Wall clock time and date at job start Tue Mar 31 2020 16:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29812 * 126.33243 * 2 1 4 4 O 1.41332 * 109.72525 * 179.97438 * 3 2 1 5 5 C 1.34829 * 109.42319 * 359.97438 * 4 3 2 6 6 N 1.32451 * 133.09856 * 179.97438 * 5 4 3 7 7 C 1.31562 * 122.02738 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.17462 * 179.97438 * 7 6 5 9 9 C 1.38598 * 121.65782 * 359.70035 * 7 6 5 10 10 C 1.39445 * 119.19856 * 0.57480 * 9 7 6 11 11 C 1.48002 * 121.10331 * 179.74096 * 10 9 7 12 12 O 1.21529 * 119.99996 * 144.49327 * 11 10 9 13 13 N 1.34776 * 119.99989 * 324.49056 * 11 10 9 14 14 C 1.46502 * 119.99830 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47076 * 324.99638 * 14 13 11 16 16 C 1.53004 * 109.47335 * 85.00154 * 14 13 11 17 17 C 1.52998 * 109.46755 * 204.99586 * 14 13 11 18 18 H 1.09006 * 109.47048 * 65.00472 * 17 14 13 19 19 C 1.53001 * 109.47511 * 305.00167 * 17 14 13 20 20 N 1.46498 * 109.47127 * 184.99885 * 17 14 13 21 21 C 1.36939 * 120.00401 * 205.00233 * 20 17 14 22 22 H 1.07996 * 119.99773 * 0.02562 * 21 20 17 23 23 C 1.38807 * 120.00277 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99912 * 0.27411 * 23 21 20 25 25 Si 1.86798 * 120.00048 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47585 * 59.99783 * 25 23 21 27 27 H 1.48499 * 109.47136 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46859 * 299.99574 * 25 23 21 29 29 C 1.40526 * 106.86131 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46873 * 264.26392 * 1 2 3 31 31 H 1.09003 * 109.47030 * 24.26446 * 1 2 3 32 32 H 1.08998 * 109.46565 * 144.26315 * 1 2 3 33 33 H 1.09007 * 109.46625 * 89.99605 * 8 7 6 34 34 H 1.08996 * 109.47531 * 209.99903 * 8 7 6 35 35 H 1.09000 * 109.46876 * 330.00799 * 8 7 6 36 36 H 1.07995 * 120.40249 * 180.30454 * 9 7 6 37 37 H 0.97000 * 119.99966 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46544 * 299.99930 * 16 14 13 39 39 H 1.09002 * 109.47141 * 59.99534 * 16 14 13 40 40 H 1.08993 * 109.46944 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47278 * 59.99907 * 19 17 14 42 42 H 1.09002 * 109.46700 * 180.02562 * 19 17 14 43 43 H 1.08996 * 109.46904 * 299.99754 * 19 17 14 44 44 H 0.97001 * 120.00135 * 25.00488 * 20 17 14 45 45 H 0.96992 * 120.00035 * 359.72339 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6305 0.6418 0.0006 5 6 3.6967 -0.7048 0.0015 6 7 4.7071 -1.5612 0.0019 7 6 4.5182 -2.8632 0.0034 8 6 5.7149 -3.7791 0.0032 9 6 3.2463 -3.4137 0.0108 10 6 2.1385 -2.5668 0.0046 11 6 0.7614 -3.1092 0.0064 12 8 -0.1186 -2.5312 0.6133 13 7 0.4834 -4.2442 -0.6651 14 6 -0.8798 -4.7808 -0.6638 15 1 -1.3448 -4.5891 0.3031 16 6 -1.6961 -4.1024 -1.7659 17 6 -0.8345 -6.2889 -0.9179 18 1 -0.3296 -6.7822 -0.0873 19 6 -0.0714 -6.5649 -2.2150 20 7 -2.2002 -6.8056 -1.0354 21 6 -2.4615 -8.1203 -0.7551 22 1 -1.6607 -8.7761 -0.4470 23 6 -3.7555 -8.6100 -0.8669 24 7 -4.7305 -7.8120 -1.2476 25 14 -4.1119 -10.4032 -0.4838 26 1 -3.7395 -10.6921 0.9243 27 1 -5.5591 -10.6729 -0.6789 28 1 -3.3203 -11.2703 -1.3931 29 6 2.3735 -1.1780 0.0022 30 1 -0.3633 -0.1027 1.0225 31 1 -0.3633 0.9369 -0.4223 32 1 -0.3632 -0.8342 -0.6002 33 1 6.0044 -3.9988 1.0309 34 1 5.4621 -4.7072 -0.5094 35 1 6.5439 -3.2936 -0.5118 36 1 3.1147 -4.4856 0.0168 37 1 1.1857 -4.7054 -1.1499 38 1 -1.7283 -3.0279 -1.5849 39 1 -1.2310 -4.2941 -2.7329 40 1 -2.7104 -4.5013 -1.7645 41 1 0.9448 -6.1805 -2.1276 42 1 -0.0395 -7.6393 -2.3961 43 1 -0.5763 -6.0716 -3.0455 44 1 -2.9196 -6.2165 -1.3118 45 1 -4.5455 -6.8808 -1.4462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733983754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:37 Heat of formation + Delta-G solvation = 57.148799 kcal Electronic energy + Delta-G solvation = -28558.337846 eV Core-core repulsion = 24579.392410 eV Total energy + Delta-G solvation = -3978.945436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45685 -40.26097 -39.20618 -37.29108 -35.07107 -34.41190 -33.12247 -32.53867 -31.75591 -29.46377 -29.03398 -28.21013 -27.98511 -25.38880 -24.34725 -23.60804 -22.93473 -21.55448 -20.27395 -19.60530 -18.50727 -17.98371 -17.71385 -17.53791 -16.82185 -15.84862 -15.73617 -15.07853 -14.77278 -14.57054 -14.50892 -14.40326 -14.07033 -13.73810 -13.67967 -13.59730 -13.24053 -13.14199 -13.06102 -12.73279 -12.64624 -12.45601 -12.14658 -11.92623 -11.71505 -11.65275 -11.35980 -10.99024 -10.76630 -10.56837 -10.54956 -10.37532 -10.05488 -9.93773 -9.84834 -9.36265 -9.33511 -9.12105 -9.04127 -7.18743 -6.20077 -3.22104 -0.22106 0.41586 1.52492 1.71145 2.38758 2.74365 3.10498 3.33320 3.46063 3.48906 3.65975 3.66674 3.95902 3.99120 4.21399 4.52936 4.59013 4.68193 4.80999 5.06407 5.08174 5.11091 5.20748 5.24681 5.28916 5.31742 5.33866 5.36650 5.49012 5.51771 5.55051 5.73186 5.81015 5.88524 5.93112 6.03310 6.13206 6.15713 6.35311 6.46903 6.59733 6.69405 6.85112 7.17073 7.25189 7.69632 7.88406 8.65018 9.09547 9.95806 10.08815 11.27737 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.002719 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.012209 B =10297.170104 C =11412.848384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.161 3.839 3 N -0.279 5.279 4 O -0.084 6.084 5 C 0.298 3.702 6 N -0.473 5.473 7 C 0.204 3.796 8 C -0.109 4.109 9 C -0.178 4.178 10 C 0.009 3.991 11 C 0.550 3.450 12 O -0.515 6.515 13 N -0.703 5.703 14 C 0.133 3.867 15 H 0.093 0.907 16 C -0.160 4.160 17 C 0.174 3.826 18 H 0.054 0.946 19 C -0.169 4.169 20 N -0.730 5.730 21 C -0.335 4.335 22 H 0.065 0.935 23 C -0.041 4.041 24 N -0.940 5.940 25 Si 1.080 2.920 26 H -0.295 1.295 27 H -0.284 1.284 28 H -0.295 1.295 29 C -0.214 4.214 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.401 0.599 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.133 10.235 0.435 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 N -0.028 5.028 4 O -0.086 6.086 5 C 0.114 3.886 6 N -0.194 5.194 7 C 0.061 3.939 8 C -0.166 4.166 9 C -0.199 4.199 10 C -0.004 4.004 11 C 0.334 3.666 12 O -0.391 6.391 13 N -0.356 5.356 14 C 0.029 3.971 15 H 0.111 0.889 16 C -0.218 4.218 17 C 0.063 3.937 18 H 0.072 0.928 19 C -0.230 4.230 20 N -0.374 5.374 21 C -0.466 4.466 22 H 0.083 0.917 23 C -0.239 4.239 24 N -0.585 5.585 25 Si 0.910 3.090 26 H -0.222 1.222 27 H -0.210 1.210 28 H -0.222 1.222 29 C -0.221 4.221 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.175 0.825 37 H 0.238 0.762 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.205 0.795 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.383 11.080 1.011 20.639 hybrid contribution 0.660 0.072 -0.393 0.772 sum 18.043 11.152 0.618 21.220 Atomic orbital electron populations 1.20662 0.83155 1.04295 1.05841 1.24627 0.98759 0.88609 0.89970 1.80130 0.83897 1.17083 1.21660 1.89261 1.23610 1.14738 1.81016 1.20313 0.89053 0.86588 0.92596 1.66350 1.32995 1.02394 1.17650 1.21391 0.95048 0.88206 0.89251 1.20904 0.94247 0.97120 1.04339 1.22176 0.91527 1.01637 1.04584 1.20029 0.94870 0.91218 0.94264 1.18013 0.86780 0.81483 0.80277 1.90815 1.46876 1.58487 1.42900 1.46208 1.13031 1.24834 1.51484 1.21483 0.80188 0.94688 1.00710 0.88919 1.22153 1.01052 1.00122 0.98494 1.20290 0.88473 0.89211 0.95721 0.92768 1.22543 0.97565 1.02434 1.00419 1.42441 1.02860 1.09573 1.82575 1.20004 0.96104 0.86601 1.43880 0.91654 1.25783 0.91383 1.06587 1.00189 1.70898 1.33026 1.06238 1.48340 0.83246 0.76093 0.73939 0.75707 1.22195 1.20988 1.22231 1.21215 0.93389 0.94306 1.13171 0.87707 0.90039 0.88289 0.89040 0.89257 0.89438 0.82468 0.76234 0.92814 0.92245 0.90704 0.94842 0.92099 0.92842 0.79495 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 8.65 36.01 0.31 -0.54 16 2 C 0.16 2.01 7.44 -80.23 -0.60 1.41 16 3 N -0.28 -3.82 12.81 34.85 0.45 -3.37 16 4 O -0.08 -1.20 12.06 7.67 0.09 -1.11 16 5 C 0.30 3.95 8.64 -16.42 -0.14 3.81 16 6 N -0.47 -5.56 10.25 -9.24 -0.09 -5.66 16 7 C 0.20 1.78 6.78 -82.58 -0.56 1.22 16 8 C -0.11 -0.52 10.14 36.00 0.37 -0.16 16 9 C -0.18 -1.50 9.05 -39.00 -0.35 -1.86 16 10 C 0.01 0.10 5.84 -104.46 -0.61 -0.51 16 11 C 0.55 6.81 7.08 -12.26 -0.09 6.72 16 12 O -0.51 -7.61 12.83 5.34 0.07 -7.54 16 13 N -0.70 -8.10 4.93 -54.70 -0.27 -8.37 16 14 C 0.13 1.97 2.62 -67.93 -0.18 1.79 16 15 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 16 C -0.16 -2.31 9.00 37.16 0.33 -1.97 16 17 C 0.17 3.01 2.93 -67.93 -0.20 2.81 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 C -0.17 -2.54 9.01 37.16 0.33 -2.20 16 20 N -0.73 -16.61 5.03 -53.43 -0.27 -16.88 16 21 C -0.34 -8.81 9.93 -15.06 -0.15 -8.96 16 22 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 23 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 24 N -0.94 -27.89 13.70 55.49 0.76 -27.13 16 25 Si 1.08 24.82 29.92 -169.99 -5.09 19.73 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 29 C -0.21 -2.71 6.12 -104.83 -0.64 -3.35 16 30 H 0.10 1.10 7.88 -51.93 -0.41 0.69 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.10 6.25 -51.93 -0.32 0.77 16 33 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.09 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.16 0.86 7.72 -52.49 -0.41 0.46 16 37 H 0.40 3.68 5.85 -40.82 -0.24 3.44 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 40 H 0.07 1.22 6.29 -51.93 -0.33 0.89 16 41 H 0.03 0.37 6.29 -51.93 -0.33 0.04 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 44 H 0.37 8.68 4.60 -40.82 -0.19 8.49 16 45 H 0.25 7.40 6.77 -40.82 -0.28 7.12 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -32.66 368.62 -6.79 -39.45 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.73 Total: 8.35 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.27 Total: -3.03 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.57 Total: -61.41 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.16 Total: -8.65 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.66 -6.79 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733983754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.599 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds