Wall clock time and date at job start Tue Mar 31 2020 16:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38170 * 119.54816 * 2 1 4 4 C 1.39805 * 118.99985 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92248 * 179.72980 * 4 3 2 6 6 O 1.21516 * 120.00300 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99922 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00272 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47263 * 179.97438 * 8 7 5 10 10 C 1.53934 * 113.73604 * 271.72942 * 9 8 7 11 11 N 1.47966 * 86.17913 * 221.92133 * 10 9 8 12 12 C 1.46899 * 110.99837 * 137.58677 * 11 10 9 13 13 C 1.50695 * 109.47356 * 70.63598 * 12 11 10 14 14 O 1.21296 * 120.00030 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00336 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00446 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99652 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99881 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00535 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99707 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47220 * 60.00375 * 20 18 16 22 22 H 1.48504 * 109.46821 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47145 * 299.99903 * 20 18 16 24 24 C 1.47959 * 90.76458 * 24.69178 * 11 10 9 25 25 C 1.39836 * 118.15150 * 359.97438 * 4 3 2 26 26 C 1.38126 * 119.00546 * 359.97438 * 25 4 3 27 27 N 1.31790 * 119.55567 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46853 * 89.99890 * 1 2 3 29 29 H 1.08993 * 109.47110 * 209.99514 * 1 2 3 30 30 H 1.09001 * 109.47453 * 330.00234 * 1 2 3 31 31 H 1.07997 * 120.50400 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99902 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.47490 * 300.00142 * 8 7 5 34 34 H 1.09003 * 109.46956 * 60.00174 * 8 7 5 35 35 H 1.09001 * 112.93538 * 43.43887 * 9 8 7 36 36 H 1.08996 * 113.75730 * 336.23807 * 10 9 8 37 37 H 1.08998 * 113.75781 * 107.60827 * 10 9 8 38 38 H 1.08994 * 109.47315 * 190.63977 * 12 11 10 39 39 H 1.09001 * 109.47136 * 310.63597 * 12 11 10 40 40 H 0.97007 * 119.99836 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00528 * 179.97438 * 19 18 16 42 42 H 1.08994 * 113.75752 * 220.98973 * 24 11 10 43 43 H 1.08998 * 113.75950 * 89.62749 * 24 11 10 44 44 H 1.08001 * 120.49571 * 179.97438 * 25 4 3 45 45 H 1.07996 * 119.55337 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1886 0.0005 5 6 4.3598 2.4521 -0.0054 6 8 3.7795 3.5198 -0.0114 7 7 5.7071 2.4175 -0.0053 8 6 6.4720 3.6670 -0.0118 9 6 7.9685 3.3488 -0.0096 10 6 8.5653 3.1860 1.4000 11 7 9.7186 3.9625 0.8938 12 6 10.1631 4.9515 1.8848 13 6 10.8155 4.2431 3.0439 14 8 10.9022 3.0332 3.0441 15 7 11.3037 4.9538 4.0798 16 6 11.8968 4.3092 5.1345 17 1 11.9732 3.2320 5.1350 18 6 12.3995 5.0420 6.2026 19 7 12.3061 6.3528 6.2022 20 14 13.2083 4.1637 7.6393 21 1 14.3791 3.3912 7.1517 22 1 13.6581 5.1637 8.6409 23 1 12.2313 3.2384 8.2673 24 6 8.8665 4.5925 -0.1388 25 6 4.2343 -0.0506 0.0016 26 6 3.4741 -1.2038 0.0026 27 7 2.1571 -1.1464 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6493 2.1378 -0.0004 32 1 6.1704 1.5653 -0.0009 33 1 6.2234 4.2406 -0.9047 34 1 6.2235 4.2497 0.8753 35 1 8.2327 2.5438 -0.6954 36 1 7.9991 3.6975 2.1783 37 1 8.8089 2.1552 1.6573 38 1 10.8801 5.6308 1.4240 39 1 9.3038 5.5186 2.2428 40 1 11.2347 5.9214 4.0795 41 1 12.6567 6.8643 6.9481 42 1 9.3507 4.6855 -1.1108 43 1 8.3884 5.5154 0.1895 44 1 5.3130 -0.1051 0.0017 45 1 3.9654 -2.1656 0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732136089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:12 Heat of formation + Delta-G solvation = -0.180014 kcal Electronic energy + Delta-G solvation = -26809.526230 eV Core-core repulsion = 22828.094830 eV Total energy + Delta-G solvation = -3981.431399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06279 -40.21680 -39.25840 -37.74654 -35.17512 -33.93897 -33.57345 -32.80835 -31.38293 -30.78106 -28.10359 -27.66396 -26.03689 -25.26442 -24.29160 -23.22956 -22.47641 -20.86757 -19.66613 -19.24140 -18.22373 -17.84858 -17.20225 -16.29173 -16.12258 -16.01900 -15.72948 -15.63891 -15.22281 -14.90327 -14.80674 -14.57678 -14.28981 -14.11882 -13.71940 -13.58090 -13.37004 -13.04656 -12.79492 -12.68623 -12.55584 -12.19008 -12.11782 -11.76094 -11.52096 -11.39596 -11.07556 -10.77183 -10.68796 -10.51290 -10.45435 -10.30711 -10.23120 -9.89348 -9.51881 -9.43002 -9.41275 -8.70392 -8.26485 -7.98863 -6.43762 -3.84856 0.29527 0.63210 2.51962 2.67944 3.18199 3.24158 3.28310 3.40476 3.82347 3.85555 3.93965 4.09714 4.19456 4.25477 4.34915 4.49493 4.55600 4.60763 4.88599 4.94196 5.02670 5.06126 5.17481 5.20272 5.26216 5.30536 5.34672 5.44536 5.48231 5.53445 5.59462 5.62706 5.69027 5.70310 5.79327 5.94336 6.04100 6.17403 6.22876 6.24741 6.57353 7.06659 7.15886 7.49064 7.52652 7.77274 8.02953 8.58746 9.15375 9.51505 10.03018 10.73832 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.001927 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.007755 B =14529.238802 C =15376.028985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.124 3.876 3 C -0.116 4.116 4 C -0.083 4.083 5 C 0.557 3.443 6 O -0.530 6.530 7 N -0.717 5.717 8 C 0.128 3.872 9 C -0.135 4.135 10 C 0.026 3.974 11 N -0.453 5.453 12 C 0.010 3.990 13 C 0.443 3.557 14 O -0.581 6.581 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.009 3.991 25 C -0.149 4.149 26 C 0.103 3.897 27 N -0.471 5.471 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 -7.985 -15.278 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.136 4.136 4 C -0.094 4.094 5 C 0.343 3.657 6 O -0.407 6.407 7 N -0.368 5.368 8 C 0.004 3.996 9 C -0.155 4.155 10 C -0.103 4.103 11 N -0.175 5.175 12 C -0.122 4.122 13 C 0.228 3.772 14 O -0.465 6.465 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.121 4.121 25 C -0.169 4.169 26 C -0.054 4.054 27 N -0.182 5.182 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.166 0.834 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.159 0.841 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.118 -8.938 -15.293 26.062 hybrid contribution 0.690 1.205 1.154 1.805 sum -18.428 -7.732 -14.139 24.481 Atomic orbital electron populations 1.20752 0.88181 1.03885 1.03416 1.21348 0.97430 0.87769 0.94810 1.22134 0.93256 1.00180 0.98056 1.20381 0.94560 0.93515 1.00902 1.18174 0.82271 0.88453 0.76844 1.90793 1.69902 1.30781 1.49186 1.45898 1.05750 1.10577 1.74622 1.21526 0.89625 0.85625 1.02814 1.23365 0.92174 1.00136 0.99783 1.23882 0.90659 1.01787 0.93984 1.68406 1.25056 1.15817 1.08249 1.22462 1.00346 0.95190 0.94201 1.19678 0.84994 0.88166 0.84354 1.90513 1.61894 1.13842 1.80215 1.41870 1.51613 1.09290 1.17245 1.19642 1.33468 0.93811 0.96042 0.87994 1.25266 0.97929 0.95503 0.99230 1.69601 1.46615 1.05073 1.32982 0.85916 0.79536 0.78607 0.80144 1.19874 1.20950 1.19918 1.23965 0.93663 0.95640 0.98788 1.22365 1.01680 0.92635 1.00260 1.22765 0.89115 0.98544 0.94941 1.67414 1.10345 1.29512 1.10924 0.90098 0.90147 0.90328 0.83445 0.76109 0.90775 0.90856 0.87619 0.91411 0.88747 0.89098 0.92785 0.77486 0.91792 0.89021 0.91046 0.84130 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.17 36.01 0.37 -0.24 16 2 C 0.12 1.07 6.78 -82.63 -0.56 0.51 16 3 C -0.12 -1.06 9.31 -39.02 -0.36 -1.42 16 4 C -0.08 -0.78 5.91 -104.65 -0.62 -1.40 16 5 C 0.56 6.14 7.80 -12.19 -0.10 6.04 16 6 O -0.53 -7.64 16.45 5.35 0.09 -7.55 16 7 N -0.72 -6.43 5.51 -61.16 -0.34 -6.77 16 8 C 0.13 1.23 5.53 -4.04 -0.02 1.20 16 9 C -0.14 -1.36 3.94 -89.68 -0.35 -1.71 16 10 C 0.03 0.36 6.31 -2.76 -0.02 0.35 16 11 N -0.45 -7.14 5.95 -239.74 -1.43 -8.57 16 12 C 0.01 0.17 5.31 -4.98 -0.03 0.15 16 13 C 0.44 10.40 7.59 -10.99 -0.08 10.32 16 14 O -0.58 -15.55 15.13 5.54 0.08 -15.47 16 15 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 20 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 25 C -0.15 -1.08 9.62 -39.03 -0.38 -1.46 16 26 C 0.10 0.78 11.17 -17.59 -0.20 0.58 16 27 N -0.47 -4.41 10.25 -9.53 -0.10 -4.51 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.15 1.27 7.74 -52.49 -0.41 0.87 16 32 H 0.40 2.68 6.62 -40.82 -0.27 2.41 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 37 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 44 H 0.14 0.64 6.54 -52.49 -0.34 0.30 16 45 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -34.94 382.78 -9.14 -44.08 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.25 Total: 10.10 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.61 Total: 5.01 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -1.19 Total: -57.94 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.94 -9.14 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732136089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.896 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds