Wall clock time and date at job start Tue Mar 31 2020 16:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29812 * 126.33243 * 2 1 4 4 O 1.41332 * 109.72525 * 179.97438 * 3 2 1 5 5 C 1.34829 * 109.42319 * 359.97438 * 4 3 2 6 6 N 1.32451 * 133.09856 * 179.97438 * 5 4 3 7 7 C 1.31562 * 122.02738 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.17462 * 179.97438 * 7 6 5 9 9 C 1.38598 * 121.65782 * 359.70035 * 7 6 5 10 10 C 1.39445 * 119.19856 * 0.57480 * 9 7 6 11 11 C 1.48002 * 121.10331 * 179.74096 * 10 9 7 12 12 O 1.21529 * 119.99996 * 144.49327 * 11 10 9 13 13 N 1.34776 * 119.99989 * 324.49056 * 11 10 9 14 14 C 1.46502 * 119.99830 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47076 * 324.99638 * 14 13 11 16 16 C 1.53004 * 109.47335 * 85.00154 * 14 13 11 17 17 C 1.52998 * 109.46755 * 204.99586 * 14 13 11 18 18 H 1.09006 * 109.47048 * 65.00472 * 17 14 13 19 19 C 1.53001 * 109.47511 * 305.00167 * 17 14 13 20 20 N 1.46498 * 109.47127 * 184.99885 * 17 14 13 21 21 C 1.36939 * 120.00401 * 205.00233 * 20 17 14 22 22 H 1.07996 * 119.99773 * 0.02562 * 21 20 17 23 23 C 1.38807 * 120.00277 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99912 * 0.27411 * 23 21 20 25 25 Si 1.86798 * 120.00048 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47585 * 59.99783 * 25 23 21 27 27 H 1.48499 * 109.47136 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46859 * 299.99574 * 25 23 21 29 29 C 1.40526 * 106.86131 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46873 * 264.26392 * 1 2 3 31 31 H 1.09003 * 109.47030 * 24.26446 * 1 2 3 32 32 H 1.08998 * 109.46565 * 144.26315 * 1 2 3 33 33 H 1.09007 * 109.46625 * 89.99605 * 8 7 6 34 34 H 1.08996 * 109.47531 * 209.99903 * 8 7 6 35 35 H 1.09000 * 109.46876 * 330.00799 * 8 7 6 36 36 H 1.07995 * 120.40249 * 180.30454 * 9 7 6 37 37 H 0.97000 * 119.99966 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46544 * 299.99930 * 16 14 13 39 39 H 1.09002 * 109.47141 * 59.99534 * 16 14 13 40 40 H 1.08993 * 109.46944 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47278 * 59.99907 * 19 17 14 42 42 H 1.09002 * 109.46700 * 180.02562 * 19 17 14 43 43 H 1.08996 * 109.46904 * 299.99754 * 19 17 14 44 44 H 0.97001 * 120.00135 * 25.00488 * 20 17 14 45 45 H 0.96992 * 120.00035 * 359.72339 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6305 0.6418 0.0006 5 6 3.6967 -0.7048 0.0015 6 7 4.7071 -1.5612 0.0019 7 6 4.5182 -2.8632 0.0034 8 6 5.7149 -3.7791 0.0032 9 6 3.2463 -3.4137 0.0108 10 6 2.1385 -2.5668 0.0046 11 6 0.7614 -3.1092 0.0064 12 8 -0.1186 -2.5312 0.6133 13 7 0.4834 -4.2442 -0.6651 14 6 -0.8798 -4.7808 -0.6638 15 1 -1.3448 -4.5891 0.3031 16 6 -1.6961 -4.1024 -1.7659 17 6 -0.8345 -6.2889 -0.9179 18 1 -0.3296 -6.7822 -0.0873 19 6 -0.0714 -6.5649 -2.2150 20 7 -2.2002 -6.8056 -1.0354 21 6 -2.4615 -8.1203 -0.7551 22 1 -1.6607 -8.7761 -0.4470 23 6 -3.7555 -8.6100 -0.8669 24 7 -4.7305 -7.8120 -1.2476 25 14 -4.1119 -10.4032 -0.4838 26 1 -3.7395 -10.6921 0.9243 27 1 -5.5591 -10.6729 -0.6789 28 1 -3.3203 -11.2703 -1.3931 29 6 2.3735 -1.1780 0.0022 30 1 -0.3633 -0.1027 1.0225 31 1 -0.3633 0.9369 -0.4223 32 1 -0.3632 -0.8342 -0.6002 33 1 6.0044 -3.9988 1.0309 34 1 5.4621 -4.7072 -0.5094 35 1 6.5439 -3.2936 -0.5118 36 1 3.1147 -4.4856 0.0168 37 1 1.1857 -4.7054 -1.1499 38 1 -1.7283 -3.0279 -1.5849 39 1 -1.2310 -4.2941 -2.7329 40 1 -2.7104 -4.5013 -1.7645 41 1 0.9448 -6.1805 -2.1276 42 1 -0.0395 -7.6393 -2.3961 43 1 -0.5763 -6.0716 -3.0455 44 1 -2.9196 -6.2165 -1.3118 45 1 -4.5455 -6.8808 -1.4462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733983754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:36 Heat of formation + Delta-G solvation = 33.184118 kcal Electronic energy + Delta-G solvation = -28559.377032 eV Core-core repulsion = 24579.392410 eV Total energy + Delta-G solvation = -3979.984622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.35246 -41.29234 -40.08067 -38.62295 -36.09284 -35.85541 -34.23857 -33.35350 -33.03341 -30.82059 -29.91593 -29.71928 -28.65990 -26.34636 -25.93311 -24.90906 -24.00457 -22.50848 -21.26932 -20.89153 -19.51828 -19.37197 -18.89849 -18.58929 -17.75867 -17.11696 -16.85196 -16.36213 -16.01588 -15.69667 -15.49614 -15.35926 -15.19325 -15.08757 -14.68562 -14.58193 -14.42915 -14.11441 -13.90028 -13.75317 -13.44435 -13.27272 -13.12056 -13.09815 -13.03116 -12.63403 -12.58637 -12.33807 -12.25402 -12.02651 -11.85044 -11.76159 -11.57208 -11.23835 -10.91825 -10.84041 -10.75143 -10.25074 -10.14976 -9.11181 -8.33842 -5.29033 -1.06859 -0.40355 0.60569 0.81428 1.44094 1.61619 1.70426 1.73443 1.86818 2.27306 2.46811 2.74917 2.79944 3.11277 3.22581 3.40712 3.44363 3.74717 3.77993 3.81740 3.98190 3.99787 4.11067 4.25016 4.29968 4.46241 4.49470 4.53179 4.54302 4.60546 4.78722 4.80203 4.86897 4.89011 4.91105 4.93369 5.05454 5.14617 5.18650 5.33117 5.35985 5.58296 5.65871 5.76808 6.29436 6.38494 6.54536 6.92560 7.13580 8.03602 8.13126 9.17935 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.002719 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.012209 B =10297.170104 C =11412.848384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.160 3.840 3 N -0.299 5.299 4 O -0.106 6.106 5 C 0.278 3.722 6 N -0.491 5.491 7 C 0.209 3.791 8 C -0.108 4.108 9 C -0.157 4.157 10 C 0.000 4.000 11 C 0.556 3.444 12 O -0.541 6.541 13 N -0.688 5.688 14 C 0.151 3.849 15 H 0.068 0.932 16 C -0.154 4.154 17 C 0.170 3.830 18 H 0.051 0.949 19 C -0.160 4.160 20 N -0.745 5.745 21 C -0.325 4.325 22 H 0.070 0.930 23 C -0.105 4.105 24 N -0.978 5.978 25 Si 1.124 2.876 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.277 1.277 29 C -0.231 4.231 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.196 0.804 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.363 0.637 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.635 8.553 0.248 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 N -0.049 5.049 4 O -0.107 6.107 5 C 0.096 3.904 6 N -0.213 5.213 7 C 0.066 3.934 8 C -0.165 4.165 9 C -0.178 4.178 10 C -0.013 4.013 11 C 0.341 3.659 12 O -0.419 6.419 13 N -0.342 5.342 14 C 0.045 3.955 15 H 0.086 0.914 16 C -0.212 4.212 17 C 0.061 3.939 18 H 0.069 0.931 19 C -0.220 4.220 20 N -0.390 5.390 21 C -0.456 4.456 22 H 0.088 0.912 23 C -0.296 4.296 24 N -0.626 5.626 25 Si 0.950 3.050 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.203 1.203 29 C -0.238 4.238 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.213 0.787 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.197 0.803 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.979 9.406 0.817 22.097 hybrid contribution 0.045 0.579 -0.303 0.655 sum 20.023 9.985 0.514 22.381 Atomic orbital electron populations 1.20667 0.82001 1.04975 1.05707 1.24948 0.99417 0.88645 0.89017 1.80086 0.83828 1.17802 1.23193 1.89189 1.24127 1.15870 1.81561 1.20526 0.89832 0.86324 0.93695 1.66463 1.32907 1.03582 1.18318 1.22187 0.96702 0.87510 0.86987 1.21126 0.92466 0.97247 1.05679 1.22638 0.90379 1.03104 1.01658 1.19929 0.94746 0.90857 0.95779 1.18137 0.87066 0.81134 0.79567 1.90815 1.47881 1.59209 1.43950 1.45878 1.12003 1.24726 1.51574 1.20992 0.81757 0.93199 0.99522 0.91372 1.22080 0.99783 1.00373 0.99000 1.20489 0.86033 0.90458 0.96908 0.93062 1.22380 0.99854 1.01395 0.98363 1.42657 1.05064 1.08600 1.82661 1.20348 0.95923 0.88091 1.41271 0.91169 1.27063 0.91879 1.09679 1.00975 1.70996 1.34052 1.06119 1.51475 0.82661 0.75285 0.70449 0.76644 1.20529 1.22465 1.20277 1.21311 0.93143 0.95026 1.14357 0.87876 0.88321 0.88809 0.87519 0.86143 0.89412 0.78652 0.74433 0.92051 0.90952 0.93063 0.89987 0.93988 0.93185 0.80294 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 8.65 71.24 0.62 -0.97 16 2 C 0.16 4.03 7.44 44.94 0.33 4.36 16 3 N -0.30 -8.41 12.81 -43.67 -0.56 -8.97 16 4 O -0.11 -3.13 12.06 29.84 0.36 -2.77 16 5 C 0.28 7.33 8.64 85.16 0.74 8.06 16 6 N -0.49 -10.85 10.25 -296.38 -3.04 -13.89 16 7 C 0.21 2.95 6.78 42.68 0.29 3.24 16 8 C -0.11 -0.56 10.14 71.24 0.72 0.16 16 9 C -0.16 -2.03 9.05 22.65 0.20 -1.83 16 10 C 0.00 -0.01 5.84 -19.76 -0.12 -0.12 16 11 C 0.56 12.65 7.08 86.83 0.61 13.27 16 12 O -0.54 -15.58 12.83 -3.81 -0.05 -15.63 16 13 N -0.69 -13.85 4.93 -445.27 -2.19 -16.04 16 14 C 0.15 4.23 2.62 44.99 0.12 4.35 16 15 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 16 C -0.15 -4.32 9.00 71.98 0.65 -3.67 16 17 C 0.17 5.58 2.93 44.99 0.13 5.71 16 18 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 19 C -0.16 -4.30 9.01 71.98 0.65 -3.65 16 20 N -0.75 -33.81 5.03 -322.94 -1.62 -35.44 16 21 C -0.32 -16.93 9.93 84.03 0.83 -16.09 16 22 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.10 -5.80 5.50 84.86 0.47 -5.33 16 24 N -0.98 -59.21 13.70 21.65 0.30 -58.91 16 25 Si 1.12 49.78 29.92 68.60 2.05 51.83 16 26 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 29 C -0.23 -5.71 6.12 -20.00 -0.12 -5.84 16 30 H 0.10 2.19 7.88 -2.39 -0.02 2.17 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.06 6.25 -2.39 -0.01 2.04 16 33 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.12 -0.07 8.07 -2.39 -0.02 -0.09 16 35 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.20 0.95 7.72 -2.91 -0.02 0.93 16 37 H 0.42 5.72 5.85 -92.71 -0.54 5.18 16 38 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.07 1.82 6.57 -2.39 -0.02 1.81 16 40 H 0.05 1.69 6.29 -2.39 -0.02 1.68 16 41 H 0.08 1.38 6.29 -2.39 -0.02 1.37 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.39 6.56 -2.39 -0.02 1.38 16 44 H 0.36 17.40 4.60 -92.71 -0.43 16.97 16 45 H 0.24 14.67 6.77 -92.71 -0.63 14.04 16 Total: -1.00 -73.91 368.62 1.60 -72.30 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.23 Total: 25.86 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.13 Total: 1.65 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -7.12 Total: -133.24 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.31 Total: -18.40 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -73.91 1.60 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733983754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.489 kcal (2) G-P(sol) polarization free energy of solvation -73.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds