Wall clock time and date at job start Tue Mar 31 2020 16:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29811 * 126.33206 * 2 1 4 4 O 1.41325 * 109.72356 * 179.97438 * 3 2 1 5 5 C 1.34841 * 109.42657 * 0.02562 * 4 3 2 6 6 N 1.32446 * 133.10150 * 179.97438 * 5 4 3 7 7 C 1.31565 * 122.02476 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.16653 * 179.97438 * 7 6 5 9 9 C 1.38592 * 121.65564 * 0.02562 * 7 6 5 10 10 C 1.39439 * 119.20679 * 0.25282 * 9 7 6 11 11 C 1.47997 * 121.10491 * 179.72486 * 10 9 7 12 12 O 1.21529 * 120.00083 * 184.84933 * 11 10 9 13 13 N 1.34774 * 120.00140 * 4.85341 * 11 10 9 14 14 C 1.46504 * 119.99925 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46819 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46856 * 55.00347 * 15 14 13 17 17 C 1.52999 * 109.47358 * 295.00033 * 15 14 13 18 18 C 1.53006 * 109.46792 * 174.99957 * 15 14 13 19 19 N 1.46499 * 109.46873 * 185.00519 * 18 15 14 20 20 C 1.36932 * 119.99774 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00233 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00091 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00473 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99914 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47231 * 89.99553 * 24 22 20 26 26 H 1.48493 * 109.47142 * 209.99850 * 24 22 20 27 27 H 1.48500 * 109.46846 * 329.99631 * 24 22 20 28 28 C 1.40521 * 106.85394 * 0.02562 * 5 4 3 29 29 H 1.09005 * 109.47030 * 252.35949 * 1 2 3 30 30 H 1.09002 * 109.47554 * 12.35627 * 1 2 3 31 31 H 1.08998 * 109.47595 * 132.36391 * 1 2 3 32 32 H 1.09007 * 109.46911 * 270.02104 * 8 7 6 33 33 H 1.08989 * 109.47355 * 30.02170 * 8 7 6 34 34 H 1.09001 * 109.46880 * 150.02522 * 8 7 6 35 35 H 1.08010 * 120.39122 * 179.97438 * 9 7 6 36 36 H 0.97002 * 120.00127 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47159 * 299.99388 * 14 13 11 38 38 H 1.08994 * 109.46996 * 60.00068 * 14 13 11 39 39 H 1.09001 * 109.47037 * 299.99740 * 17 15 14 40 40 H 1.08998 * 109.47033 * 60.00070 * 17 15 14 41 41 H 1.08994 * 109.46848 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.46660 * 305.00242 * 18 15 14 43 43 H 1.08997 * 109.46943 * 64.99981 * 18 15 14 44 44 H 0.97004 * 119.99769 * 359.97438 * 19 18 15 45 45 H 0.96994 * 120.00362 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0004 6 7 4.7070 -1.5613 0.0003 7 6 4.5180 -2.8633 -0.0004 8 6 5.7149 -3.7792 -0.0010 9 6 3.2461 -3.4137 -0.0016 10 6 2.1383 -2.5668 -0.0074 11 6 0.7613 -3.1092 -0.0150 12 8 -0.1879 -2.3562 -0.1090 13 7 0.5600 -4.4383 0.0824 14 6 -0.8031 -4.9751 0.0754 15 6 -0.7515 -6.4995 0.1967 16 1 -0.1807 -6.7742 1.0837 17 6 -0.0785 -7.0875 -1.0452 18 6 -2.1741 -7.0501 0.3149 19 7 -2.1204 -8.4950 0.5507 20 6 -3.2802 -9.2095 0.6900 21 1 -4.2345 -8.7078 0.6265 22 6 -3.2294 -10.5787 0.9129 23 7 -4.3441 -11.2655 1.0474 24 14 -1.5789 -11.4467 1.0220 25 1 -1.1139 -11.4507 2.4324 26 1 -1.7225 -12.8452 0.5442 27 1 -0.5880 -10.7339 0.1762 28 6 2.3735 -1.1780 -0.0009 29 1 -0.3633 -0.3114 0.9794 30 1 -0.3634 1.0039 -0.2199 31 1 -0.3634 -0.6924 -0.7593 32 1 6.0035 -3.9991 -1.0289 33 1 6.5441 -3.2938 0.5133 34 1 5.4624 -4.7072 0.5120 35 1 3.1146 -4.4857 -0.0025 36 1 1.3176 -5.0394 0.1571 37 1 -1.3606 -4.5621 0.9161 38 1 -1.2965 -4.7017 -0.8572 39 1 -0.6494 -6.8128 -1.9322 40 1 0.9349 -6.6952 -1.1294 41 1 -0.0422 -8.1734 -0.9589 42 1 -2.6835 -6.5648 1.1474 43 1 -2.7180 -6.8526 -0.6088 44 1 -1.2633 -8.9457 0.6073 45 1 -4.3086 -12.2222 1.2027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732356184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:12 Heat of formation + Delta-G solvation = 60.969552 kcal Electronic energy + Delta-G solvation = -27753.876971 eV Core-core repulsion = 23775.097216 eV Total energy + Delta-G solvation = -3978.779755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55022 -40.33522 -39.27095 -37.24855 -35.16209 -34.78944 -33.33491 -32.69857 -32.21396 -30.59889 -29.04123 -28.15240 -27.00969 -26.05746 -24.72063 -23.34585 -22.16812 -21.61328 -20.68557 -19.97498 -18.57741 -18.28432 -17.91268 -17.41480 -16.93101 -16.16339 -15.83033 -15.50520 -14.91495 -14.74197 -14.62427 -14.53109 -14.13694 -13.88597 -13.79899 -13.52836 -13.40042 -13.30323 -13.03570 -12.85680 -12.61915 -12.52204 -12.45746 -12.32953 -11.84838 -11.56652 -11.48300 -11.17349 -10.87539 -10.77553 -10.73804 -10.57824 -10.21389 -10.00240 -9.88032 -9.65414 -9.46585 -9.41787 -8.98137 -7.31789 -5.83499 -3.19927 -0.37073 0.27968 1.45044 1.63918 2.30066 2.54779 3.07514 3.25940 3.28497 3.31399 3.38576 3.59241 3.77666 3.89727 4.03958 4.44246 4.51431 4.54901 4.67259 4.73284 4.91756 4.97519 5.02101 5.06376 5.12780 5.17600 5.30675 5.40667 5.42178 5.45915 5.50474 5.60159 5.65363 5.68943 5.71161 5.82721 5.96768 6.09817 6.21149 6.32946 6.53165 6.61922 6.63801 6.99694 7.07627 7.71974 7.91974 8.35068 9.13485 9.85373 10.04392 11.34827 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.002353 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.916429 B =11896.220124 C =13188.964320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.163 3.837 3 N -0.281 5.281 4 O -0.085 6.085 5 C 0.297 3.703 6 N -0.470 5.470 7 C 0.204 3.796 8 C -0.110 4.110 9 C -0.177 4.177 10 C 0.004 3.996 11 C 0.551 3.449 12 O -0.516 6.516 13 N -0.710 5.710 14 C 0.126 3.874 15 C -0.116 4.116 16 H 0.077 0.923 17 C -0.145 4.145 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.933 5.933 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.209 4.209 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.901 18.154 -3.166 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 N -0.030 5.030 4 O -0.087 6.087 5 C 0.114 3.886 6 N -0.191 5.191 7 C 0.060 3.940 8 C -0.167 4.167 9 C -0.198 4.198 10 C -0.009 4.009 11 C 0.337 3.663 12 O -0.393 6.393 13 N -0.361 5.361 14 C 0.003 3.997 15 C -0.135 4.135 16 H 0.096 0.904 17 C -0.203 4.203 18 C 0.038 3.962 19 N -0.400 5.400 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.216 4.216 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.172 0.828 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.912 20.385 -3.218 27.992 hybrid contribution 0.734 -2.130 0.172 2.260 sum 19.646 18.255 -3.046 26.991 Atomic orbital electron populations 1.20940 0.82784 1.03813 1.06607 1.24722 0.99012 0.88317 0.89665 1.80159 0.83792 1.17149 1.21883 1.89274 1.23809 1.14634 1.80966 1.20347 0.89048 0.86694 0.92545 1.66354 1.33080 1.02395 1.17293 1.21394 0.95049 0.88228 0.89310 1.20916 0.94298 0.97113 1.04381 1.22151 0.91803 1.01366 1.04462 1.19992 0.94538 0.91224 0.95158 1.18079 0.87895 0.82737 0.77599 1.90773 1.43093 1.56528 1.48944 1.46036 1.10601 1.06447 1.73012 1.21536 0.81438 0.93538 1.03235 1.21635 0.99848 0.92624 0.99422 0.90432 1.21837 0.98899 1.02007 0.97507 1.20542 0.91614 0.85358 0.98732 1.42670 1.05408 1.03067 1.88856 1.19048 0.86347 0.90497 1.41683 0.89161 1.24688 0.96405 0.96230 1.01837 1.69694 1.25148 1.07308 1.55901 0.86545 0.84688 0.79389 0.77809 1.21080 1.21701 1.20405 1.21275 0.93397 0.94401 1.12524 0.88543 0.90940 0.85635 0.88978 0.89375 0.89264 0.82765 0.76347 0.90469 0.90489 0.92226 0.93748 0.91582 0.95157 0.95090 0.80630 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 8.48 36.00 0.31 -0.47 16 2 C 0.16 1.85 7.44 -80.24 -0.60 1.25 16 3 N -0.28 -3.58 12.81 34.84 0.45 -3.13 16 4 O -0.08 -1.14 12.06 7.64 0.09 -1.05 16 5 C 0.30 3.61 8.64 -16.43 -0.14 3.47 16 6 N -0.47 -5.03 10.25 -9.24 -0.09 -5.13 16 7 C 0.20 1.52 6.78 -82.57 -0.56 0.96 16 8 C -0.11 -0.42 10.14 36.01 0.37 -0.05 16 9 C -0.18 -1.18 9.22 -39.00 -0.36 -1.54 16 10 C 0.00 0.03 5.93 -104.46 -0.62 -0.58 16 11 C 0.55 5.36 7.79 -12.26 -0.10 5.26 16 12 O -0.52 -5.98 11.35 5.34 0.06 -5.92 16 13 N -0.71 -5.84 5.24 -61.20 -0.32 -6.17 16 14 C 0.13 1.27 5.07 -4.04 -0.02 1.25 16 15 C -0.12 -1.39 2.46 -90.61 -0.22 -1.61 16 16 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.15 -1.64 8.94 37.16 0.33 -1.31 16 18 C 0.17 2.81 5.65 -4.04 -0.02 2.79 16 19 N -0.75 -16.56 5.13 -59.91 -0.31 -16.87 16 20 C -0.25 -6.69 10.47 -15.06 -0.16 -6.85 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 24 Si 0.89 21.09 27.74 -169.99 -4.71 16.38 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 28 C -0.21 -2.35 6.16 -104.83 -0.65 -2.99 16 29 H 0.10 0.86 7.78 -51.93 -0.40 0.46 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.24 5.63 -52.00 -0.29 0.95 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.15 8.07 -51.93 -0.42 -0.27 16 35 H 0.15 0.50 6.57 -52.48 -0.34 0.15 16 36 H 0.40 2.36 5.83 -40.82 -0.24 2.12 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 41 H 0.07 0.90 7.18 -51.93 -0.37 0.53 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.36 7.62 4.71 -40.82 -0.19 7.43 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -33.71 370.54 -7.05 -40.76 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.03 Total: 3.81 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.53 Total: -0.41 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.50 Total: -59.16 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.15 Total: -6.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.71 -7.05 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732356184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.728 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds