Wall clock time and date at job start Tue Mar 31 2020 16:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38170 * 119.54816 * 2 1 4 4 C 1.39805 * 118.99985 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92248 * 179.72980 * 4 3 2 6 6 O 1.21516 * 120.00300 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99922 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00272 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47263 * 179.97438 * 8 7 5 10 10 C 1.53934 * 113.73604 * 271.72942 * 9 8 7 11 11 N 1.47966 * 86.17913 * 221.92133 * 10 9 8 12 12 C 1.46899 * 110.99837 * 137.58677 * 11 10 9 13 13 C 1.50695 * 109.47356 * 70.63598 * 12 11 10 14 14 O 1.21296 * 120.00030 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00336 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00446 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99652 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99881 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00535 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99707 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47220 * 60.00375 * 20 18 16 22 22 H 1.48504 * 109.46821 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47145 * 299.99903 * 20 18 16 24 24 C 1.47959 * 90.76458 * 24.69178 * 11 10 9 25 25 C 1.39836 * 118.15150 * 359.97438 * 4 3 2 26 26 C 1.38126 * 119.00546 * 359.97438 * 25 4 3 27 27 N 1.31790 * 119.55567 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46853 * 89.99890 * 1 2 3 29 29 H 1.08993 * 109.47110 * 209.99514 * 1 2 3 30 30 H 1.09001 * 109.47453 * 330.00234 * 1 2 3 31 31 H 1.07997 * 120.50400 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99902 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.47490 * 300.00142 * 8 7 5 34 34 H 1.09003 * 109.46956 * 60.00174 * 8 7 5 35 35 H 1.09001 * 112.93538 * 43.43887 * 9 8 7 36 36 H 1.08996 * 113.75730 * 336.23807 * 10 9 8 37 37 H 1.08998 * 113.75781 * 107.60827 * 10 9 8 38 38 H 1.08994 * 109.47315 * 190.63977 * 12 11 10 39 39 H 1.09001 * 109.47136 * 310.63597 * 12 11 10 40 40 H 0.97007 * 119.99836 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00528 * 179.97438 * 19 18 16 42 42 H 1.08994 * 113.75752 * 220.98973 * 24 11 10 43 43 H 1.08998 * 113.75950 * 89.62749 * 24 11 10 44 44 H 1.08001 * 120.49571 * 179.97438 * 25 4 3 45 45 H 1.07996 * 119.55337 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1886 0.0005 5 6 4.3598 2.4521 -0.0054 6 8 3.7795 3.5198 -0.0114 7 7 5.7071 2.4175 -0.0053 8 6 6.4720 3.6670 -0.0118 9 6 7.9685 3.3488 -0.0096 10 6 8.5653 3.1860 1.4000 11 7 9.7186 3.9625 0.8938 12 6 10.1631 4.9515 1.8848 13 6 10.8155 4.2431 3.0439 14 8 10.9022 3.0332 3.0441 15 7 11.3037 4.9538 4.0798 16 6 11.8968 4.3092 5.1345 17 1 11.9732 3.2320 5.1350 18 6 12.3995 5.0420 6.2026 19 7 12.3061 6.3528 6.2022 20 14 13.2083 4.1637 7.6393 21 1 14.3791 3.3912 7.1517 22 1 13.6581 5.1637 8.6409 23 1 12.2313 3.2384 8.2673 24 6 8.8665 4.5925 -0.1388 25 6 4.2343 -0.0506 0.0016 26 6 3.4741 -1.2038 0.0026 27 7 2.1571 -1.1464 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6493 2.1378 -0.0004 32 1 6.1704 1.5653 -0.0009 33 1 6.2234 4.2406 -0.9047 34 1 6.2235 4.2497 0.8753 35 1 8.2327 2.5438 -0.6954 36 1 7.9991 3.6975 2.1783 37 1 8.8089 2.1552 1.6573 38 1 10.8801 5.6308 1.4240 39 1 9.3038 5.5186 2.2428 40 1 11.2347 5.9214 4.0795 41 1 12.6567 6.8643 6.9481 42 1 9.3507 4.6855 -1.1108 43 1 8.3884 5.5154 0.1895 44 1 5.3130 -0.1051 0.0017 45 1 3.9654 -2.1656 0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732136089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:11 Heat of formation + Delta-G solvation = -27.986458 kcal Electronic energy + Delta-G solvation = -26810.732007 eV Core-core repulsion = 22828.094830 eV Total energy + Delta-G solvation = -3982.637177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79927 -41.27931 -40.17469 -39.47464 -36.15342 -35.86638 -34.22639 -33.43882 -33.32217 -32.02393 -28.89410 -28.58539 -27.07523 -26.85538 -25.35830 -23.86121 -23.60026 -21.67793 -21.01568 -20.56833 -19.90891 -18.91870 -17.94489 -17.85860 -16.96271 -16.84291 -16.67526 -16.55121 -16.47552 -16.32103 -15.93068 -15.72598 -15.36752 -15.28641 -14.96754 -14.73516 -14.31334 -14.15950 -13.72857 -13.54668 -13.47234 -13.31030 -13.12389 -13.08121 -12.85975 -12.72286 -12.45945 -12.33817 -12.14390 -11.84037 -11.68655 -11.50424 -11.40728 -11.01774 -10.56140 -10.34356 -10.23433 -10.03473 -9.99965 -9.68739 -8.48190 -5.97209 -0.38991 0.03659 1.38176 1.40093 1.51076 1.73554 1.91113 2.03128 2.27328 2.76274 2.81608 3.18072 3.23517 3.31165 3.40346 3.50238 3.66134 3.70558 3.91655 4.00646 4.15249 4.18599 4.29720 4.37023 4.41496 4.49814 4.51702 4.55875 4.61698 4.68041 4.71346 4.76840 4.84047 4.89165 4.91291 5.01748 5.13597 5.17225 5.33319 5.38144 5.43003 5.60655 5.88976 6.06839 6.33681 6.58071 6.88810 6.98800 7.10612 7.53966 8.09374 8.68929 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.001927 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.007755 B =14529.238802 C =15376.028985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.115 3.885 3 C -0.128 4.128 4 C -0.099 4.099 5 C 0.556 3.444 6 O -0.571 6.571 7 N -0.706 5.706 8 C 0.133 3.867 9 C -0.105 4.105 10 C 0.017 3.983 11 N -0.481 5.481 12 C 0.022 3.978 13 C 0.439 3.561 14 O -0.618 6.618 15 N -0.575 5.575 16 C -0.334 4.334 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.272 1.272 24 C 0.015 3.985 25 C -0.141 4.141 26 C 0.099 3.901 27 N -0.492 5.492 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.416 0.584 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.169 0.831 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.090 -8.330 -16.203 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.022 4.022 3 C -0.149 4.149 4 C -0.110 4.110 5 C 0.343 3.657 6 O -0.451 6.451 7 N -0.357 5.357 8 C 0.009 3.991 9 C -0.124 4.124 10 C -0.112 4.112 11 N -0.204 5.204 12 C -0.109 4.109 13 C 0.227 3.773 14 O -0.504 6.504 15 N -0.212 5.212 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.114 4.114 25 C -0.162 4.162 26 C -0.058 4.058 27 N -0.203 5.203 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.186 0.814 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.187 -9.282 -16.236 26.794 hybrid contribution 0.714 1.266 1.397 2.016 sum -18.473 -8.016 -14.840 25.014 Atomic orbital electron populations 1.20823 0.86543 1.04471 1.04268 1.21710 0.98667 0.87394 0.94445 1.22222 0.93516 1.00433 0.98748 1.20399 0.94711 0.93615 1.02241 1.18424 0.82692 0.88465 0.76088 1.90768 1.70720 1.32249 1.51318 1.45814 1.05237 1.11123 1.73573 1.21431 0.89184 0.85798 1.02667 1.23157 0.92028 1.00248 0.96950 1.23858 0.90818 1.00284 0.96248 1.68408 1.26798 1.16459 1.08748 1.22352 1.00969 0.95229 0.92375 1.20770 0.83570 0.87984 0.85000 1.90479 1.62970 1.15788 1.81141 1.41959 1.52249 1.09458 1.17548 1.19617 1.35635 0.93165 0.97933 0.90312 1.26052 0.97875 0.96264 1.01162 1.69664 1.46740 1.05925 1.33789 0.84990 0.78464 0.77782 0.77113 1.19679 1.19485 1.19687 1.24091 0.92851 0.96301 0.98123 1.22633 1.03051 0.91592 0.98887 1.23299 0.88754 0.99850 0.93897 1.67479 1.11399 1.29847 1.11564 0.89038 0.90045 0.89229 0.83725 0.74630 0.89771 0.92220 0.85765 0.92451 0.90914 0.87360 0.90799 0.77072 0.91292 0.86985 0.89664 0.81408 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.17 71.24 0.72 -0.40 16 2 C 0.11 1.92 6.78 42.55 0.29 2.21 16 3 C -0.13 -2.35 9.31 22.63 0.21 -2.14 16 4 C -0.10 -1.79 5.91 -19.88 -0.12 -1.91 16 5 C 0.56 11.91 7.80 86.88 0.68 12.59 16 6 O -0.57 -16.51 16.45 -3.77 -0.06 -16.57 16 7 N -0.71 -11.52 5.51 -465.70 -2.57 -14.09 16 8 C 0.13 2.30 5.53 86.38 0.48 2.78 16 9 C -0.10 -1.85 3.94 -10.15 -0.04 -1.89 16 10 C 0.02 0.47 6.31 86.40 0.55 1.01 16 11 N -0.48 -14.46 5.95 -912.40 -5.43 -19.89 16 12 C 0.02 0.76 5.31 85.56 0.45 1.21 16 13 C 0.44 20.89 7.59 87.66 0.67 21.55 16 14 O -0.62 -33.90 15.13 -3.08 -0.05 -33.95 16 15 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 16 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 19 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 20 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.01 0.29 7.54 86.41 0.65 0.94 16 25 C -0.14 -1.81 9.62 22.63 0.22 -1.59 16 26 C 0.10 1.31 11.17 84.67 0.95 2.26 16 27 N -0.49 -8.70 10.25 -184.05 -1.89 -10.59 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.14 2.61 7.74 -2.91 -0.02 2.59 16 32 H 0.42 4.58 6.62 -92.71 -0.61 3.97 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.24 7.84 -2.39 -0.02 1.23 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.69 7.53 -2.39 -0.02 1.67 16 37 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 38 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.07 2.21 7.69 -2.39 -0.02 2.19 16 40 H 0.40 19.40 7.90 -92.70 -0.73 18.66 16 41 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.45 7.75 -2.39 -0.02 1.43 16 44 H 0.17 1.07 6.54 -2.91 -0.02 1.05 16 45 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -77.32 382.78 -2.63 -79.95 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.31 Total: 32.77 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.98 Total: 18.16 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -11.22 Total: -125.36 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.11 Total: -50.52 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.32 -2.63 -79.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732136089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.960 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds