 3 2 34 34 H 1.08991 * 109.46993 * 275.71827 * 11 10 8 35 35 H 1.09002 * 109.46901 * 35.71903 * 11 10 8 36 36 H 1.08997 * 109.47030 * 155.71689 * 11 10 8 37 37 H 1.09003 * 109.47485 * 330.00322 * 12 10 8 38 38 H 1.08998 * 109.47481 * 210.00073 * 12 10 8 39 39 H 0.96705 * 113.99912 * 59.99737 * 15 13 12 40 40 H 1.08990 * 109.47431 * 60.00132 * 16 13 12 41 41 H 1.08999 * 109.46965 * 299.99778 * 16 13 12 42 42 H 0.96998 * 120.00150 * 0.02562 * 17 16 13 43 43 H 0.97001 * 120.00215 * 179.97438 * 21 20 18 44 44 H 1.08003 * 126.44916 * 180.29555 * 26 7 6 45 45 H 1.08002 * 119.68096 * 0.05714 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2196 0.0000 4 6 3.5652 1.2173 0.0005 5 6 4.2550 -0.0146 0.0016 6 7 5.5445 -0.3075 0.0074 7 6 5.6906 -1.6454 0.0020 8 6 6.9727 -2.3765 0.0020 9 8 6.9820 -3.5875 -0.1065 10 7 8.1331 -1.7016 0.1225 11 6 8.1278 -0.2373 0.1667 12 6 9.3998 -2.4325 0.2094 13 6 9.9645 -2.6432 -1.1969 14 1 9.2182 -3.1391 -1.8176 15 8 10.2968 -1.3777 -1.7714 16 6 11.2208 -3.5128 -1.1171 17 7 11.7618 -3.7140 -2.4636 18 6 12.8958 -4.4606 -2.6413 19 1 13.3890 -4.9048 -1.7893 20 6 13.4117 -4.6466 -3.9166 21 7 12.8110 -4.1048 -4.9549 22 14 14.9590 -5.6645 -4.1589 23 1 15.4377 -6.1587 -2.8428 24 1 14.6581 -6.8203 -5.0415 25 1 16.0113 -4.8244 -4.7851 26 6 4.4466 -2.2094 0.0022 27 7 3.5444 -1.1891 0.0020 28 6 2.1778 -1.1698 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6656 2.1544 -0.0007 33 1 4.1121 2.1485 0.0001 34 1 8.1122 0.1567 -0.8494 35 1 7.2437 0.1068 0.7035 36 1 9.0235 0.1140 0.6788 37 1 9.2294 -3.4002 0.6812 38 1 10.1105 -1.8585 0.8040 39 1 10.9572 -0.8796 -1.2703 40 1 10.9673 -4.4781 -0.6790 41 1 11.9671 -3.0168 -0.4965 42 1 11.3191 -3.3147 -3.2288 43 1 13.1717 -4.2344 -5.8460 44 1 4.2210 -3.2656 0.0031 45 1 1.6298 -2.1005 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725696477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:58 Heat of formation + Delta-G solvation = 4.526381 kcal Electronic energy + Delta-G solvation = -27596.492737 eV Core-core repulsion = 23615.265422 eV Total energy + Delta-G solvation = -3981.227315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.95312 -40.97915 -38.98841 -38.46761 -36.48474 -35.83020 -34.76806 -33.30377 -33.08056 -31.09860 -30.05519 -28.20241 -27.77869 -26.86749 -25.14950 -24.44162 -23.35466 -23.07641 -22.59890 -20.41204 -19.25274 -19.04151 -18.11343 -17.72122 -17.53272 -17.30653 -16.75777 -16.59801 -16.43413 -16.17724 -15.89236 -15.50216 -15.32935 -15.07402 -14.86699 -14.48835 -14.35672 -14.18651 -13.84273 -13.65765 -13.42449 -13.24898 -13.15467 -12.99496 -12.79995 -12.63152 -12.45745 -12.38185 -12.15975 -12.01930 -11.92800 -11.83168 -11.53020 -11.19807 -11.00575 -10.88495 -9.88590 -9.54615 -9.03166 -8.92925 -7.95453 -5.26159 -0.37402 0.15854 0.92240 1.39410 1.45474 1.47963 1.58113 1.96508 2.21646 2.49745 2.54953 2.95001 3.32900 3.35490 3.48070 3.65722 3.72113 3.82841 3.95836 4.00033 4.09352 4.16381 4.21723 4.36883 4.44184 4.51917 4.55033 4.67144 4.71234 4.76206 4.86345 4.89129 4.91116 5.02544 5.09677 5.18915 5.24222 5.31727 5.34911 5.46018 5.55859 5.58247 5.91469 6.24677 6.25756 6.54406 6.88822 7.02734 7.30786 8.06531 8.30234 9.28478 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.002001 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.082357 B =13993.047351 C =14147.678292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.095 4.095 3 C -0.079 4.079 4 C -0.095 4.095 5 C 0.207 3.793 6 N -0.482 5.482 7 C -0.018 4.018 8 C 0.586 3.414 9 O -0.575 6.575 10 N -0.589 5.589 11 C 0.083 3.917 12 C 0.096 3.904 13 C 0.103 3.897 14 H 0.061 0.939 15 O -0.563 6.563 16 C 0.126 3.874 17 N -0.742 5.742 18 C -0.247 4.247 19 H 0.080 0.920 20 C -0.082 4.082 21 N -0.972 5.972 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.291 1.291 26 C -0.022 4.022 27 N -0.362 5.362 28 C 0.027 3.973 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.384 0.616 40 H 0.027 0.973 41 H 0.044 0.956 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.207 0.793 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.485 15.192 17.188 37.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.102 4.102 4 C -0.114 4.114 5 C -0.039 4.039 6 N -0.205 5.205 7 C -0.150 4.150 8 C 0.374 3.626 9 O -0.455 6.455 10 N -0.318 5.318 11 C -0.059 4.059 12 C -0.027 4.027 13 C 0.042 3.958 14 H 0.079 0.921 15 O -0.369 6.369 16 C -0.002 4.002 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.274 4.274 21 N -0.623 5.623 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.218 1.218 26 C -0.158 4.158 27 N -0.032 5.032 28 C -0.093 4.093 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.187 0.813 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.232 0.768 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.224 0.776 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -29.083 14.770 16.801 36.691 hybrid contribution 0.818 -1.178 -0.596 1.553 sum -28.264 13.592 16.205 35.302 Atomic orbital electron populations 1.20812 0.86259 1.04986 1.04039 1.20028 0.99055 0.91036 0.99680 1.21525 0.92654 0.99798 0.96260 1.20664 0.94694 0.93978 1.02105 1.21727 0.87359 0.88874 1.05904 1.70913 1.14356 1.12300 1.22913 1.20393 0.93325 0.90773 1.10543 1.17384 0.83175 0.85770 0.76248 1.90779 1.87558 1.14643 1.52518 1.47623 1.05013 1.08973 1.70205 1.22281 1.04840 0.76403 1.02385 1.22202 0.85068 0.99142 0.96293 1.22201 0.94898 0.84252 0.94403 0.92131 1.86596 1.63880 1.31039 1.55399 1.21415 0.93958 0.97238 0.87577 1.42478 1.30387 1.61738 1.03858 1.19749 1.01906 1.23162 0.93056 0.90179 1.25710 1.03166 1.03110 0.95375 1.69885 1.43175 1.50868 0.98373 0.84964 0.78676 0.77512 0.77910 1.18650 1.22151 1.21767 1.22729 0.87076 0.94931 1.11113 1.42804 1.07291 1.07849 1.45216 1.22120 0.79218 1.02732 1.05190 0.89553 0.90032 0.88947 0.80198 0.81288 0.93754 0.87801 0.89492 0.89502 0.86137 0.76760 0.95548 0.93868 0.79540 0.94038 0.77649 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 10.00 71.24 0.71 0.68 16 2 C -0.10 -0.66 5.85 -20.07 -0.12 -0.78 16 3 C -0.08 -0.55 9.73 22.30 0.22 -0.33 16 4 C -0.09 -1.24 10.11 22.45 0.23 -1.01 16 5 C 0.21 4.45 7.79 134.20 1.05 5.50 16 6 N -0.48 -12.95 7.76 -183.48 -1.42 -14.37 16 7 C -0.02 -0.54 6.65 40.80 0.27 -0.27 16 8 C 0.59 20.09 7.67 86.71 0.66 20.76 16 9 O -0.57 -23.08 16.49 -3.99 -0.07 -23.14 16 10 N -0.59 -17.72 2.84 -850.48 -2.41 -20.13 16 11 C 0.08 2.03 9.28 127.77 1.19 3.22 16 12 C 0.10 2.81 5.07 86.38 0.44 3.25 16 13 C 0.10 3.88 3.30 30.60 0.10 3.98 16 14 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 15 O -0.56 -20.82 12.64 -148.98 -1.88 -22.70 16 16 C 0.13 5.35 5.92 86.38 0.51 5.86 16 17 N -0.74 -41.14 5.49 -343.46 -1.89 -43.03 16 18 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 21 N -0.97 -63.53 13.06 21.65 0.28 -63.25 16 22 Si 0.98 48.25 29.55 68.60 2.03 50.28 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 26 C -0.02 -0.53 11.47 83.63 0.96 0.43 16 27 N -0.36 -7.04 2.93 -351.24 -1.03 -8.07 16 28 C 0.03 0.31 10.54 83.16 0.88 1.18 16 29 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 -0.09 8.07 -2.39 -0.02 -0.10 16 31 H 0.09 -0.21 8.09 -2.39 -0.02 -0.23 16 32 H 0.18 -0.06 8.06 -2.92 -0.02 -0.08 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 2.55 5.23 -2.39 -0.01 2.54 16 36 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 37 H 0.09 2.68 7.48 -2.39 -0.02 2.66 16 38 H 0.12 2.59 7.86 -2.39 -0.02 2.57 16 39 H 0.38 10.90 9.05 -74.05 -0.67 10.23 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.37 22.75 7.54 -92.71 -0.70 22.05 16 43 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.21 4.18 8.06 -2.91 -0.02 4.15 16 45 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -86.36 381.18 1.67 -84.69 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.34 Total: 35.56 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 8.40 Total: 24.16 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -6.47 Total: -148.86 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.95 Total: -45.84 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -86.36 1.67 -84.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725696477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.220 kcal (2) G-P(sol) polarization free energy of solvation -86.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds