Wall clock time and date at job start Tue Mar 31 2020 16:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29811 * 126.33206 * 2 1 4 4 O 1.41325 * 109.72356 * 179.97438 * 3 2 1 5 5 C 1.34841 * 109.42657 * 0.02562 * 4 3 2 6 6 N 1.32446 * 133.10150 * 179.97438 * 5 4 3 7 7 C 1.31565 * 122.02476 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.16653 * 179.97438 * 7 6 5 9 9 C 1.38592 * 121.65564 * 0.02562 * 7 6 5 10 10 C 1.39439 * 119.20679 * 0.25282 * 9 7 6 11 11 C 1.47997 * 121.10491 * 179.72486 * 10 9 7 12 12 O 1.21529 * 120.00083 * 184.84933 * 11 10 9 13 13 N 1.34774 * 120.00140 * 4.85341 * 11 10 9 14 14 C 1.46504 * 119.99925 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46819 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46856 * 55.00347 * 15 14 13 17 17 C 1.52999 * 109.47358 * 295.00033 * 15 14 13 18 18 C 1.53006 * 109.46792 * 174.99957 * 15 14 13 19 19 N 1.46499 * 109.46873 * 185.00519 * 18 15 14 20 20 C 1.36932 * 119.99774 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00233 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00091 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00473 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99914 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47231 * 89.99553 * 24 22 20 26 26 H 1.48493 * 109.47142 * 209.99850 * 24 22 20 27 27 H 1.48500 * 109.46846 * 329.99631 * 24 22 20 28 28 C 1.40521 * 106.85394 * 0.02562 * 5 4 3 29 29 H 1.09005 * 109.47030 * 252.35949 * 1 2 3 30 30 H 1.09002 * 109.47554 * 12.35627 * 1 2 3 31 31 H 1.08998 * 109.47595 * 132.36391 * 1 2 3 32 32 H 1.09007 * 109.46911 * 270.02104 * 8 7 6 33 33 H 1.08989 * 109.47355 * 30.02170 * 8 7 6 34 34 H 1.09001 * 109.46880 * 150.02522 * 8 7 6 35 35 H 1.08010 * 120.39122 * 179.97438 * 9 7 6 36 36 H 0.97002 * 120.00127 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47159 * 299.99388 * 14 13 11 38 38 H 1.08994 * 109.46996 * 60.00068 * 14 13 11 39 39 H 1.09001 * 109.47037 * 299.99740 * 17 15 14 40 40 H 1.08998 * 109.47033 * 60.00070 * 17 15 14 41 41 H 1.08994 * 109.46848 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.46660 * 305.00242 * 18 15 14 43 43 H 1.08997 * 109.46943 * 64.99981 * 18 15 14 44 44 H 0.97004 * 119.99769 * 359.97438 * 19 18 15 45 45 H 0.96994 * 120.00362 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0004 6 7 4.7070 -1.5613 0.0003 7 6 4.5180 -2.8633 -0.0004 8 6 5.7149 -3.7792 -0.0010 9 6 3.2461 -3.4137 -0.0016 10 6 2.1383 -2.5668 -0.0074 11 6 0.7613 -3.1092 -0.0150 12 8 -0.1879 -2.3562 -0.1090 13 7 0.5600 -4.4383 0.0824 14 6 -0.8031 -4.9751 0.0754 15 6 -0.7515 -6.4995 0.1967 16 1 -0.1807 -6.7742 1.0837 17 6 -0.0785 -7.0875 -1.0452 18 6 -2.1741 -7.0501 0.3149 19 7 -2.1204 -8.4950 0.5507 20 6 -3.2802 -9.2095 0.6900 21 1 -4.2345 -8.7078 0.6265 22 6 -3.2294 -10.5787 0.9129 23 7 -4.3441 -11.2655 1.0474 24 14 -1.5789 -11.4467 1.0220 25 1 -1.1139 -11.4507 2.4324 26 1 -1.7225 -12.8452 0.5442 27 1 -0.5880 -10.7339 0.1762 28 6 2.3735 -1.1780 -0.0009 29 1 -0.3633 -0.3114 0.9794 30 1 -0.3634 1.0039 -0.2199 31 1 -0.3634 -0.6924 -0.7593 32 1 6.0035 -3.9991 -1.0289 33 1 6.5441 -3.2938 0.5133 34 1 5.4624 -4.7072 0.5120 35 1 3.1146 -4.4857 -0.0025 36 1 1.3176 -5.0394 0.1571 37 1 -1.3606 -4.5621 0.9161 38 1 -1.2965 -4.7017 -0.8572 39 1 -0.6494 -6.8128 -1.9322 40 1 0.9349 -6.6952 -1.1294 41 1 -0.0422 -8.1734 -0.9589 42 1 -2.6835 -6.5648 1.1474 43 1 -2.7180 -6.8526 -0.6088 44 1 -1.2633 -8.9457 0.6073 45 1 -4.3086 -12.2222 1.2027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732356184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:11 Heat of formation + Delta-G solvation = 35.234592 kcal Electronic energy + Delta-G solvation = -27754.992922 eV Core-core repulsion = 23775.097216 eV Total energy + Delta-G solvation = -3979.895707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.31766 -41.10324 -39.98070 -38.36035 -36.24698 -35.81124 -34.50235 -33.56575 -33.14304 -32.19959 -29.81656 -28.74196 -27.86724 -27.39989 -25.61508 -24.29281 -23.56278 -22.44899 -21.63489 -20.96419 -19.66525 -19.28625 -18.93544 -18.41070 -17.74825 -17.08545 -16.63851 -16.54931 -16.12726 -15.76793 -15.55120 -15.42367 -15.16012 -14.98655 -14.73162 -14.50267 -14.35996 -14.10848 -14.00874 -13.79595 -13.60935 -13.44410 -13.17115 -13.04777 -12.98183 -12.84283 -12.62928 -12.25402 -12.14994 -12.07300 -11.95581 -11.71365 -11.63218 -11.34903 -10.94955 -10.77617 -10.63083 -10.17280 -10.11663 -9.26466 -7.99822 -5.33793 -1.07277 -0.40079 0.64895 0.85579 1.39744 1.45697 1.53080 1.58716 1.78780 2.39119 2.51968 2.52391 2.86008 3.15454 3.22378 3.31738 3.43024 3.58204 3.80058 3.97526 3.99784 4.03572 4.15491 4.19650 4.35718 4.47958 4.57268 4.61999 4.69484 4.74931 4.80625 4.82772 4.87840 4.91165 4.98629 5.07612 5.08878 5.16592 5.34030 5.36575 5.44023 5.52884 5.78914 5.82552 6.23716 6.35124 6.41398 7.03606 7.11620 7.86896 8.06995 9.21834 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.002353 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.916429 B =11896.220124 C =13188.964320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.163 3.837 3 N -0.306 5.306 4 O -0.110 6.110 5 C 0.274 3.726 6 N -0.493 5.493 7 C 0.205 3.795 8 C -0.109 4.109 9 C -0.154 4.154 10 C -0.004 4.004 11 C 0.553 3.447 12 O -0.538 6.538 13 N -0.694 5.694 14 C 0.136 3.864 15 C -0.100 4.100 16 H 0.091 0.909 17 C -0.145 4.145 18 C 0.158 3.842 19 N -0.754 5.754 20 C -0.236 4.236 21 H 0.052 0.948 22 C -0.070 4.070 23 N -0.987 5.987 24 Si 0.959 3.041 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.241 1.241 28 C -0.228 4.228 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.200 0.800 36 H 0.416 0.584 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.369 0.631 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.033 16.934 -3.374 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 N -0.057 5.057 4 O -0.112 6.112 5 C 0.092 3.908 6 N -0.215 5.215 7 C 0.062 3.938 8 C -0.166 4.166 9 C -0.175 4.175 10 C -0.017 4.017 11 C 0.339 3.661 12 O -0.417 6.417 13 N -0.347 5.347 14 C 0.013 3.987 15 C -0.119 4.119 16 H 0.110 0.890 17 C -0.202 4.202 18 C 0.031 3.969 19 N -0.400 5.400 20 C -0.367 4.367 21 H 0.070 0.930 22 C -0.261 4.261 23 N -0.638 5.638 24 Si 0.786 3.214 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.165 1.165 28 C -0.235 4.235 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.216 0.784 36 H 0.255 0.745 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.203 0.797 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 22.099 19.206 -3.437 29.480 hybrid contribution -0.286 -1.756 0.226 1.793 sum 21.814 17.450 -3.211 28.118 Atomic orbital electron populations 1.20933 0.81524 1.04404 1.06495 1.25076 0.99702 0.88414 0.88524 1.80106 0.83758 1.18078 1.23721 1.89189 1.24374 1.15979 1.81642 1.20569 0.90017 0.86361 0.93871 1.66440 1.33149 1.03724 1.18203 1.22191 0.96918 0.87452 0.87239 1.21127 0.92521 0.97257 1.05712 1.22646 0.90410 1.03113 1.01283 1.20013 0.95051 0.90597 0.95996 1.18117 0.87801 0.82897 0.77240 1.90774 1.43814 1.57217 1.49925 1.45763 1.10317 1.06112 1.72479 1.21265 0.82392 0.92147 1.02938 1.21422 0.96354 0.93440 1.00670 0.89027 1.21844 1.01073 1.00730 0.96556 1.20725 0.95419 0.82806 0.97958 1.42623 1.03943 1.04857 1.88604 1.19025 0.86903 0.90852 1.39881 0.92977 1.25611 1.00807 0.97216 1.02441 1.69902 1.28231 1.07449 1.58204 0.85352 0.80114 0.77421 0.78535 1.20348 1.22731 1.16532 1.21381 0.92891 0.95369 1.13836 0.88313 0.89799 0.86031 0.87387 0.89787 0.86110 0.78353 0.74538 0.91070 0.90821 0.92854 0.89706 0.93582 0.95720 0.95772 0.79711 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 8.48 71.24 0.60 -0.79 16 2 C 0.16 3.74 7.44 44.94 0.33 4.08 16 3 N -0.31 -8.17 12.81 -43.68 -0.56 -8.73 16 4 O -0.11 -3.14 12.06 29.73 0.36 -2.78 16 5 C 0.27 6.72 8.64 85.16 0.74 7.45 16 6 N -0.49 -10.04 10.25 -296.37 -3.04 -13.07 16 7 C 0.21 2.39 6.78 42.68 0.29 2.68 16 8 C -0.11 -0.35 10.14 71.24 0.72 0.38 16 9 C -0.15 -1.38 9.22 22.64 0.21 -1.17 16 10 C 0.00 -0.06 5.93 -19.76 -0.12 -0.18 16 11 C 0.55 9.21 7.79 86.83 0.68 9.89 16 12 O -0.54 -11.65 11.35 -3.81 -0.04 -11.69 16 13 N -0.69 -8.49 5.24 -465.82 -2.44 -10.93 16 14 C 0.14 2.33 5.07 86.38 0.44 2.76 16 15 C -0.10 -2.02 2.46 -10.79 -0.03 -2.05 16 16 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 17 C -0.14 -2.64 8.94 71.98 0.64 -2.00 16 18 C 0.16 5.11 5.65 86.38 0.49 5.60 16 19 N -0.75 -31.90 5.13 -343.45 -1.76 -33.66 16 20 C -0.24 -12.91 10.47 84.03 0.88 -12.03 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.99 -62.16 13.97 21.65 0.30 -61.85 16 24 Si 0.96 42.62 27.74 68.60 1.90 44.52 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.24 -9.16 6.52 99.48 0.65 -8.51 16 28 C -0.23 -5.01 6.16 -20.00 -0.12 -5.13 16 29 H 0.10 1.75 7.78 -2.38 -0.02 1.73 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.12 2.37 5.63 -3.44 -0.02 2.35 16 32 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.12 -0.33 8.07 -2.39 -0.02 -0.35 16 35 H 0.20 -0.11 6.57 -2.91 -0.02 -0.13 16 36 H 0.42 2.40 5.83 -92.71 -0.54 1.86 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.87 7.18 -2.39 -0.02 0.85 16 41 H 0.05 1.05 7.18 -2.39 -0.02 1.04 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.37 14.38 4.71 -92.70 -0.44 13.94 16 45 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -78.20 370.54 0.94 -77.26 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.01 Total: 14.97 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.22 Total: 5.97 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -7.50 Total: -128.25 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.32 Total: -14.47 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.90 Total: 44.52 kcal Total: -78.20 0.94 -77.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732356184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.492 kcal (2) G-P(sol) polarization free energy of solvation -78.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds