Wall clock time and date at job start Tue Mar 31 2020 16:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29816 * 126.33383 * 2 1 4 4 O 1.41320 * 109.72316 * 179.97438 * 3 2 1 5 5 C 1.34836 * 109.42586 * 0.02562 * 4 3 2 6 6 N 1.32450 * 133.10022 * 180.02562 * 5 4 3 7 7 C 1.31563 * 122.03031 * 180.02562 * 6 5 4 8 8 C 1.50692 * 119.17308 * 180.02562 * 7 6 5 9 9 C 1.38590 * 121.65119 * 359.67595 * 7 6 5 10 10 C 1.39444 * 119.20314 * 0.61330 * 9 7 6 11 11 C 1.48004 * 121.10381 * 179.69572 * 10 9 7 12 12 O 1.21533 * 120.00280 * 172.65509 * 11 10 9 13 13 N 1.34776 * 120.00125 * 352.65240 * 11 10 9 14 14 C 1.46503 * 120.00387 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47453 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.47325 * 304.99825 * 15 14 13 17 17 C 1.53004 * 109.47124 * 65.00007 * 15 14 13 18 18 C 1.53001 * 109.47402 * 184.99896 * 15 14 13 19 19 N 1.46493 * 109.47406 * 174.99994 * 18 15 14 20 20 C 1.36933 * 120.00210 * 179.72408 * 19 18 15 21 21 H 1.08007 * 120.00064 * 0.28024 * 20 19 18 22 22 C 1.38817 * 120.00356 * 180.27691 * 20 19 18 23 23 N 1.31621 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47267 * 89.99942 * 24 22 20 26 26 H 1.48502 * 109.46736 * 209.99780 * 24 22 20 27 27 H 1.48496 * 109.47260 * 329.99637 * 24 22 20 28 28 C 1.40522 * 106.85895 * 0.02562 * 5 4 3 29 29 H 1.08992 * 109.46973 * 260.29620 * 1 2 3 30 30 H 1.08998 * 109.46810 * 20.29393 * 1 2 3 31 31 H 1.09004 * 109.47183 * 140.28976 * 1 2 3 32 32 H 1.09003 * 109.47503 * 89.99771 * 8 7 6 33 33 H 1.09004 * 109.47360 * 209.99943 * 8 7 6 34 34 H 1.09008 * 109.47366 * 329.99868 * 8 7 6 35 35 H 1.07999 * 120.40081 * 180.31972 * 9 7 6 36 36 H 0.97006 * 120.00181 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.47193 * 59.99716 * 14 13 11 38 38 H 1.09006 * 109.46680 * 300.00246 * 14 13 11 39 39 H 1.09003 * 109.47274 * 60.00266 * 17 15 14 40 40 H 1.09000 * 109.47048 * 180.02562 * 17 15 14 41 41 H 1.09007 * 109.47246 * 299.99864 * 17 15 14 42 42 H 1.09004 * 109.46965 * 54.99626 * 18 15 14 43 43 H 1.09000 * 109.47151 * 295.00163 * 18 15 14 44 44 H 0.97002 * 120.00407 * 359.97438 * 19 18 15 45 45 H 0.96995 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0004 6 7 4.7070 -1.5614 0.0012 7 6 4.5181 -2.8634 0.0003 8 6 5.7148 -3.7792 0.0018 9 6 3.2462 -3.4137 0.0051 10 6 2.1384 -2.5668 -0.0019 11 6 0.7613 -3.1092 -0.0039 12 8 -0.1870 -2.3601 0.1245 13 7 0.5590 -4.4338 -0.1482 14 6 -0.8041 -4.9707 -0.1507 15 6 -0.7538 -6.4895 -0.3277 16 1 -0.1896 -6.7318 -1.2284 17 6 -0.0718 -7.1223 0.8870 18 6 -2.1773 -7.0356 -0.4553 19 7 -2.1257 -8.4709 -0.7438 20 6 -3.2867 -9.1810 -0.8954 21 1 -4.2405 -8.6820 -0.8067 22 6 -3.2379 -10.5423 -1.1630 23 7 -2.0757 -11.1504 -1.2717 24 14 -4.8217 -11.5107 -1.3705 25 1 -5.2270 -11.4967 -2.7991 26 1 -4.6058 -12.9126 -0.9309 27 1 -5.8913 -10.8927 -0.5464 28 6 2.3735 -1.1781 -0.0009 29 1 -0.3633 -0.1732 1.0129 30 1 -0.3633 0.9639 -0.3564 31 1 -0.3634 -0.7906 -0.6566 32 1 6.0017 -4.0005 1.0299 33 1 5.4633 -4.7066 -0.5128 34 1 6.5452 -3.2930 -0.5104 35 1 3.1145 -4.4856 0.0094 36 1 1.3159 -5.0319 -0.2503 37 1 -1.3677 -4.5273 -0.9715 38 1 -1.2905 -4.7314 0.7950 39 1 -0.6360 -6.8800 1.7876 40 1 -0.0355 -8.2043 0.7606 41 1 0.9424 -6.7333 0.9779 42 1 -2.6928 -6.5203 -1.2658 43 1 -2.7144 -6.8719 0.4789 44 1 -1.2692 -8.9191 -0.8239 45 1 -2.0415 -12.1016 -1.4583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732356185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:14 Heat of formation + Delta-G solvation = 33.273528 kcal Electronic energy + Delta-G solvation = -27668.032185 eV Core-core repulsion = 23688.051440 eV Total energy + Delta-G solvation = -3979.980745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.31654 -41.10404 -39.97928 -38.26790 -36.17799 -35.79266 -34.48558 -33.50221 -33.09633 -31.77061 -29.80990 -28.73410 -27.79947 -27.23645 -25.66865 -24.48197 -23.68360 -22.44265 -21.55199 -20.84508 -19.38165 -19.21521 -18.84651 -18.38552 -17.75171 -17.08797 -16.75391 -16.46599 -16.09303 -15.66694 -15.50542 -15.39123 -15.15513 -15.07900 -14.59821 -14.49931 -14.38825 -14.07517 -14.02206 -13.57111 -13.51853 -13.45396 -13.04704 -12.98423 -12.92334 -12.79551 -12.59394 -12.25508 -12.14888 -12.14216 -11.95023 -11.65219 -11.61154 -11.36519 -10.91244 -10.75460 -10.64308 -10.14161 -10.11380 -8.95472 -7.93450 -5.20565 -1.06887 -0.39905 0.64538 0.85693 1.50047 1.50441 1.57874 1.58827 1.79814 2.38928 2.52387 2.58554 2.86192 3.16166 3.22777 3.40911 3.43349 3.74788 3.80639 3.99444 4.02401 4.10628 4.17651 4.36180 4.38757 4.48955 4.59934 4.62946 4.69756 4.77028 4.80933 4.82953 4.88155 4.92144 4.99967 5.08801 5.11918 5.20003 5.34486 5.40579 5.46270 5.53249 5.55528 5.82715 6.29844 6.35240 6.41394 7.01927 7.37231 8.13730 8.36670 9.29930 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.002170 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.847362 B =12898.570875 C =14074.865484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.163 3.837 3 N -0.306 5.306 4 O -0.110 6.110 5 C 0.274 3.726 6 N -0.492 5.492 7 C 0.206 3.794 8 C -0.110 4.110 9 C -0.156 4.156 10 C -0.003 4.003 11 C 0.552 3.448 12 O -0.536 6.536 13 N -0.695 5.695 14 C 0.138 3.862 15 C -0.096 4.096 16 H 0.082 0.918 17 C -0.138 4.138 18 C 0.155 3.845 19 N -0.741 5.741 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.968 3.032 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.271 1.271 28 C -0.228 4.228 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.197 0.803 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.247 16.677 3.739 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 N -0.056 5.056 4 O -0.111 6.111 5 C 0.092 3.908 6 N -0.215 5.215 7 C 0.063 3.937 8 C -0.166 4.166 9 C -0.176 4.176 10 C -0.016 4.016 11 C 0.338 3.662 12 O -0.415 6.415 13 N -0.347 5.347 14 C 0.014 3.986 15 C -0.115 4.115 16 H 0.100 0.900 17 C -0.196 4.196 18 C 0.028 3.972 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.798 3.202 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.196 1.196 28 C -0.235 4.235 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.214 0.786 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.345 18.938 3.833 24.065 hybrid contribution -1.022 -1.842 -0.243 2.120 sum 13.323 17.096 3.590 21.970 Atomic orbital electron populations 1.20991 0.81499 1.04874 1.06208 1.25081 0.99717 0.88368 0.88504 1.80099 0.83744 1.18051 1.23755 1.89186 1.24383 1.15917 1.81646 1.20563 0.89992 0.86369 0.93839 1.66441 1.33136 1.03673 1.18229 1.22169 0.96856 0.87473 0.87227 1.21125 0.92550 0.97244 1.05716 1.22639 0.90507 1.03080 1.01367 1.20004 0.95006 0.90641 0.95952 1.18105 0.87778 0.82789 0.77487 1.90758 1.43862 1.57116 1.49812 1.45791 1.10404 1.06588 1.71916 1.21269 0.82350 0.92122 1.02823 1.21354 0.96636 0.93289 1.00230 0.89991 1.21765 1.00717 1.00400 0.96705 1.20743 0.95061 0.84065 0.97294 1.42506 1.05363 1.04723 1.85893 1.19608 0.87686 0.91215 1.39023 0.90898 1.25487 0.99576 0.97867 1.03668 1.69782 1.24542 1.09738 1.57717 0.85212 0.79618 0.77730 0.77641 1.21559 1.22245 1.19647 1.21377 0.92944 0.95319 1.13824 0.88088 0.89644 0.86198 0.87380 0.86235 0.89685 0.78565 0.74627 0.91049 0.90743 0.92982 0.94057 0.90066 0.96131 0.96068 0.79019 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 8.54 71.24 0.61 -0.87 16 2 C 0.16 3.87 7.44 44.94 0.33 4.20 16 3 N -0.31 -8.34 12.81 -43.67 -0.56 -8.90 16 4 O -0.11 -3.20 12.06 29.79 0.36 -2.84 16 5 C 0.27 6.98 8.64 85.16 0.74 7.72 16 6 N -0.49 -10.58 10.25 -296.39 -3.04 -13.61 16 7 C 0.21 2.70 6.78 42.68 0.29 2.99 16 8 C -0.11 -0.52 10.14 71.23 0.72 0.20 16 9 C -0.16 -1.68 9.21 22.64 0.21 -1.47 16 10 C 0.00 -0.06 5.93 -19.76 -0.12 -0.18 16 11 C 0.55 10.05 7.78 86.83 0.68 10.72 16 12 O -0.54 -12.19 11.39 -3.82 -0.04 -12.23 16 13 N -0.69 -10.07 5.24 -465.83 -2.44 -12.52 16 14 C 0.14 2.65 5.06 86.38 0.44 3.09 16 15 C -0.10 -2.29 2.46 -10.80 -0.03 -2.32 16 16 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.14 -3.13 8.94 71.98 0.64 -2.49 16 18 C 0.16 5.42 5.65 86.38 0.49 5.91 16 19 N -0.74 -34.67 5.33 -343.45 -1.83 -36.50 16 20 C -0.24 -12.99 9.99 84.04 0.84 -12.15 16 21 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 23 N -0.97 -56.64 13.06 21.65 0.28 -56.35 16 24 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.23 -5.24 6.15 -20.00 -0.12 -5.36 16 29 H 0.10 1.83 7.89 -2.39 -0.02 1.81 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 2.42 5.44 -10.45 -0.06 2.36 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.12 -0.09 8.07 -2.38 -0.02 -0.11 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.20 0.37 6.60 -2.91 -0.02 0.36 16 36 H 0.42 3.63 5.86 -92.70 -0.54 3.08 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.21 7.18 -2.39 -0.02 1.19 16 41 H 0.08 1.17 7.18 -2.38 -0.02 1.16 16 42 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.38 18.48 6.85 -92.71 -0.64 17.84 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -72.75 373.72 0.76 -71.99 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -0.17 Total: 17.86 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 6.18 Total: 6.40 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -7.59 Total: -127.88 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.32 Total: -15.07 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.75 0.76 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732356185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.264 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds